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Moved variables from module com_io_dyn to module inithist_m, where they are defined. Split grid_atob.f into grille_m.f and dist_sphe.f. Extracted ASCCI art to documentation. In grille_m, use automatic arrays instead of maximum size. In grille_m, instead of printing data for every problematic point, print a single diagnostic message. Removed variables top_height, overlap, lev_histhf, lev_histday, lev_histmth, type_run, ok_isccp, ok_regdyn, lonmin_ins, lonmax_ins, latmin_ins, latmax_ins of module clesphys, not used. Removed variable itap of module histwrite_phy_m, not used. There is a variable itap in module time_phylmdz. Added output of tro3. In physiq, no need to compute wo at every time-step, since we only use it in radlwsw.
Removed intermediary objects of cv_thermo_m, access suphec_m directly. Procedure cv_thermo disappeared, all objects are named constants. In cv_driver and below, limited extents of arrays to what is needed. lv, cpn and th in cv30_compress were set at level nl + 1 but lv1, cpn1 and th1 are not defined at this level. This did not lead to an error because values at nl + 1 were not used. Removed test on ok_sync in phystokenc because it is not read at run time. Printing min and max of output NetCDF variables is heavy and archaic. Used histwrite_phy in phytrac.
Removed variables nk1 and nk in cv_driver and below. These arrays were just equal to the constant minorig. (This is also the case in LMDZ.) In cv_thermo, removed some variables which were copies of variables of suphec_m. Changed some variables to named constants.
Removed argument ierr of abort_gcm. It was always 1 and not used. Just encapsulated pres2lev into a module. Removed test on run_off in procedure calcul_fluxs. Useless. The test is always done just before in interfsurf_hq. Removed named constants rea and repsm in module suphec: never used.
In inifilr_hemisph, colat0 is necessarily >= 1. / rlamda(iim) (see notes) so we simplify the definition of jfilt. No need to keep modfrst values at other latitudes than the current one, and we can have one loop on latitudes instead of two. Just encapsulated transp into a module.
Sources inside, compilation outside.
Removed useless argument mode of subroutine read_reanalyse.
Changed all ".f90" suffixes to ".f".
Moved everything out of libf.
In procedure, "addfi" access directly the module variable "dtphys" instead of going through an argument. In "conflx", do not create a local variable for temperature with reversed order of vertical levels. Instead, give an actual argument with reversed order in "physiq". Changed names of variables "rmd" and "rmv" from module "suphec_m" to "md" and "mv". In "hgardfou", print only the first temperature out of range found.
LMDZE now uses library Jumble. Removed all calls to "flinget". Replaced calls to "flinget", "flininfo", "flinopen_nozoom" by calls to NetCDF95 and Jumble. Split file "cv_driver.f" into "cv_driver.f90", "cv_flag.f90" and "cv_thermo.f90". Bug fix: "QANCIEN" was read twice in "phyeytat0". In "physiq", initialization of "d_t", "d_u", "d_v" was useless.
Split "thermcell.f" and "cv3_routines.f". Removed copies of files that are now in "L_util". Moved "mva9" and "diagetpq" to their own files. Unified variable names across procedures.
"alpha" useless, always 0, in "exner_hyb".
Extracted ASCII art from "inigeom" into a separate text file in the documentation. "test_disvert" now creates a separate file for layer thicknesses. Moved variables from module "yomcst" to module "suphec_m" because this is where those variables are defined. Kept in "yomcst" only parameters of Earth orbit. Gave the attribute "parameter" to some variables of module "suphec_m". Variables of module "yoethf" were defined in procedure "suphec". Moved these definitions to a new procedure "yoethf" in module "yoethf_m".
Inlined procedure "pression". Split "guide.f90" into "guide.f90" and "tau2alpha.f90". Split "read_reanalyse.f" into single-procedure files in directory "Read_reanalyse". Useless copy of variables in "iniphysiq". Directly define module variables in "gcm" and remove procedure "iniphysiq". Added "pressure-altitude" in "test_disvert".
Created rule for "compare_sampl_*" files in "Documentation/Manuel_LMDZE.texfol/Graphiques/GNUmakefile". Extracted "qcheck", "radiornpb", "minmaxqfi" into separate files. Read pressure coordinate of ozone coefficients once per run instead of every day. Added some "intent" attributes. Added argument "nq" to "ini_histday". Replaced calls to "gr_fi_ecrit" by calls to "gr_phy_write_2d". "Sigma_O3_Royer" is written to "histday.nc" only if "nq >= 4". Moved "ini_histrac" to module "ini_hist". Compute "zmasse" in "physiq", pass it to "phytrac". Removed computations of "pftsol*" and "ppsrf*" in "phytrac". Do not use variable "rg" from module "YOMCST" in "TLIFT".
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