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Clarified the logic in filtreg by creating a procedure filtreg_hemisph. It was terrible with a loop on hemispheres and tests on hemisphere inside the loop, plus maddening indirections on latitude bounds, plus repeated code. Went from 126 lines to much clearer 74 + 32 = 106 lines. In module inifilr_m, finally made the arrays matrice[uv][ns], matrinv[ns] dynamic (following LMDZ). Changed the lower bound of matriceun and matrinvn in the 3rd dimension: 2 instead of 1, the index 1 was not defined (nor used). In module inifilr_m, changed the bounds of matriceus and matrinvs in the 3rd dimension: jfiltsu:jjm instead of 1:jjm - jfiltsu + 1. Changed the bounds of matricevs in the 3rd dimension: jfiltsv:jjm instead of 1:jjm - jfiltsv + 1. It is a little simpler and clearer this way in procedure inifilr.
Sources inside, compilation outside.
Removed procedure jacobi, which was a copy of the file from Numerical Recipes in Fortran 77. Refer to the Numer_Rec_95 library instead. There was a strange line in procedure coordij: j cannot be equal to 0 after the loop on j.
Moved the call to read_serre out of conf_gcm so that it can be called only in the program ce0l, not in gcm. In gcm, variables of module serre are read from start file. Added reading of dzoomx, dzoomy, taux, tauy from start file, in dynetat0. Those variables were written by dynredem0 but not read. Removed possibility fxyhypb = false, because the geometric part of the program is such a mess. Could then remove variables transx, transy, alphax, alphay, pxo, pyo of module serre. Bug fix in tau2alpha: missing save attributes. The first call to tau2alpha needs to compute dxdyu and dxdyv regardless of value of argument type, because they will be needed for subsequent calls to tau2alpha with various values of argument type.
Changed all ".f90" suffixes to ".f".
Moved everything out of libf.
Write used namelists to file "" instead of standard output. Avoid aliasing in "inidissip" in calls to "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Add a degenerate dimension to arrays so they have rank 3, like the dummy arguments in "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Extract the initialization part from "bilan_dyn" and make a separate procedure, "init_dynzon", from it. Move variables from modules "iniprint" and "logic" to module "conf_gcm_m". Promote internal procedures of "fxy" to private procedures of module "fxy_m". Extracted documentation from "inigeom". Removed useless "save" attributes. Removed useless intermediate variables. Extracted processing of poles from loop on latitudes. Write coordinates to file "longitude_latitude.txt" instead of standard output. Do not use ozone tracer for radiative transfer.
Removed Numerical Recipes procedure "ran1". Replaced calls to "ran1" in "inidissip" by calls to intrinsic procedures. Split file "interface_surf.f90" into a file with a module containing only variables, "interface_surf", and single-procedure files. Gathered files into directory "Interface_surf". Added argument "cdivu" to "gradiv" and "gradiv2", "cdivh" to "divgrad2" and "divgrad", and "crot" to "nxgraro2" and "nxgrarot". "dissip" now uses variables "cdivu", "cdivh" and "crot" from module "inidissip_m", so it can pass them to "gradiv2", etc. Thanks to this modification, we avoid a circular dependency betwwen "inidissip.f90" and "gradiv2.f90", etc. The value -1. used by "gradiv2", for instance, during computation of eigenvalues is not the value "cdivu" computed by "inidissip". Extracted procedure "start_inter_3d" from module "startdyn", to its own module. In "inidissip", unrolled loop on "ii". I find it clearer now. Moved variables "matriceun", "matriceus", "matricevn", "matricevs", "matrinvn" and "matrinvs" from module "parafilt" to module "inifilr_m". Moved variables "jfiltnu", "jfiltnv", "jfiltsu", "jfiltsv" from module "coefils" to module "inifilr_m".
"alpha" useless, always 0, in "exner_hyb".
Split "stringop.f90" into single-procedure files. Gathered files in directory "IOIPSL/Stringop". Split "flincom.f90" into "flincom.f90" and "flinget.f90". Removed unused procedures from module "flincom". Removed unused argument "filename" of procedure "flinopen_nozoom". Removed unused files. Split "grid_change.f90" into "grid_change.f90" and "gr_phy_write_3d.f90". Removed unused procedures from modules "calendar", "ioipslmpp", "grid_atob", "gath_cpl" and "getincom". Removed unused procedures in files "ppm3d.f" and "thermcell.f". Split "mathelp.f90" into "mathelp.f90" and "mathop.f90". Removed unused variable "dpres" of module "comvert". Use argument "itau" instead of local variables "iadvtr" and "first" to control algorithm in procedure "fluxstokenc". Removed unused arguments of procedure "integrd". Removed useless computations at the end of procedure "leapfrog". Merged common block "matrfil" into module "parafilt".
Simplified "etat0_lim.sh" and "gcm.sh" because the full versions depended on personal arrangements for directories and machines. Translated included files into modules. Encapsulated procedures into modules. Moved variables from module "comgeom" to local variables of "inigeom". Deleted some unused variables in "comgeom". Moved variable "day_ini" from module "temps" to module "dynetat0_m". Removed useless test on variable "time" and useless "close" statement in procedure "leapfrog". Removed useless call to "inigeom" in procedure "limit".
Created module from included file parafilt. Converted caldyn0 to free format. Added a rule to create cross-references with NAG. Added optional attribute in iniadvtrac. Suppressed argument nq in dynredem0 and dynredem1, using nqmx instead. Replaced some NetCDF calls by netcdf95 calls in dynredem0. Added intent attribute in dynredem0 and dynredem1. Annotated use statements with only clause, in dynredem1. Suppressed variable nq and argument of iniadvtrac in etat0. Added test on nqmx in etat0.
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