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Sources inside, compilation outside.
Split inter_barxy.f : one procedure per module, one module per file. Grouped the files into a directory. Split orbite.f. Value of raz_date read from the namelist is taken into account (resetting the step counter) even if annee_ref == anneeref and day_ref == dayref. raz_date is no longer modified by gcm main unit. (Following LMDZ.) Removed argument klon of interfsur_lim. Renamed arguments lmt_alb, lmt_rug to alb_new, z0_new (same name as corresponding actual arguments in interfsurf_hq). Removed argument klon of interfsurf_hq. Removed arguments qs and d_qs of diagetpq. Were always zero. Downgraded arguments d_qw, d_ql of diagetpq to local variables, they were not used in physiq. Removed all computations for solid water in diagetpq, was just zero. Downgraded arguments fs_bound, fq_bound of diagphy to local variables, they were not used in physiq. Encapsulated in a test on iprt all computations in diagphy. Removed parameter nbtr of module dimphy. Replaced it everywhere in the program by nqmx - 2. Removed parameter rnpb of procedure physiq. Kept the true case in physiq and phytrac. Could not work with false case anyway. Removed arguments klon, llm, airephy of qcheck. Removed argument ftsol of initrrnpb, was not used.
Changed all ".f90" suffixes to ".f".
Moved everything out of libf.
No reason to call inidissip in ce0l. In inidissip, set random seed to 1 beacuse PGI compiler does not accept all zeros. dq was computed needlessly in caladvtrac. Arguments masse and dq of calfis not used. Replaced real*8 by double precision. Pass arrays with inverted order of vertical levels to conflx instead of creating local variables for this inside conflx.
Changed handling of compiler in compilation system. Removed the prefix letters "y", "p", "t" or "z" in some names of variables. Replaced calls to NetCDF by calls to NetCDF95. Extracted "ioget_calendar" procedures from "calendar.f90" into a separate file. Extracted to a separate file, "mathop2.f90", procedures that were not part of the generic interface "mathop" in "mathop.f90". Removed computation of "dq" in "bilan_dyn", which was not used. In "iniadvtrac", removed schemes 20 Slopes and 30 Prather. Was not compatible with declarations of array sizes. In "clcdrag", "ustarhb", "vdif_kcay", "yamada4" and "coefkz", changed the size of some arrays from "klon" to "knon". Removed possible call to "conema3" in "physiq". Removed unused argument "cd" in "yamada".
Split "ini_hist.f90" into single-procedure files. In "calfis" and "physiq", removed dummy argument "nq" since "nq" must be equal to "nqmx". In "calfis", renamed dummy argument "pq" to "q", same name as actual argument in "leapfrog". Renamed local variable "zqfi" to "qx", same name as dummy argument in "physiq". Removed arguments "itop_con" and "ibas_con" of "phytrac", which were not used.
-- Minor modification of input/output: Added variable "Sigma_O3_Royer" to "histday.nc". "ecrit_day" is not modified in "physiq". Removed variables "pyu1", "pyv1", "ftsol1", "ftsol2", "ftsol3", "ftsol4", "psrf1", "psrf2", "psrf3", "psrf4" "mfu", "mfd", "en_u", "en_d", "de_d", "de_u", "coefh" from "histrac.nc". Variable "raz_date" of module "conf_gcm_m" has logical type instead of integer type. -- Should not change any result at run time: Modified calls to "IOIPSL_Lionel" procedures because the interfaces of these procedures have been simplified. Changed name of variable in module "start_init_orog_m": "masque" to "mask". Created a module containing procedure "phyredem". Removed arguments "punjours", "pdayref" and "ptimestep" of procedure "iniphysiq". Renamed procedure "gr_phy_write" to "gr_phy_write_2d". Created procedure "gr_phy_write_3d". Removed procedures "ini_undefstd", "moy_undefSTD", "calcul_STDlev", "calcul_divers".
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