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In interfsurf_hq, changed names of variables : tsurf becomes ts (name of actual argument), tsurf_temp can then become simply tsurf.
clcdrag is no longer used in LMDZ. Replaced by cdrag in LMDZ. In cdrag in LMDZ, zxli is a symbolic constant, false. So removed case zxli true in LMDZE. read_sst is called zero (if no ocean point on the whole planet) time or once per call of physiq. If mod(itap - 1, lmt_pas) == 0 then we have advanced in time of lmt_pas and deja_lu is necessarily false. qsat[sl] and dqsat[sl] were never called. Added output of qsurf in histins, following LMDZ. Last dummy argument dtime of phystokenc is always the same as first dummy argument pdtphys, removed dtime. Removed make rules for nag_xref95, since it does not exist any longer.
Removed module conema3_m. Moved variables epmax and iflag_clw of conema3_m to conf_phys_m, where they are defined. Removed unused variable ok_adj_ema of conema3_m. Added variables d_t_ec, dtsw0 and dtlw0 to histins.nc (following LMDZ). Removed case not lessivage in phytrac. (Not used in LMDZ without INCA either.)
New philosophy on compiler options. Removed source code for thermcep = f. (Not used in LMDZ either.)
Removed intermediary objects of cv_thermo_m, access suphec_m directly. Procedure cv_thermo disappeared, all objects are named constants. In cv_driver and below, limited extents of arrays to what is needed. lv, cpn and th in cv30_compress were set at level nl + 1 but lv1, cpn1 and th1 are not defined at this level. This did not lead to an error because values at nl + 1 were not used. Removed test on ok_sync in phystokenc because it is not read at run time. Printing min and max of output NetCDF variables is heavy and archaic. Used histwrite_phy in phytrac.
Extracted the call to read_comdissnew out of conf_gcm. Made ok_instan a variable of module clesphys, itau_phy a variable of module phyetat0_m, nid_ins a variable of module ini_histins_m, itap a variable of new module time_phylmdz, so that histwrite_phy can be called from any procedure without the need to cascade those variables into that procedure. Made itau_w a variable of module time_phylmdz so that it is computed only once per time step of physics. Extracted variables of module clesphys which were in namelist conf_phys_nml into their own namelist, clesphys_nml, and created procedure read_clesphys reading clesphys_nml, to avoid side effect. No need for double precision in procedure getso4fromfile. Assume there is a single variable for the whole year in the NetCDF file instead of one variable per month. Created generic procedure histwrite_phy and removed procedure write_histins, following LMDZ. histwrite_phy has only two arguments, can be called from anywhere, and should manage the logic of writing or not writing into various history files with various operations. So the test on ok_instan goes inside histwrite_phy. Test for raz_date in phyetat0 instead of physiq to avoid side effect. Created procedure increment_itap to avoid side effect. Removed unnecessary differences between procedures readsulfate and readsulfate_pi.
Created module cv_thermo_m around procedure cv_thermo. Moved variables from module cvthermo to module cv_thermo_m, where they are defined. In ini_histins and initphysto, using part of rlon and rlat from phyetat0_m is pretending that we do not know about the dynamical grid, while the way we extract zx_lon(:, 1) and zx_lat(1, :) depends on ordering inside rlon and rlat. So we might as well simplify and clarify by using directly rlonv and rlatu. Removed intermediary variables in write_histins and phystokenc.
There was a function gr_phy_write_3d in dyn3d and a function gr_phy_write_2d in module grid_change. Moved them into a new module gr_phy_write_m under a generic interface gr_phy_write. Replaced calls to gr_fi_ecrit by calls to gr_phy_write. Removed arguments len, nloc and nd of cv30_compress. Removed arguments wd and wd1 of cv30_uncompress, wd of cv30_yield, wd of concvl, wd1 of cv_driver. Was just filled with 0. Removed option ok_gust in physiq, never used. In cv30_unsat, cv30_yield and cv_driver, we only need to define b to level nl - 1.
Removed variables nlm and nlp of module cv30_param_m. We do not believe much in the benefit of these intermediary variables so we go for clarity. Removed variable noff of module cv30_param_m. Never used anywhere else. Just set the value of nl explicitly in cv30_param. Removed argument nd of cv30_param. Only called with nd = klev. Replaced calls to zilch by array assignments. There was a strange double call to zilch with the same arguments in cv30_mixing. Removed procedure cv_flag. Just set the value of variable cvflag_grav of module cvflag at declaration.
Moved variables date0, deltat, datasz_max, ncvar_ids, point, buff_pos, buffer, regular from module histcom_var to modules where they are defined. Removed procedure ioipslmpp, useless for a sequential program. Added argument datasz_max to histwrite_real (to avoid circular dependency with histwrite). Removed useless variables and computations everywhere. Changed real litteral constants from default kind to double precision in lwb, lwu, lwvn, sw1s, swtt, swtt1, swu. Removed unused arguments: paer of sw, sw1s, sw2s, swclr; pcldsw of sw1s, sw2s; pdsig, prayl of swr; co2_ppm of clmain, clqh; tsol of transp_lay; nsrf of screenp; kcrit and kknu of gwstress; pstd of orosetup. Added output of relative humidity.
Do not write any longer to startphy.nc nor read from restartphy.nc the NetCDF variable ALBLW: it was the same than ALBE. ALBE was for the visible and ALBLW for the near infrared. In physiq, use only variables falbe and albsol, removed falblw and albsollw. See revision 888 of LMDZ. Removed unused arguments pdp of SUBROUTINE lwbv, ptave of SUBROUTINE lwv, kuaer of SUBROUTINE lwvd, nq of SUBROUTINE initphysto.
Sources inside, compilation outside.
Changed all ".f90" suffixes to ".f".
Moved procedure inigeom into module comgeom. In disvert, renamed s_sampling to vert_sampling, following LMDZ. Removed choice strato1. In case read, read ap and bp instead of s (following LMDZ). Added argument phis to start_init_orog and start_init_dyn, and removed variable phis of module start_init_orog_m. In etat0 and start_init_orog, renamed relief to zmea_2d. In start_init_dyn, renamed psol to ps. In start_init_orog, renamed relief_hi to relief. No need to set phis(iim + 1, :) = phis(1, :), already done in grid_noro. Documentation for massbar out of SVN, in massbar.txt. Documentation was duplicated in massdair, but not relevant in massdair. In conflx, no need to initialize pen_[ud] and pde_[ud]. In flxasc, used intermediary variable fact (following LMDZ). In grid_noro, added local variable zmea0 for zmea not smoothed and computed zphi from zmea instead of zmea0 (following LMDZ). This changes the results of ce0l. Removed arguments pen_u and pde_d of phytrac and nflxtr, which were not used.
Moved everything out of libf.
NaN to signalling NaN in gfortran_debug.mk. Removed unused procedures in getincom and getincom2. In procedure conf_interface, replaced call to getincom by new namelist. Moved procedure conf_interface into module interface_surf. Added variables sig1 and w01 to startphy.nc and restartphy.nc, for procedure cv_driver. Renamed (ema_)?work1 and (ema_)?work2 to sig1 and w01 in concvl and physiq. Deleted unused arguments of clmain, clqh and intersurf_hq, among which (y)?sollwdown. Following LMDZ, in physiq, read sollw instead of sollwdown from startphy.nc, write sollw instead of sollwdown to restartphy.nc. In procedure sw, initialized zfs[ud][pn]a[di], for runs where ok_ade and ok_aie are false. (Following LMDZ.) Added dimension klev to startphy.nc and restartphy.nc, and deleted dimension horizon_vertical. Made t_ancien and q_ancien two-dimensional NetCDF variables. Bug fix: in phyetat0, define ratqs, clwcon and rnebcon for vertical levels >=2. Bug fix: set mfg, p[de]n_[ud] to 0. when iflag_con >= 3. (Following LMDZ.)
Changed handling of compiler in compilation system. Removed the prefix letters "y", "p", "t" or "z" in some names of variables. Replaced calls to NetCDF by calls to NetCDF95. Extracted "ioget_calendar" procedures from "calendar.f90" into a separate file. Extracted to a separate file, "mathop2.f90", procedures that were not part of the generic interface "mathop" in "mathop.f90". Removed computation of "dq" in "bilan_dyn", which was not used. In "iniadvtrac", removed schemes 20 Slopes and 30 Prather. Was not compatible with declarations of array sizes. In "clcdrag", "ustarhb", "vdif_kcay", "yamada4" and "coefkz", changed the size of some arrays from "klon" to "knon". Removed possible call to "conema3" in "physiq". Removed unused argument "cd" in "yamada".
No more included file in LMDZE, not even "netcdf.inc". Created a variable containing the list of common source files in GNUmakefile. So we now also see clearly files that are specific to each program. Split module "histcom". Assembled resulting files in directory "Histcom". Removed aliasing in calls to "laplacien".
Split "getincom.f90" into "getincom.f90" and "getincom2.f90". Split "nuage.f" into "nuage.f90", "diagcld1.f90" and "diagcld2.f90". Created module "chem" from included file "chem.h". Moved "YOEGWD.f90" to directory "Orography". In "physiq", for evaporation of water, "zlsdcp" was equal to "zlvdc". Removed useless variables.
Split "stringop.f90" into single-procedure files. Gathered files in directory "IOIPSL/Stringop". Split "flincom.f90" into "flincom.f90" and "flinget.f90". Removed unused procedures from module "flincom". Removed unused argument "filename" of procedure "flinopen_nozoom". Removed unused files. Split "grid_change.f90" into "grid_change.f90" and "gr_phy_write_3d.f90". Removed unused procedures from modules "calendar", "ioipslmpp", "grid_atob", "gath_cpl" and "getincom". Removed unused procedures in files "ppm3d.f" and "thermcell.f". Split "mathelp.f90" into "mathelp.f90" and "mathop.f90". Removed unused variable "dpres" of module "comvert". Use argument "itau" instead of local variables "iadvtr" and "first" to control algorithm in procedure "fluxstokenc". Removed unused arguments of procedure "integrd". Removed useless computations at the end of procedure "leapfrog". Merged common block "matrfil" into module "parafilt".
Split "vlsplt.f" in single-procedure files. Gathered the files in directory "dyn3d/Vlsplt". Defined "pbarum(:, 1, :)" and "pbarum(:, jjm + 1, :)" in procedure "groupe".
Imported Source files of the external library "IOIPSL_Lionel" into "libf/IOIPSL". Split "cray.f90" into "scopy.f90" and "ssum.f90". Rewrote "leapfrog" in order to have a clearer algorithmic structure.
-- Minor modification of input/output: Added variable "Sigma_O3_Royer" to "histday.nc". "ecrit_day" is not modified in "physiq". Removed variables "pyu1", "pyv1", "ftsol1", "ftsol2", "ftsol3", "ftsol4", "psrf1", "psrf2", "psrf3", "psrf4" "mfu", "mfd", "en_u", "en_d", "de_d", "de_u", "coefh" from "histrac.nc". Variable "raz_date" of module "conf_gcm_m" has logical type instead of integer type. -- Should not change any result at run time: Modified calls to "IOIPSL_Lionel" procedures because the interfaces of these procedures have been simplified. Changed name of variable in module "start_init_orog_m": "masque" to "mask". Created a module containing procedure "phyredem". Removed arguments "punjours", "pdayref" and "ptimestep" of procedure "iniphysiq". Renamed procedure "gr_phy_write" to "gr_phy_write_2d". Created procedure "gr_phy_write_3d". Removed procedures "ini_undefstd", "moy_undefSTD", "calcul_STDlev", "calcul_divers".
-- Minor modification of input/output: Created procedure "read_logic". Variables of module "logic" are read by "read_logic" instead of "conf_gcm". Variable "offline" of module "conf_gcm" is read from namelist instead of "*.def". Deleted arguments "dtime", "co2_ppm_etat0", "solaire_etat0", "tabcntr0" and local variables "radpas", "tab_cntrl" of "phyetat0". "phyetat0" does not read "controle" in "startphy.nc" any longer. "phyetat0" now reads global attribute "itau_phy" from "startphy.nc". "phyredem" does not create variable "controle" in "startphy.nc" any longer. "phyredem" now writes global attribute "itau_phy" of "startphy.nc". Deleted argument "tabcntr0" of "printflag". Removed diagnostic messages written by "printflag" for comparison of the variable "controle" of "startphy.nc" and the variables read from "*.def" or namelist input. -- Removing unwanted functionality: Removed variable "lunout" from module "iniprint", replaced everywhere by standard output. Removed case "ocean == 'couple'" in "clmain", "interfsurf_hq" and "physiq". Removed procedure "interfoce_cpl". -- Should not change anything at run time: Automated creation of graphs in documentation. More documentation on input files. Converted Fortran files to free format: "phyredem.f90", "printflag.f90". Split module "clesphy" into "clesphys" and "clesphys2". Removed variables "conser", "leapf", "forward", "apphys", "apdiss" and "statcl" from module "logic". Added arguments "conser" to "advect", "leapf" to "integrd". Added local variables "forward", "leapf", "apphys", "conser", "apdiss" in "leapfrog". Added intent attributes. Deleted arguments "dtime" of "phyredem", "pdtime" of "flxdtdq", "sh" of "phytrac", "dt" of "yamada". Deleted local variables "dtime", "co2_ppm_etat0", "solaire_etat0", "length", "tabcntr0" in "physiq". Replaced all references to "dtime" by references to "pdtphys".
New variables "*_dir" in "g95.mk". Corrected some bugs: "etat0_lim" works, but not "gcm".
This revision is not in working order. Pending some moving of files. Important changes. In the program "etat0_lim": ozone coefficients from Mobidic are regridded in time instead of pressure ; consequences in "etat0". In the program "gcm", ozone coefficients from Mobidic are read once per day only for the current day and regridded in pressure ; consequences in "o3_chem_m", "regr_pr_coefoz", "phytrac" and "regr_pr_comb_coefoz_m". NetCDF95 is a library and does not export NetCDF. New variables "nag_gl_options", "nag_fcalls_options" and "nag_cross_options" in "nag_tools.mk". "check_coefoz.jnl" rewritten entirely for new version of "coefoz_LMDZ.nc". Target "obj_etat0_lim" moved from "GNUmakefile" to "nag_rules.mk". Added some "intent" attributes in "calfis", "clmain", "clqh", "cltrac", "cltracrn", "cvltr", "ini_undefSTD", "moy_undefSTD", "nflxtr", "phystokenc", "phytrac", "readsulfate", "readsulfate_preind" and "undefSTD". In "dynetat0", "dynredem0" and "gcm", "phis" has rank 2 instead of 1. "phis" has assumed shape in "dynredem0". Added module containing "dynredem0". Changed some calls with NetCDF Fortran 77 interface to calls with NetCDF95 interface. Replaced calls to "ssum" by calls to "sum" in "inigeom". In "make.sh", new option "-c" to change compiler. In "aaam_bud", argument "rjour" deleted. In "physiq": renamed some variables; deleted variable "xjour". In "phytrac": renamed some variables; new argument "lmt_pas".
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