[lmdze] Log of /trunk/Sources/phylmd/Mobidic

Revision 225 - Directory Listing
Modified Mon Oct 16 12:35:41 2017 UTC (6 years, 6 months ago) by guez

LMDZE is now in Fortran 2003 (use of allocatable arguments).

gradsdef was not used.

Change names: [uv]10m to [uv]10m_srf in clmain, y[uv]1 to
[uv]1lay. Remove useless complication: zx_alf[12]. Do not modify
[uv]1lay after initial definition from [uv].

Add [uv]10m_srf to output.

Change names in physiq: [uv]10m to [uv]10m_srf, z[uv]10m to [uv]10m,
corresponding to NetCDF output names.

Remove unused complication couchelimite and useless variable inirnpb
in phytrac.

Revision 173 - Directory Listing
Modified Tue Oct 6 15:57:02 2015 UTC (8 years, 6 months ago) by guez

correctbid did nothing. (Not used either in LMDZ since revision 1170.)

Avoid aliasing in arguments of nat2gcm: use a single set of arguments
with intent inout. Argument q of nat2gcm was not used.

pres2lev now accepts po in any monotonic order. So the input files for
nudging can now have the pressure coordinate in any order. Also, we
read the latitude coordinate from the input files for nudging and we
invert order if necessary so the input files for nudging can now have
the latitude coordinate in any order.

In pre2lev, no need for lmomx: use automatic arrays.

Removed variable ncep of module conf_guide_m. Instead, we find out
what the pressure coordinate is with find_coord.

Revision 168 - Directory Listing
Modified Wed Sep 9 10:41:47 2015 UTC (8 years, 7 months ago) by guez

In order to be able to choose finer resolutions, set large memory
model in compiler options and use dynamic libraries.

Variables rlatd, rlond, cuphy and cvphy of module comgeomphy were
never used. (In LMDZ, they are used only for Orchid.)

There is a bug in PGI Fortran 13.10 that does not accept the
combination of forall, pack and spread in regr_pr_av and
regr_pr_int. In order to circumvent this bug, created the function
gr_dyn_phy.

In program test_inifilr, use a single latitude coordinate for north
and south.

Revision 162 - Directory Listing
Modified Fri Jul 24 16:54:30 2015 UTC (8 years, 9 months ago) by guez

Variable pls of module pressure_var was only modified by calfis but I
could not move it to module calfis_m because it was used by a
procedure called by calfis (it would have been a cyclic
dependency). In the same way, variable p3d of module pressure_var was
only modified by leapfrog but I could not move it to module
leapfrog_m. So removed module pressure_var. p3d becomes a local
variable of leapfrog and an argument of calfis. Use paprs and play in
regr_pr_int and regr_pr_av (following LMDZ). The idea in regr_pr_int
and regr_pr_av is to spread and pack before the regridding instead of
packing afterward. The cost in memory should only be a two-dimensional
temporary array created by spread. The cost in clarity is only the
transiting of paprs and pplay through regr_pr_comb_coefoz, but this is
more than compensated by removing the side effect on module variables.

Revision 139 - Directory Listing
Modified Tue May 26 17:46:03 2015 UTC (8 years, 11 months ago) by guez

dynetat0 read rlonu, rlatu, rlonv, rlatv, cu_2d, cv_2d, aire_2d from
"start.nc" and then these variables were overwritten by
inigeom. Corrected this. Now, inigeom does not compute rlonu, rlatu,
rlonv and rlatv. Moreover, cu_2d, cv_2d, aire_2d are not written to
"restart.nc". Since xprimu, xprimv, xprimm025, xprimp025, rlatu1,
rlatu2, yprimu1, yprimu2 are computed at the same time as rlonu,
rlatu, rlonv, rlatv, and since it would not be convenient to separate
those computations, we decide to write xprimu, xprimv, xprimm025,
xprimp025, rlatu1, rlatu2, yprimu1, yprimu2 into "restart.nc", read
them from "start.nc" and not compute them in inigeom. So, in summary,
"start.nc" contains all the coordinates and their derivatives, and
inigeom only computes the 2D-variables.

Technical details:

Moved variables rlatu, rlonv, rlonu, rlatv, xprimu, xprimv from module
comgeom to module dynetat0_m. Upgraded local variables rlatu1,
yprimu1, rlatu2, yprimu2, xprimm025, xprimp025 of procedure inigeom to
variables of module dynetat0_m.

Removed unused local variable yprimu of procedure inigeom and
corresponding argument yyprimu of fyhyp.

Moved variables clat, clon, grossismx, grossismy, dzoomx, dzoomy,
taux, tauy from module serre to module dynetat0_m (since they are read
from "start.nc"). The default values are now defined in read_serre
instead of in the declarations. Changed name of module serre to
read_serre_m, no more module variable here.

The calls to fxhyp and fyhyp are moved from inigeom to etat0.

Side effects in programs other than gcm: etat0 and read_serre write
variables of module dynetat0; the programs test_fxyp and
test_inter_barxy need more source files.

Removed unused arguments len and nd of cv3_tracer. Removed unused
argument PPSOL of LWU.

Bug fix in test_inter_barxy: forgotten call to read_serre.

Revision 129 - Directory Listing
Modified Fri Feb 13 18:22:38 2015 UTC (9 years, 2 months ago) by guez
Original Path: trunk/phylmd/Mobidic

Removed arguments day0, anne0 of procedures initdynav and
inithist. Use directly day_ref, annee_ref instead.

Moved variables annee_ref, day_ref of module temps to module
dynetat0_m. Deleted variables dayref and anneeref of module conf_gcm_m
and removed them from namelist conf_gcm_nml. These variables were
troubling intermediary on the way to annee_ref and day_ref. Gave as
default values to annee_ref and day_ref the default values of dayref
and anneeref. Moved the test on raz_date from main unit gcm to
procedure dynetat0. Created namelist dynetat0_nml. Read annee_ref and
day_ref from standard input in dynetat0 and redefine them from
"start.nc" if not raz_date. Rationale: 1 - Choose the best programming
from the point of view of program gcm only, forgetting program ce0l. 2
- The normal case is to define annee_ref and day_ref from "start.nc"
so put them in module dynetat0_m rather than in conf_gcm_m. 3 - Try to
always read the same namelists in the same order regardless of choices
in previous namelists. Downsides: 1 -We now need the file "dynetat0.f"
for the program ce0l, because dynetat0_m is used by dynredem0. 2 - We
need to define annee_ref and day_ref from procedure etat0.

Removed useless variable day_end of module temps.

Revision 98 - Directory Listing
Modified Tue May 13 17:23:16 2014 UTC (9 years, 11 months ago) by guez
Original Path: trunk/phylmd/Mobidic

Split inter_barxy.f : one procedure per module, one module per
file. Grouped the files into a directory.

Split orbite.f.

Value of raz_date read from the namelist is taken into account
(resetting the step counter) even if annee_ref == anneeref and day_ref
== dayref. raz_date is no longer modified by gcm main unit. (Following
LMDZ.)

Removed argument klon of interfsur_lim. Renamed arguments lmt_alb,
lmt_rug to alb_new, z0_new (same name as corresponding actual
arguments in interfsurf_hq).

Removed argument klon of interfsurf_hq.

Removed arguments qs and d_qs of diagetpq. Were always
zero. Downgraded arguments d_qw, d_ql of diagetpq to local variables,
they were not used in physiq. Removed all computations for solid water
in diagetpq, was just zero.


Downgraded arguments fs_bound, fq_bound of diagphy to local variables,
they were not used in physiq. Encapsulated in a test on iprt all
computations in diagphy.

Removed parameter nbtr of module dimphy. Replaced it everywhere in the
program by nqmx - 2.

Removed parameter rnpb of procedure physiq. Kept the true case in
physiq and phytrac. Could not work with false case anyway.

Removed arguments klon, llm, airephy of qcheck. Removed argument ftsol
of initrrnpb, was not used.

Revision 97 - Directory Listing
Modified Fri Apr 25 14:58:31 2014 UTC (10 years ago) by guez
Original Path: trunk/phylmd/Mobidic

Module pressure_var is now only used in gcm. Created local variables
pls and p3d in etat0, added argument p3d to regr_pr_o3.

In leapfrog, moved computation of p3d and exner function immediately
after integrd, for clarity (does not change the execution).

Removed unused arguments: ntra, tra1 and tra of cv3_compress; ntra,
tra and traent of cv3_mixing; ntra, ftra, ftra1 of cv3_uncompress;
ntra, tra, trap of cv3_unsat; ntra, tra, trap, traent, ftra of
cv3_yield; tra, tvp, pbase, bbase, dtvpdt1, dtvpdq1, dplcldt,
dplcldr, ntra of concvl; ndp1, ntra, tra1 of cv_driver

Removed argument d_tra and computation of d_tra in concvl. Removed
argument ftra1 and computation of ftra1 in cv_driver. ftra1 was just
set to 0 in cv_driver, associated to d_tra in concvl, and set again to
zero in concvl.

Revision 90 - Directory Listing
Modified Wed Mar 12 21:16:36 2014 UTC (10 years, 1 month ago) by guez
Original Path: trunk/phylmd/Mobidic

Removed procedures ini_histday, ini_histhf, write_histday and
write_histhf.

Divided file regr_pr_coefoz.f into regr_pr_av.f and
regr_pr_int.f. (Following LMDZ.) Divided module regr_pr_coefoz into
modules regr_pr_av_m and regr_pr_int_m. Renamed regr_pr_av_coefoz to
regr_pr_av and regr_pr_int_coefoz to regr_pr_int. The idea is that
those procedures are more general than Mobidic.

Removed argument dudyn of calfis and physiq. dudyn is not used either
in LMDZ. Removed computation in calfis of unused variable zpsrf (not
used either in LMDZ). Removed useless computation of dqfi in calfis
(part 62): the results were overwritten. (Same in LMDZ.)

Revision 61 - Directory Listing
Modified Fri Apr 20 14:58:43 2012 UTC (12 years ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

No more included file in LMDZE, not even "netcdf.inc".

Created a variable containing the list of common source files in
GNUmakefile. So we now also see clearly files that are specific to
each program.

Split module "histcom". Assembled resulting files in directory
"Histcom".

Removed aliasing in calls to "laplacien".

Revision 52 - Directory Listing
Modified Fri Sep 23 12:28:01 2011 UTC (12 years, 7 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Split "conflx.f" into single-procedure files in directory "Conflx".

Split "cv_routines.f" into single-procedure files in directory
"CV_routines". Made module "cvparam" from included file
"cvparam.h". No included file other than "netcdf.inc" left in LMDZE.

Revision 47 - Directory Listing
Modified Fri Jul 1 15:00:48 2011 UTC (12 years, 9 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Split "thermcell.f" and "cv3_routines.f".
Removed copies of files that are now in "L_util".
Moved "mva9" and "diagetpq" to their own files.
Unified variable names across procedures.

Revision 39 - Directory Listing
Modified Tue Jan 25 15:11:05 2011 UTC (13 years, 3 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

"pi" comes from "nr_util". Removed subroutine "initialize" in module
"comconst".

Copied the content of "fxy_sin.h" into "fxysinus", instead of getting
it from an "include" line. Removed file "fxy_sin.h".

"ps" has rank 2 in "gcm" and "dynetat0".

Assumed-shape for argument "q" of "integrd".

Revision 23 - Directory Listing
Modified Mon Dec 14 15:25:16 2009 UTC (14 years, 4 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Split "orografi.f": one file for each procedure. Put the created files
in new directory "Orography".

Removed argument "vcov" of procedure "sortvarc". Removed arguments
"itau" and "time" of procedure "caldyn0". Removed arguments "itau",
"time" and "vcov" of procedure "sortvarc0".

Removed argument "time" of procedure "dynredem1". Removed NetCDF
variable "temps" in files "start.nc" and "restart.nc", because its
value is always 0.

Removed argument "nq" of procedures "iniadvtrac" and "leapfrog". The
number of "tracers read in "traceur.def" must now be equal to "nqmx",
or "nqmx" must equal 4 if there is no file "traceur.def". Replaced
variable "nq" by constant "nqmx" in "leapfrog".

NetCDF variable for ozone field in "coefoz.nc" must now be called
"tro3" instead of "r".

Fixed bug in "zenang".

Revision 20 - Directory Listing
Modified Wed Oct 15 16:19:57 2008 UTC (15 years, 6 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Deleted argument "presnivs" of "physiq", "ini_histhf", "ini_histhf3d",
"ini_histday", "ini_histins", "ini_histrac", "phytrac". Access it from
"comvert" instead.

Replaced calls to NetCDF Fortran 77 interface by calls to Fortran 90
interface or to NetCDF95.

Procedure "gr_phy_write_3d" now works with a variable of arbitrary
size in the second dimension.

Annotated use statements with "only" clause.

Replaced calls to NetCDF interface version 2 by calls to Fortran 90
interface in "guide.f90" and "read_reanalyse.f".

In "write_histrac", replaced calls to "gr_fi_ecrit" by calls to
"gr_phy_write_2d" and "gr_phy_write_3d".

Revision 18 - Directory Listing
Modified Thu Aug 7 12:29:13 2008 UTC (15 years, 8 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

In module "regr_pr", rewrote scanning of horizontal positions as a
single set of loops, using a mask.

Added some "intent" attributes.

In "dynredem0", replaced calls to Fortran 77 interface of NetCDF by
calls to NetCDF95. Removed calls to "nf_redef", regrouped all writing
operations. In "dynredem1", replaced some calls to Fortran 77
interface of NetCDF by calls to Fortran 90 interface.

Renamed variable "nqmax" to "nq_phys".

In "physiq", if "nq >= 5" then "wo" is computed from the
parameterization of "Cariolle".

Revision 17 - Directory Listing
Modified Tue Aug 5 13:31:32 2008 UTC (15 years, 8 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Created rule for "compare_sampl_*" files in
"Documentation/Manuel_LMDZE.texfol/Graphiques/GNUmakefile".

Extracted "qcheck", "radiornpb", "minmaxqfi" into separate files.

Read pressure coordinate of ozone coefficients once per run instead of
every day.

Added some "intent" attributes.

Added argument "nq" to "ini_histday". Replaced calls to "gr_fi_ecrit"
by calls to "gr_phy_write_2d". "Sigma_O3_Royer" is written to
"histday.nc" only if "nq >= 4". Moved "ini_histrac" to module
"ini_hist".

Compute "zmasse" in "physiq", pass it to "phytrac".

Removed computations of "pftsol*" and "ppsrf*" in "phytrac".

Do not use variable "rg" from module "YOMCST" in "TLIFT".

Revision 13 - Directory Listing
Modified Fri Jul 25 19:59:34 2008 UTC (15 years, 9 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

-- Minor change of behaviour:

"etat0" does not compute "rugsrel" nor "radpas". Deleted arguments
"radpas" and "rugsrel" of "phyredem". Deleted argument "rugsrel" of
"phyetat0". "startphy.nc" does not contain the variable "RUGSREL". In
"physiq", "rugoro" is set to 0 if not "ok_orodr". The whole program
"etat0_lim" does not use "clesphys2".

-- Minor modification of input/output:

Created subroutine "read_clesphys2". Variables of "clesphys2" are read
in "read_clesphys2" instead of "conf_gcm". "printflag" does not print
variables of "clesphys2".

-- Should not change any result at run time:

References to module "numer_rec" instead of individual modules of
"Numer_rec_Lionel".

Deleted argument "clesphy0" of "calfis", "physiq", "conf_gcm",
"leapfrog", "phyetat0". Deleted variable "clesphy0" in
"gcm". "phyetat0" does not modify variables of "clesphys2".

The program unit "gcm" does not modify "itau_phy".

Added some "intent" attributes.

"regr11_lint" does not call "polint".

Revision 12 - Directory Listing
Modified Mon Jul 21 16:05:07 2008 UTC (15 years, 9 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

-- Minor modification of input/output:

Created procedure "read_logic". Variables of module "logic" are read
by "read_logic" instead of "conf_gcm". Variable "offline" of module
"conf_gcm" is read from namelist instead of "*.def".

Deleted arguments "dtime", "co2_ppm_etat0", "solaire_etat0",
"tabcntr0" and local variables "radpas", "tab_cntrl" of
"phyetat0". "phyetat0" does not read "controle" in "startphy.nc" any
longer. "phyetat0" now reads global attribute "itau_phy" from
"startphy.nc". "phyredem" does not create variable "controle" in
"startphy.nc" any longer. "phyredem" now writes global attribute
"itau_phy" of "startphy.nc". Deleted argument "tabcntr0" of
"printflag". Removed diagnostic messages written by "printflag" for
comparison of the variable "controle" of "startphy.nc" and the
variables read from "*.def" or namelist input.

-- Removing unwanted functionality:

Removed variable "lunout" from module "iniprint", replaced everywhere
by standard output.

Removed case "ocean == 'couple'" in "clmain", "interfsurf_hq" and
"physiq". Removed procedure "interfoce_cpl".

-- Should not change anything at run time:

Automated creation of graphs in documentation. More documentation on
input files.

Converted Fortran files to free format: "phyredem.f90", "printflag.f90".

Split module "clesphy" into "clesphys" and "clesphys2".

Removed variables "conser", "leapf", "forward", "apphys", "apdiss" and
"statcl" from module "logic". Added arguments "conser" to "advect",
"leapf" to "integrd". Added local variables "forward", "leapf",
"apphys", "conser", "apdiss" in "leapfrog".

Added intent attributes.

Deleted arguments "dtime" of "phyredem", "pdtime" of "flxdtdq", "sh"
of "phytrac", "dt" of "yamada".

Deleted local variables "dtime", "co2_ppm_etat0", "solaire_etat0",
"length", "tabcntr0" in "physiq". Replaced all references to "dtime"
by references to "pdtphys".

Revision 11 - Directory Listing
Modified Thu Jun 5 12:43:08 2008 UTC (15 years, 10 months ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Added option "-lines" for "nag_fcalls95" in "nag_tools.mk".
Added documentation.
Leading spaces removed in "REPLY" in "etat0_lim.sh".
"gcm.sh" does not require "coefoz_LMDZ.nc" to be present.

Revision 10 - Directory Listing
Modified Fri Apr 18 14:45:53 2008 UTC (16 years ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

Added NetCDF directory "/home/guez/include" in "g95.mk" and
"nag_tools.mk".

Added some "intent" attributes in "PVtheta", "advtrac", "caladvtrac",
"calfis", "diagedyn", "dissip", "vlspltqs", "aeropt", "ajsec",
"calltherm", "clmain", "cltrac", "cltracrn", "concvl", "conema3",
"conflx", "fisrtilp", "newmicro", "nuage", "diagcld1", "diagcld2",
"drag_noro", "lift_noro", "SUGWD", "physiq", "phytrac", "radlwsw", "thermcell".

Removed the case "ierr == 0" in "abort_gcm"; moved call to "histclo"
and messages for end of run from "abort_gcm" to "gcm"; replaced call
to "abort_gcm" in "leapfrog" by exit from outer loop.

In "calfis": removed argument "pp" and variable "unskap"; changed
"pksurcp" from scalar to rank 2; use "pressure_var"; rewrote
computation of "zplev", "zplay", "ztfi", "pcvgt" using "dyn_phy";
added computation of "pls".

Removed unused variable in "dynredem0".

In "exner_hyb": changed "dellta" from scalar to rank 1; replaced call
to "ssum" by call to "sum"; removed variables "xpn" and "xps";
replaced some loops by array expressions.

In "leapfrog": use "pressure_var"; deleted variables "p", "longcles".

Converted common blocks "YOECUMF", "YOEGWD" to modules.

Removed argument "pplay" in "cvltr", "diagetpq", "nflxtr".

Created module "raddimlw" from include file "raddimlw.h".

Corrected call to "new_unit" in "test_disvert".

Revision 7 - Directory Listing
Added Mon Mar 31 12:24:17 2008 UTC (16 years ago) by guez
Original Path: trunk/libf/phylmd/Mobidic

This revision is not in working order. Pending some moving of files.

Important changes. In the program "etat0_lim": ozone coefficients from
Mobidic are regridded in time instead of pressure ; consequences in
"etat0". In the program "gcm", ozone coefficients from Mobidic are
read once per day only for the current day and regridded in pressure ;
consequences in "o3_chem_m", "regr_pr_coefoz", "phytrac" and
"regr_pr_comb_coefoz_m".

NetCDF95 is a library and does not export NetCDF.

New variables "nag_gl_options", "nag_fcalls_options" and
"nag_cross_options" in "nag_tools.mk".

"check_coefoz.jnl" rewritten entirely for new version of
"coefoz_LMDZ.nc".

Target "obj_etat0_lim" moved from "GNUmakefile" to "nag_rules.mk".

Added some "intent" attributes in "calfis", "clmain", "clqh",
"cltrac", "cltracrn", "cvltr", "ini_undefSTD", "moy_undefSTD",
"nflxtr", "phystokenc", "phytrac", "readsulfate", "readsulfate_preind"
and "undefSTD".

In "dynetat0", "dynredem0" and "gcm", "phis" has rank 2 instead of
1. "phis" has assumed shape in "dynredem0".

Added module containing "dynredem0". Changed some calls with NetCDF
Fortran 77 interface to calls with NetCDF95 interface.

Replaced calls to "ssum" by calls to "sum" in "inigeom".

In "make.sh", new option "-c" to change compiler.

In "aaam_bud", argument "rjour" deleted.

In "physiq": renamed some variables; deleted variable "xjour".

In "phytrac": renamed some variables; new argument "lmt_pas".

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