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No more included file in LMDZE, not even "netcdf.inc". Created a variable containing the list of common source files in GNUmakefile. So we now also see clearly files that are specific to each program. Split module "histcom". Assembled resulting files in directory "Histcom". Removed aliasing in calls to "laplacien".
Imported "writehist.f" from LMDZ. Moved module variable "histaveid" from "com_io_dyn" to "initdynav_m". In "inithist", access directly module variables from "com_io_dyn" instead of going through the arguments. Copying from LMDZ, write "u" and scalar variables to separate files. Create a new variable for the new file in "com_io_dyn". Copying from LMDZ, change the vertical axes of the three files. Removed some useless initializations in "dissip". In "bilan_dyn", removed useless variable "time". Avoiding the approximate test on "dt_cum" being a multiple of "dt_app", just compute "ncum" from known usage of "bilan_dyn" and compute "dt_cum" from "ncum". Change "periodav" from real to integer in "conf_gcm_m". Since "day_step" is required to be a multiple of "iperiod", so is "ncum".
-- In procedure "bilan_dyn", replaced average of "zvq" by integral of "zvq", following a comment of Francis Codron : Le calcul actuel donne des unités peu pratiques : transports de chaleur en K m / s par exemple. C'est bien pour les sorties à 2 dimensions, latitude et pression, car alors le transport ne dépend pas de l'espacement des niveaux, mieux pour comparer ou tracer en latitude et pression. Par contre, quand on somme sur la verticale, on préfèrerait avoir des transports d'énergie en watts, ou au moins an K kg / s (à multiplier par "Cp" ou "L"). On doit pouvoir recalculer le transport intégré à partir des fichiers de sortie, mais c'est embêtant (calcul de "cv"). -- Gathered files in directory Dissipation.
Removed Numerical Recipes procedure "ran1". Replaced calls to "ran1" in "inidissip" by calls to intrinsic procedures. Split file "interface_surf.f90" into a file with a module containing only variables, "interface_surf", and single-procedure files. Gathered files into directory "Interface_surf". Added argument "cdivu" to "gradiv" and "gradiv2", "cdivh" to "divgrad2" and "divgrad", and "crot" to "nxgraro2" and "nxgrarot". "dissip" now uses variables "cdivu", "cdivh" and "crot" from module "inidissip_m", so it can pass them to "gradiv2", etc. Thanks to this modification, we avoid a circular dependency betwwen "inidissip.f90" and "gradiv2.f90", etc. The value -1. used by "gradiv2", for instance, during computation of eigenvalues is not the value "cdivu" computed by "inidissip". Extracted procedure "start_inter_3d" from module "startdyn", to its own module. In "inidissip", unrolled loop on "ii". I find it clearer now. Moved variables "matriceun", "matriceus", "matricevn", "matricevs", "matrinvn" and "matrinvs" from module "parafilt" to module "inifilr_m". Moved variables "jfiltnu", "jfiltnv", "jfiltsu", "jfiltsv" from module "coefils" to module "inifilr_m".
Moved variable "dtdiss" from module "comconst", variable "idissip" from module "conf_gcm_m" and all variables from module "comdissipn" to module "inidissip_m". "inidissip" creates file "inidissip.csv". "idissip" is no longer read from a namelist. Removed useless computation of "dtdiss" in procedure "iniconst".
Simplified "etat0_lim.sh" and "gcm.sh" because the full versions depended on personal arrangements for directories and machines. Translated included files into modules. Encapsulated procedures into modules. Moved variables from module "comgeom" to local variables of "inigeom". Deleted some unused variables in "comgeom". Moved variable "day_ini" from module "temps" to module "dynetat0_m". Removed useless test on variable "time" and useless "close" statement in procedure "leapfrog". Removed useless call to "inigeom" in procedure "limit".
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