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Inline the list of files in `phylmd/CMakeLists.txt`. The drawback of reading a separate file `file_list` is that cmake seems not to reconfigure automatically when `file_list` is modified. Remove possibility to call nuage. So remove also variable `ok_newmicro`. (nuage is probably never used in LMDZ any longer, although it is still possible to use it in LMDZ.)
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