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Moved everything out of libf.
NaN to signalling NaN in gfortran_debug.mk. Removed unused procedures in getincom and getincom2. In procedure conf_interface, replaced call to getincom by new namelist. Moved procedure conf_interface into module interface_surf. Added variables sig1 and w01 to startphy.nc and restartphy.nc, for procedure cv_driver. Renamed (ema_)?work1 and (ema_)?work2 to sig1 and w01 in concvl and physiq. Deleted unused arguments of clmain, clqh and intersurf_hq, among which (y)?sollwdown. Following LMDZ, in physiq, read sollw instead of sollwdown from startphy.nc, write sollw instead of sollwdown to restartphy.nc. In procedure sw, initialized zfs[ud][pn]a[di], for runs where ok_ade and ok_aie are false. (Following LMDZ.) Added dimension klev to startphy.nc and restartphy.nc, and deleted dimension horizon_vertical. Made t_ancien and q_ancien two-dimensional NetCDF variables. Bug fix: in phyetat0, define ratqs, clwcon and rnebcon for vertical levels >=2. Bug fix: set mfg, p[de]n_[ud] to 0. when iflag_con >= 3. (Following LMDZ.)
In procedure, "addfi" access directly the module variable "dtphys" instead of going through an argument. In "conflx", do not create a local variable for temperature with reversed order of vertical levels. Instead, give an actual argument with reversed order in "physiq". Changed names of variables "rmd" and "rmv" from module "suphec_m" to "md" and "mv". In "hgardfou", print only the first temperature out of range found.
Changed handling of compiler in compilation system. Removed the prefix letters "y", "p", "t" or "z" in some names of variables. Replaced calls to NetCDF by calls to NetCDF95. Extracted "ioget_calendar" procedures from "calendar.f90" into a separate file. Extracted to a separate file, "mathop2.f90", procedures that were not part of the generic interface "mathop" in "mathop.f90". Removed computation of "dq" in "bilan_dyn", which was not used. In "iniadvtrac", removed schemes 20 Slopes and 30 Prather. Was not compatible with declarations of array sizes. In "clcdrag", "ustarhb", "vdif_kcay", "yamada4" and "coefkz", changed the size of some arrays from "klon" to "knon". Removed possible call to "conema3" in "physiq". Removed unused argument "cd" in "yamada".
Extracted ASCII art from "inigeom" into a separate text file in the documentation. "test_disvert" now creates a separate file for layer thicknesses. Moved variables from module "yomcst" to module "suphec_m" because this is where those variables are defined. Kept in "yomcst" only parameters of Earth orbit. Gave the attribute "parameter" to some variables of module "suphec_m". Variables of module "yoethf" were defined in procedure "suphec". Moved these definitions to a new procedure "yoethf" in module "yoethf_m".
Created directory "phylmd/Radlwsw". Split "radlwsw.f" in files containing a single procedure. Removed variable "itaufinp1" in "leapfrog".
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