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No reason to call inidissip in ce0l. In inidissip, set random seed to 1 beacuse PGI compiler does not accept all zeros. dq was computed needlessly in caladvtrac. Arguments masse and dq of calfis not used. Replaced real*8 by double precision. Pass arrays with inverted order of vertical levels to conflx instead of creating local variables for this inside conflx.
In procedure, "addfi" access directly the module variable "dtphys" instead of going through an argument. In "conflx", do not create a local variable for temperature with reversed order of vertical levels. Instead, give an actual argument with reversed order in "physiq". Changed names of variables "rmd" and "rmv" from module "suphec_m" to "md" and "mv". In "hgardfou", print only the first temperature out of range found.
Deleted files cvparam3.f90 and nuagecom.f90. Moved variables from module cvparam3 to module cv3_param_m. Moved variables rad_chau1 and rad_chau2 from module nuagecom to module conf_phys_m. Read clesphys2_nml from conf_phys instead of gcm. Removed argument iflag_con from several procedures. Access module variable instead.
Split "flincom.f90" into "flinclo.f90", "flinfindcood.f90",
"flininfo.f90" and "flinopen_nozoom.f90", in directory
"IOIPSL/Flincom".
Renamed "etat0_lim" to "ce0l", as in LMDZ.
Split "readsulfate.f" into "readsulfate.f90", "readsulfate_preind.f90"
and "getso4fromfile.f90".
In etat0, renamed variable q3d to q, as in "dynredem1". Replaced calls
to Flicom procedures by calls to NetCDF95.
In leapfrog, added call to writehist.
Extracted ASCII art from "grid_noro" into a file
"grid_noro.txt". Transformed explicit-shape local arrays into
automatic arrays, so that test on values of iim and jjm is no longer
needed. Test on weight:
IF (weight(ii, jj) /= 0.) THEN
is useless. There is already a test before:
if (any(weight == 0.)) stop "zero weight in grid_noro"
In "aeropt", replaced duplicated lines with different values of inu by
a loop on inu.
Removed arguments of "conf_phys". Corresponding variables are now
defined in "physiq", in a namelist. In "conf_phys", read a namelist
instead of using getin.
Cleaning.
Changed name of module "comvert" to "disvert_m". Changed constant 1. to 0.3 in vertical sampling "strato".
Removed unused procedure "divgrad". In procedure "dissip", save memory by using intermediary arrays "gdx" and "gdy" several times instead of additional array "grx" and "gry". In procedure "inidissip", write "dtdiss * teta*" instead of "teta*". In "comvert", change name of s_sampling from "LMD5" to "tropo" and from "strato2" to "strato".
Removed variable lstardis in module comdissnew and procedures gradiv and nxgrarot. lstardir had to be true. gradiv and nxgrarot were called if lstardis was false. Removed argument iter of procedure filtreg. iter had to be 1. gradiv and nxgrarot called filtreg with iter == 2. Moved procedure flxsetup into module yoecumf. Module yoecumf is only used in program units of directory Conflx, moved it there.
Changed handling of compiler in compilation system. Removed the prefix letters "y", "p", "t" or "z" in some names of variables. Replaced calls to NetCDF by calls to NetCDF95. Extracted "ioget_calendar" procedures from "calendar.f90" into a separate file. Extracted to a separate file, "mathop2.f90", procedures that were not part of the generic interface "mathop" in "mathop.f90". Removed computation of "dq" in "bilan_dyn", which was not used. In "iniadvtrac", removed schemes 20 Slopes and 30 Prather. Was not compatible with declarations of array sizes. In "clcdrag", "ustarhb", "vdif_kcay", "yamada4" and "coefkz", changed the size of some arrays from "klon" to "knon". Removed possible call to "conema3" in "physiq". Removed unused argument "cd" in "yamada".
No more included file in LMDZE, not even "netcdf.inc". Created a variable containing the list of common source files in GNUmakefile. So we now also see clearly files that are specific to each program. Split module "histcom". Assembled resulting files in directory "Histcom". Removed aliasing in calls to "laplacien".
Write used namelists to file "" instead of standard output. Avoid aliasing in "inidissip" in calls to "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Add a degenerate dimension to arrays so they have rank 3, like the dummy arguments in "divgrad2", "divgrad", "gradiv2", "gradiv", "nxgraro2" and "nxgrarot". Extract the initialization part from "bilan_dyn" and make a separate procedure, "init_dynzon", from it. Move variables from modules "iniprint" and "logic" to module "conf_gcm_m". Promote internal procedures of "fxy" to private procedures of module "fxy_m". Extracted documentation from "inigeom". Removed useless "save" attributes. Removed useless intermediate variables. Extracted processing of poles from loop on latitudes. Write coordinates to file "longitude_latitude.txt" instead of standard output. Do not use ozone tracer for radiative transfer.
Imported "writehist.f" from LMDZ. Moved module variable "histaveid" from "com_io_dyn" to "initdynav_m". In "inithist", access directly module variables from "com_io_dyn" instead of going through the arguments. Copying from LMDZ, write "u" and scalar variables to separate files. Create a new variable for the new file in "com_io_dyn". Copying from LMDZ, change the vertical axes of the three files. Removed some useless initializations in "dissip". In "bilan_dyn", removed useless variable "time". Avoiding the approximate test on "dt_cum" being a multiple of "dt_app", just compute "ncum" from known usage of "bilan_dyn" and compute "dt_cum" from "ncum". Change "periodav" from real to integer in "conf_gcm_m". Since "day_step" is required to be a multiple of "iperiod", so is "ncum".
-- In procedure "bilan_dyn", replaced average of "zvq" by integral of "zvq", following a comment of Francis Codron : Le calcul actuel donne des unités peu pratiques : transports de chaleur en K m / s par exemple. C'est bien pour les sorties à 2 dimensions, latitude et pression, car alors le transport ne dépend pas de l'espacement des niveaux, mieux pour comparer ou tracer en latitude et pression. Par contre, quand on somme sur la verticale, on préfèrerait avoir des transports d'énergie en watts, ou au moins an K kg / s (à multiplier par "Cp" ou "L"). On doit pouvoir recalculer le transport intégré à partir des fichiers de sortie, mais c'est embêtant (calcul de "cv"). -- Gathered files in directory Dissipation.
Split "thermcell.f" and "cv3_routines.f". Removed copies of files that are now in "L_util". Moved "mva9" and "diagetpq" to their own files. Unified variable names across procedures.
Removed procedure "psextbar". "psextbar" was called but the result of the call was not used.
Split file "histwrite.f90" into "histwrite.f90", "histwrite_real.f90" and "histvar_seq.f90". Extracted documentation from "psextbar.f" into "psextbar.txt" (out of SVN).
Removed argument "pdteta" of "calfis", because it was not used. Created module "conf_guide_m", containing procedure "conf_guide". Moved module variables from "guide_m" to "conf_guide_m". In module "getparam", removed "ini_getparam" and "fin_getparam" from generic interface "getpar". Created module variables in "tau2alpha_m" to replace common "comdxdy".
"start_init_phys" is now called directly by "etat0" instead of through "start_init_dyn". "qsol_2d" is no longer a variable of module "start_init_phys_m", it is an argument of "start_init_phys". "start_init_dyn" now receives "tsol_2d" from "etat0". Split file "vlspltqs.f" into "vlspltqs.f90", "vlxqs.f90" and ""vlyqs.f90". In "start_init_orog", replaced calls to "flin*" by calls to NetCDF95.
Moved "Test_ozonecm" out of SVN.
"alpha" useless, always 0, in "exner_hyb".
"pi" comes from "nr_util". Removed subroutine "initialize" in module "comconst". Copied the content of "fxy_sin.h" into "fxysinus", instead of getting it from an "include" line. Removed file "fxy_sin.h". "ps" has rank 2 in "gcm" and "dynetat0". Assumed-shape for argument "q" of "integrd".
Inlined procedure "pression". Split "guide.f90" into "guide.f90" and "tau2alpha.f90". Split "read_reanalyse.f" into single-procedure files in directory "Read_reanalyse". Useless copy of variables in "iniphysiq". Directly define module variables in "gcm" and remove procedure "iniphysiq". Added "pressure-altitude" in "test_disvert".
Now using the library "NR_util".
Split "ini_hist.f90" into single-procedure files. In "calfis" and "physiq", removed dummy argument "nq" since "nq" must be equal to "nqmx". In "calfis", renamed dummy argument "pq" to "q", same name as actual argument in "leapfrog". Renamed local variable "zqfi" to "qx", same name as dummy argument in "physiq". Removed arguments "itop_con" and "ibas_con" of "phytrac", which were not used.
Test namelist input in procedure "conf_gcm" rather than program unit "gcm". Compute "time" in procedure "sortvarc" rather than "leapfrog". Rewrote "leapfrog" with a single loop on "itau" instead of two nested loops on number of periodic matsuno-leapfrog cycles and leapfrog iterations.
Split "stringop.f90" into single-procedure files. Gathered files in directory "IOIPSL/Stringop". Split "flincom.f90" into "flincom.f90" and "flinget.f90". Removed unused procedures from module "flincom". Removed unused argument "filename" of procedure "flinopen_nozoom". Removed unused files. Split "grid_change.f90" into "grid_change.f90" and "gr_phy_write_3d.f90". Removed unused procedures from modules "calendar", "ioipslmpp", "grid_atob", "gath_cpl" and "getincom". Removed unused procedures in files "ppm3d.f" and "thermcell.f". Split "mathelp.f90" into "mathelp.f90" and "mathop.f90". Removed unused variable "dpres" of module "comvert". Use argument "itau" instead of local variables "iadvtr" and "first" to control algorithm in procedure "fluxstokenc". Removed unused arguments of procedure "integrd". Removed useless computations at the end of procedure "leapfrog". Merged common block "matrfil" into module "parafilt".
Split "vlsplt.f" in single-procedure files. Gathered the files in directory "dyn3d/Vlsplt". Defined "pbarum(:, 1, :)" and "pbarum(:, jjm + 1, :)" in procedure "groupe".
Imported Source files of the external library "IOIPSL_Lionel" into "libf/IOIPSL". Split "cray.f90" into "scopy.f90" and "ssum.f90". Rewrote "leapfrog" in order to have a clearer algorithmic structure.
In "leapfrog", transformed some arrays with a single dimension for horizontal position into arrays with two horizontal dimensions. Simplified the computation of potential temperature and surface pressure at the poles.
Removed unused "diagedyn.f" and "undefSTD.f". In "etat0", the variable "dt" of module "temps" was defined from "landicered.nc", which was meaningless and useless. Replaced "dt" by a local trash variable. Removed variable "dt" from module "temps" and created instead a local variable of "leapfrog" and an argument of "integrd".
"dyn3d" and "filtrez" do not contain any included file so make rules have been updated. "comdissip.f90" was useless, removed it. "dynredem0" wrote undefined value in "controle(31)", that was overwritten by "dynredem1". Now "dynredem0" just writes 0 to "controle(31)". Removed arguments of "inidissip". "inidissip" now accesses the variables by use association. In program "etat0_lim", "itaufin" is not defined so "dynredem1" wrote undefined value to "controle(31)". Added argument "itau" of "dynredem1" to correct that. "itaufin" does not need to be a module variable (of "temps"), made it a local variable of "leapfrog". Removed calls to "diagedyn" from "leapfrog".
Moved variable "dtdiss" from module "comconst", variable "idissip" from module "conf_gcm_m" and all variables from module "comdissipn" to module "inidissip_m". "inidissip" creates file "inidissip.csv". "idissip" is no longer read from a namelist. Removed useless computation of "dtdiss" in procedure "iniconst".
Simplified "etat0_lim.sh" and "gcm.sh" because the full versions depended on personal arrangements for directories and machines. Translated included files into modules. Encapsulated procedures into modules. Moved variables from module "comgeom" to local variables of "inigeom". Deleted some unused variables in "comgeom". Moved variable "day_ini" from module "temps" to module "dynetat0_m". Removed useless test on variable "time" and useless "close" statement in procedure "leapfrog". Removed useless call to "inigeom" in procedure "limit".
Created directory "phylmd/Radlwsw". Split "radlwsw.f" in files containing a single procedure. Removed variable "itaufinp1" in "leapfrog".
Split "orografi.f": one file for each procedure. Put the created files in new directory "Orography". Removed argument "vcov" of procedure "sortvarc". Removed arguments "itau" and "time" of procedure "caldyn0". Removed arguments "itau", "time" and "vcov" of procedure "sortvarc0". Removed argument "time" of procedure "dynredem1". Removed NetCDF variable "temps" in files "start.nc" and "restart.nc", because its value is always 0. Removed argument "nq" of procedures "iniadvtrac" and "leapfrog". The number of "tracers read in "traceur.def" must now be equal to "nqmx", or "nqmx" must equal 4 if there is no file "traceur.def". Replaced variable "nq" by constant "nqmx" in "leapfrog". NetCDF variable for ozone field in "coefoz.nc" must now be called "tro3" instead of "r". Fixed bug in "zenang".
Superficial modifications
Deleted argument "presnivs" of "physiq", "ini_histhf", "ini_histhf3d", "ini_histday", "ini_histins", "ini_histrac", "phytrac". Access it from "comvert" instead. Replaced calls to NetCDF Fortran 77 interface by calls to Fortran 90 interface or to NetCDF95. Procedure "gr_phy_write_3d" now works with a variable of arbitrary size in the second dimension. Annotated use statements with "only" clause. Replaced calls to NetCDF interface version 2 by calls to Fortran 90 interface in "guide.f90" and "read_reanalyse.f". In "write_histrac", replaced calls to "gr_fi_ecrit" by calls to "gr_phy_write_2d" and "gr_phy_write_3d".
In module "regr_pr", rewrote scanning of horizontal positions as a single set of loops, using a mask. Added some "intent" attributes. In "dynredem0", replaced calls to Fortran 77 interface of NetCDF by calls to NetCDF95. Removed calls to "nf_redef", regrouped all writing operations. In "dynredem1", replaced some calls to Fortran 77 interface of NetCDF by calls to Fortran 90 interface. Renamed variable "nqmax" to "nq_phys". In "physiq", if "nq >= 5" then "wo" is computed from the parameterization of "Cariolle".
-- Minor change of behaviour: "etat0" does not compute "rugsrel" nor "radpas". Deleted arguments "radpas" and "rugsrel" of "phyredem". Deleted argument "rugsrel" of "phyetat0". "startphy.nc" does not contain the variable "RUGSREL". In "physiq", "rugoro" is set to 0 if not "ok_orodr". The whole program "etat0_lim" does not use "clesphys2". -- Minor modification of input/output: Created subroutine "read_clesphys2". Variables of "clesphys2" are read in "read_clesphys2" instead of "conf_gcm". "printflag" does not print variables of "clesphys2". -- Should not change any result at run time: References to module "numer_rec" instead of individual modules of "Numer_rec_Lionel". Deleted argument "clesphy0" of "calfis", "physiq", "conf_gcm", "leapfrog", "phyetat0". Deleted variable "clesphy0" in "gcm". "phyetat0" does not modify variables of "clesphys2". The program unit "gcm" does not modify "itau_phy". Added some "intent" attributes. "regr11_lint" does not call "polint".
-- Minor modification of input/output: Created procedure "read_logic". Variables of module "logic" are read by "read_logic" instead of "conf_gcm". Variable "offline" of module "conf_gcm" is read from namelist instead of "*.def". Deleted arguments "dtime", "co2_ppm_etat0", "solaire_etat0", "tabcntr0" and local variables "radpas", "tab_cntrl" of "phyetat0". "phyetat0" does not read "controle" in "startphy.nc" any longer. "phyetat0" now reads global attribute "itau_phy" from "startphy.nc". "phyredem" does not create variable "controle" in "startphy.nc" any longer. "phyredem" now writes global attribute "itau_phy" of "startphy.nc". Deleted argument "tabcntr0" of "printflag". Removed diagnostic messages written by "printflag" for comparison of the variable "controle" of "startphy.nc" and the variables read from "*.def" or namelist input. -- Removing unwanted functionality: Removed variable "lunout" from module "iniprint", replaced everywhere by standard output. Removed case "ocean == 'couple'" in "clmain", "interfsurf_hq" and "physiq". Removed procedure "interfoce_cpl". -- Should not change anything at run time: Automated creation of graphs in documentation. More documentation on input files. Converted Fortran files to free format: "phyredem.f90", "printflag.f90". Split module "clesphy" into "clesphys" and "clesphys2". Removed variables "conser", "leapf", "forward", "apphys", "apdiss" and "statcl" from module "logic". Added arguments "conser" to "advect", "leapf" to "integrd". Added local variables "forward", "leapf", "apphys", "conser", "apdiss" in "leapfrog". Added intent attributes. Deleted arguments "dtime" of "phyredem", "pdtime" of "flxdtdq", "sh" of "phytrac", "dt" of "yamada". Deleted local variables "dtime", "co2_ppm_etat0", "solaire_etat0", "length", "tabcntr0" in "physiq". Replaced all references to "dtime" by references to "pdtphys".
Added NetCDF directory "/home/guez/include" in "g95.mk" and "nag_tools.mk". Added some "intent" attributes in "PVtheta", "advtrac", "caladvtrac", "calfis", "diagedyn", "dissip", "vlspltqs", "aeropt", "ajsec", "calltherm", "clmain", "cltrac", "cltracrn", "concvl", "conema3", "conflx", "fisrtilp", "newmicro", "nuage", "diagcld1", "diagcld2", "drag_noro", "lift_noro", "SUGWD", "physiq", "phytrac", "radlwsw", "thermcell". Removed the case "ierr == 0" in "abort_gcm"; moved call to "histclo" and messages for end of run from "abort_gcm" to "gcm"; replaced call to "abort_gcm" in "leapfrog" by exit from outer loop. In "calfis": removed argument "pp" and variable "unskap"; changed "pksurcp" from scalar to rank 2; use "pressure_var"; rewrote computation of "zplev", "zplay", "ztfi", "pcvgt" using "dyn_phy"; added computation of "pls". Removed unused variable in "dynredem0". In "exner_hyb": changed "dellta" from scalar to rank 1; replaced call to "ssum" by call to "sum"; removed variables "xpn" and "xps"; replaced some loops by array expressions. In "leapfrog": use "pressure_var"; deleted variables "p", "longcles". Converted common blocks "YOECUMF", "YOEGWD" to modules. Removed argument "pplay" in "cvltr", "diagetpq", "nflxtr". Created module "raddimlw" from include file "raddimlw.h". Corrected call to "new_unit" in "test_disvert".
Created module from included file parafilt. Converted caldyn0 to free format. Added a rule to create cross-references with NAG. Added optional attribute in iniadvtrac. Suppressed argument nq in dynredem0 and dynredem1, using nqmx instead. Replaced some NetCDF calls by netcdf95 calls in dynredem0. Added intent attribute in dynredem0 and dynredem1. Annotated use statements with only clause, in dynredem1. Suppressed variable nq and argument of iniadvtrac in etat0. Added test on nqmx in etat0.
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