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Moved the call to read_serre out of conf_gcm so that it can be called only in the program ce0l, not in gcm. In gcm, variables of module serre are read from start file. Added reading of dzoomx, dzoomy, taux, tauy from start file, in dynetat0. Those variables were written by dynredem0 but not read. Removed possibility fxyhypb = false, because the geometric part of the program is such a mess. Could then remove variables transx, transy, alphax, alphay, pxo, pyo of module serre. Bug fix in tau2alpha: missing save attributes. The first call to tau2alpha needs to compute dxdyu and dxdyv regardless of value of argument type, because they will be needed for subsequent calls to tau2alpha with various values of argument type.
Removed 8 first arguments of fxyhyper, use variables of module serre instead. Moved reading of variables of module serre from procedure conf_gcm to new procedure read_serre. In guide, added conditions to avoid useless calls to tau2alpha and writefield. Bugfix: offline corresponds to alpha = 1. Open only one NetCDF file to read number of vertical levels. In tau2alpha, added conditions to avoid useless computations of dxdyu and dxdyv. gamma is not needed for a regular grid.
Removed unused file "condsurf.f" (only useful for ocean slab). day_step must be a multiple of 4 * iperiod if ok_guide. Changed type of variable online of module conf_guide_m from integer to logical. Value -1 was not useful, equivalent to not ok_guide. Removed argument masse of procedure guide. masse is kept consistent with ps throughout the run. masse need only be computed again just after ps has been modified. In prodecure guide, replaced use of remanent variable first by test on itau. Replaced test on variable "test" by test on integer values. In leapfrog, for the call to guide, replaced test on real values by test on integer values. Bug fix in tau2alpha: computation of dxdyv (following LMDZ revision 1040). In procedure wrgrads, replaced badly chosen argument name "if" by i_f.
Split inter_barxy.f : one procedure per module, one module per file. Grouped the files into a directory. Split orbite.f. Value of raz_date read from the namelist is taken into account (resetting the step counter) even if annee_ref == anneeref and day_ref == dayref. raz_date is no longer modified by gcm main unit. (Following LMDZ.) Removed argument klon of interfsur_lim. Renamed arguments lmt_alb, lmt_rug to alb_new, z0_new (same name as corresponding actual arguments in interfsurf_hq). Removed argument klon of interfsurf_hq. Removed arguments qs and d_qs of diagetpq. Were always zero. Downgraded arguments d_qw, d_ql of diagetpq to local variables, they were not used in physiq. Removed all computations for solid water in diagetpq, was just zero. Downgraded arguments fs_bound, fq_bound of diagphy to local variables, they were not used in physiq. Encapsulated in a test on iprt all computations in diagphy. Removed parameter nbtr of module dimphy. Replaced it everywhere in the program by nqmx - 2. Removed parameter rnpb of procedure physiq. Kept the true case in physiq and phytrac. Could not work with false case anyway. Removed arguments klon, llm, airephy of qcheck. Removed argument ftsol of initrrnpb, was not used.
Module pressure_var is now only used in gcm. Created local variables pls and p3d in etat0, added argument p3d to regr_pr_o3. In leapfrog, moved computation of p3d and exner function immediately after integrd, for clarity (does not change the execution). Removed unused arguments: ntra, tra1 and tra of cv3_compress; ntra, tra and traent of cv3_mixing; ntra, ftra, ftra1 of cv3_uncompress; ntra, tra, trap of cv3_unsat; ntra, tra, trap, traent, ftra of cv3_yield; tra, tvp, pbase, bbase, dtvpdt1, dtvpdq1, dplcldt, dplcldr, ntra of concvl; ndp1, ntra, tra1 of cv_driver Removed argument d_tra and computation of d_tra in concvl. Removed argument ftra1 and computation of ftra1 in cv_driver. ftra1 was just set to 0 in cv_driver, associated to d_tra in concvl, and set again to zero in concvl.
Changed all ".f90" suffixes to ".f".
Moved everything out of libf.
Deleted files cvparam3.f90 and nuagecom.f90. Moved variables from module cvparam3 to module cv3_param_m. Moved variables rad_chau1 and rad_chau2 from module nuagecom to module conf_phys_m. Read clesphys2_nml from conf_phys instead of gcm. Removed argument iflag_con from several procedures. Access module variable instead.
Write used namelists to file "" instead of standard output. Avoid aliasing in "inidissip" in calls to "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Add a degenerate dimension to arrays so they have rank 3, like the dummy arguments in "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Extract the initialization part from "bilan_dyn" and make a separate procedure, "init_dynzon", from it. Move variables from modules "iniprint" and "logic" to module "conf_gcm_m". Promote internal procedures of "fxy" to private procedures of module "fxy_m". Extracted documentation from "inigeom". Removed useless "save" attributes. Removed useless intermediate variables. Extracted processing of poles from loop on latitudes. Write coordinates to file "longitude_latitude.txt" instead of standard output. Do not use ozone tracer for radiative transfer.
Imported "writehist.f" from LMDZ. Moved module variable "histaveid" from "com_io_dyn" to "initdynav_m". In "inithist", access directly module variables from "com_io_dyn" instead of going through the arguments. Copying from LMDZ, write "u" and scalar variables to separate files. Create a new variable for the new file in "com_io_dyn". Copying from LMDZ, change the vertical axes of the three files. Removed some useless initializations in "dissip". In "bilan_dyn", removed useless variable "time". Avoiding the approximate test on "dt_cum" being a multiple of "dt_app", just compute "ncum" from known usage of "bilan_dyn" and compute "dt_cum" from "ncum". Change "periodav" from real to integer in "conf_gcm_m". Since "day_step" is required to be a multiple of "iperiod", so is "ncum".
"alpha" useless, always 0, in "exner_hyb".
"pi" comes from "nr_util". Removed subroutine "initialize" in module "comconst". Copied the content of "fxy_sin.h" into "fxysinus", instead of getting it from an "include" line. Removed file "fxy_sin.h". "ps" has rank 2 in "gcm" and "dynetat0". Assumed-shape for argument "q" of "integrd".
Test namelist input in procedure "conf_gcm" rather than program unit "gcm". Compute "time" in procedure "sortvarc" rather than "leapfrog". Rewrote "leapfrog" with a single loop on "itau" instead of two nested loops on number of periodic matsuno-leapfrog cycles and leapfrog iterations.
"dyn3d" and "filtrez" do not contain any included file so make rules have been updated. "comdissip.f90" was useless, removed it. "dynredem0" wrote undefined value in "controle(31)", that was overwritten by "dynredem1". Now "dynredem0" just writes 0 to "controle(31)". Removed arguments of "inidissip". "inidissip" now accesses the variables by use association. In program "etat0_lim", "itaufin" is not defined so "dynredem1" wrote undefined value to "controle(31)". Added argument "itau" of "dynredem1" to correct that. "itaufin" does not need to be a module variable (of "temps"), made it a local variable of "leapfrog". Removed calls to "diagedyn" from "leapfrog".
Moved variable "dtdiss" from module "comconst", variable "idissip" from module "conf_gcm_m" and all variables from module "comdissipn" to module "inidissip_m". "inidissip" creates file "inidissip.csv". "idissip" is no longer read from a namelist. Removed useless computation of "dtdiss" in procedure "iniconst".
Simplified "etat0_lim.sh" and "gcm.sh" because the full versions depended on personal arrangements for directories and machines. Translated included files into modules. Encapsulated procedures into modules. Moved variables from module "comgeom" to local variables of "inigeom". Deleted some unused variables in "comgeom". Moved variable "day_ini" from module "temps" to module "dynetat0_m". Removed useless test on variable "time" and useless "close" statement in procedure "leapfrog". Removed useless call to "inigeom" in procedure "limit".
-- Minor modification of input/output: Added variable "Sigma_O3_Royer" to "histday.nc". "ecrit_day" is not modified in "physiq". Removed variables "pyu1", "pyv1", "ftsol1", "ftsol2", "ftsol3", "ftsol4", "psrf1", "psrf2", "psrf3", "psrf4" "mfu", "mfd", "en_u", "en_d", "de_d", "de_u", "coefh" from "histrac.nc". Variable "raz_date" of module "conf_gcm_m" has logical type instead of integer type. -- Should not change any result at run time: Modified calls to "IOIPSL_Lionel" procedures because the interfaces of these procedures have been simplified. Changed name of variable in module "start_init_orog_m": "masque" to "mask". Created a module containing procedure "phyredem". Removed arguments "punjours", "pdayref" and "ptimestep" of procedure "iniphysiq". Renamed procedure "gr_phy_write" to "gr_phy_write_2d". Created procedure "gr_phy_write_3d". Removed procedures "ini_undefstd", "moy_undefSTD", "calcul_STDlev", "calcul_divers".
-- Minor change of behaviour: "etat0" does not compute "rugsrel" nor "radpas". Deleted arguments "radpas" and "rugsrel" of "phyredem". Deleted argument "rugsrel" of "phyetat0". "startphy.nc" does not contain the variable "RUGSREL". In "physiq", "rugoro" is set to 0 if not "ok_orodr". The whole program "etat0_lim" does not use "clesphys2". -- Minor modification of input/output: Created subroutine "read_clesphys2". Variables of "clesphys2" are read in "read_clesphys2" instead of "conf_gcm". "printflag" does not print variables of "clesphys2". -- Should not change any result at run time: References to module "numer_rec" instead of individual modules of "Numer_rec_Lionel". Deleted argument "clesphy0" of "calfis", "physiq", "conf_gcm", "leapfrog", "phyetat0". Deleted variable "clesphy0" in "gcm". "phyetat0" does not modify variables of "clesphys2". The program unit "gcm" does not modify "itau_phy". Added some "intent" attributes. "regr11_lint" does not call "polint".
-- Minor modification of input/output: Created procedure "read_logic". Variables of module "logic" are read by "read_logic" instead of "conf_gcm". Variable "offline" of module "conf_gcm" is read from namelist instead of "*.def". Deleted arguments "dtime", "co2_ppm_etat0", "solaire_etat0", "tabcntr0" and local variables "radpas", "tab_cntrl" of "phyetat0". "phyetat0" does not read "controle" in "startphy.nc" any longer. "phyetat0" now reads global attribute "itau_phy" from "startphy.nc". "phyredem" does not create variable "controle" in "startphy.nc" any longer. "phyredem" now writes global attribute "itau_phy" of "startphy.nc". Deleted argument "tabcntr0" of "printflag". Removed diagnostic messages written by "printflag" for comparison of the variable "controle" of "startphy.nc" and the variables read from "*.def" or namelist input. -- Removing unwanted functionality: Removed variable "lunout" from module "iniprint", replaced everywhere by standard output. Removed case "ocean == 'couple'" in "clmain", "interfsurf_hq" and "physiq". Removed procedure "interfoce_cpl". -- Should not change anything at run time: Automated creation of graphs in documentation. More documentation on input files. Converted Fortran files to free format: "phyredem.f90", "printflag.f90". Split module "clesphy" into "clesphys" and "clesphys2". Removed variables "conser", "leapf", "forward", "apphys", "apdiss" and "statcl" from module "logic". Added arguments "conser" to "advect", "leapf" to "integrd". Added local variables "forward", "leapf", "apphys", "conser", "apdiss" in "leapfrog". Added intent attributes. Deleted arguments "dtime" of "phyredem", "pdtime" of "flxdtdq", "sh" of "phytrac", "dt" of "yamada". Deleted local variables "dtime", "co2_ppm_etat0", "solaire_etat0", "length", "tabcntr0" in "physiq". Replaced all references to "dtime" by references to "pdtphys".
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