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In file grilles_gcm.nc, renamed variable phis to orog, deleted variable presnivs. Removed variable bug_ozone from module clesphys. In procedure ozonecm, moved computation of sint and cost out of the loops on horizontal position and vertical level. Inverted the order of the two loops. We can then move all computations from slat to aprim out of the loop on vertical levels. Created variable slat2, following LMDZ. Moved the limitation of column-density of ozone in cell at 1e-12 from radlwsw to ozonecm, following LMDZ. Removed unused arguments u, albsol, rh, cldfra, rneb, diafra, cldliq, pmflxr, pmflxs, prfl, psfl of phytrac. In procedure yamada4, for all the arrays, replaced the dimension klon by ngrid. At the end of the procedure, for the computation of kmn,kn, kq and q2, changed the upper limit of the loop index from klon to ngrid. In radlwsw, for the calculation of pozon, removed the factor paprs(iof+i, 1)/101325, as in LMDZ. In procedure sw, removed the factor 101325.0/PPSOL(JL), as in LMDZ.
Removed 8 first arguments of fxyhyper, use variables of module serre instead. Moved reading of variables of module serre from procedure conf_gcm to new procedure read_serre. In guide, added conditions to avoid useless calls to tau2alpha and writefield. Bugfix: offline corresponds to alpha = 1. Open only one NetCDF file to read number of vertical levels. In tau2alpha, added conditions to avoid useless computations of dxdyu and dxdyv. gamma is not needed for a regular grid.
Module pressure_var is now only used in gcm. Created local variables pls and p3d in etat0, added argument p3d to regr_pr_o3. In leapfrog, moved computation of p3d and exner function immediately after integrd, for clarity (does not change the execution). Removed unused arguments: ntra, tra1 and tra of cv3_compress; ntra, tra and traent of cv3_mixing; ntra, ftra, ftra1 of cv3_uncompress; ntra, tra, trap of cv3_unsat; ntra, tra, trap, traent, ftra of cv3_yield; tra, tvp, pbase, bbase, dtvpdt1, dtvpdq1, dplcldt, dplcldr, ntra of concvl; ndp1, ntra, tra1 of cv_driver Removed argument d_tra and computation of d_tra in concvl. Removed argument ftra1 and computation of ftra1 in cv_driver. ftra1 was just set to 0 in cv_driver, associated to d_tra in concvl, and set again to zero in concvl.
Changed all ".f90" suffixes to ".f".
Moved procedure inigeom into module comgeom. In disvert, renamed s_sampling to vert_sampling, following LMDZ. Removed choice strato1. In case read, read ap and bp instead of s (following LMDZ). Added argument phis to start_init_orog and start_init_dyn, and removed variable phis of module start_init_orog_m. In etat0 and start_init_orog, renamed relief to zmea_2d. In start_init_dyn, renamed psol to ps. In start_init_orog, renamed relief_hi to relief. No need to set phis(iim + 1, :) = phis(1, :), already done in grid_noro. Documentation for massbar out of SVN, in massbar.txt. Documentation was duplicated in massdair, but not relevant in massdair. In conflx, no need to initialize pen_[ud] and pde_[ud]. In flxasc, used intermediary variable fact (following LMDZ). In grid_noro, added local variable zmea0 for zmea not smoothed and computed zphi from zmea instead of zmea0 (following LMDZ). This changes the results of ce0l. Removed arguments pen_u and pde_d of phytrac and nflxtr, which were not used.
Moved everything out of libf.
In procedure, "addfi" access directly the module variable "dtphys" instead of going through an argument. In "conflx", do not create a local variable for temperature with reversed order of vertical levels. Instead, give an actual argument with reversed order in "physiq". Changed names of variables "rmd" and "rmv" from module "suphec_m" to "md" and "mv". In "hgardfou", print only the first temperature out of range found.
Extracted ASCII art from "inigeom" into a separate text file in the documentation. "test_disvert" now creates a separate file for layer thicknesses. Moved variables from module "yomcst" to module "suphec_m" because this is where those variables are defined. Kept in "yomcst" only parameters of Earth orbit. Gave the attribute "parameter" to some variables of module "suphec_m". Variables of module "yoethf" were defined in procedure "suphec". Moved these definitions to a new procedure "yoethf" in module "yoethf_m".
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