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makelmdz_fcm @ 341

Last change on this file since 341 was 341, checked in by aslmd, 9 years ago
fix in LMDZ.COMMON/makelmdz_fcm cleaning arch.env was missing; link to fcm was not universal.
Property svn:executable set to ``*
File size: 17.1 KB

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1	#!/bin/bash
2	# $Id: makelmdz_fcm 1615 2012-02-10 15:42:26Z emillour $
3	# This is a script in Bash.
4
5	# FH : on ne crée plus le fichier arch.mk qui est supposé exister par
6	# FH : ailleurs.
7	# FH : ulterieurement, ce fichier sera pré-existant pour une série
8	# FH : de configurations en versions optimisées et debug qui seront
9	# FH : liés (ln -s) avec arch.mk en fonction de l'architecture.
10	# FH : Pour le moment, cette version est en test et on peut créer les
11	# FH : arch.mk en lançant une première fois makegcm.
12	#
13	##set -x
14	########################################################################
15	# options par defaut pour la commande make
16	########################################################################
17
18	dim="96x72x19"
19	physique=lmd
20	filtre=filtrez
21	grille=reg
22	couple=false
23	veget=false
24	sisvat=false
25	rrtm=false
26	chimie=false
27	chemistry=false
28	parallel=none
29	paramem="par"
30	compil_mod=prod
31	io=ioipsl
32	LIBPREFIX=""
33	cosp=false
34	bands=""
35	scatterers=""
36	job=1
37	full=''
38
39	LMDGCM=`/bin/pwd`
40	LIBOGCM=$LMDGCM/libo
41	LIBFGCM=$LMDGCM/libf
42	# path for optional packages, but default set to ".void_dir"
43	RRTM_PATH=$LMDGCM/.void_dir
44	SISVAT_PATH=$LMDGCM/.void_dir
45	COSP_PATH=$LMDGCM/.void_dir
46	CHEM_PATH=$LMDGCM/.void_dir
47	AERONO_PATH=$LMDGCM/.void_dir
48	# Path to fcm utility:
49	##fcm_path=$LMDGCM/tools/fcm/bin
50	fcm_path=$(dirname $(which fcm))
51	#fcm_path=/home/millour/FCM_V1.2/bin
52
53	########################################################################
54	# Quelques initialisations de variables du shell.
55	########################################################################
56
57	CPP_KEY=""
58	INCLUDE=""
59	LIB=""
60	adjnt=""
61	COMPIL_FFLAGS="%PROD_FFLAGS"
62	PARA_FFLAGS=""
63	PARA_LD=""
64	EXT_SRC=""
65
66	########################################################################
67	# lecture des options de mymake
68	########################################################################
69
70	while (($# > 0))
71	do
72	case $1 in
73	"-h") cat <<fin
74	Usage :
75	makegcm [options] -arch arch exec
76	[-h] : brief help
77	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
78	[-s nscat] : (Generic) Number of radiatively active scatterers
79	[-b IRxVIS] : (Generic) Number of infrared (IR) and visible (VIS) bands for radiative transfer
80	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
81	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug .
82	[-c false/MPI1/OMCT] : coupling with ocean model : MPI1/OMCT/false (default: false)
83	[-v false/orchidee2.0/orchidee1.9/true] : version of the vegetation model to include (default: false)
84	false : no vegetation model
85	orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version)
86	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
87	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
88	[-chimie INCA/false] : (Earth) with INCA chemistry model or without (default: false)
89	[-cosp cosp/false] : (Earth) add the cosp model (default: false)
90	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
91	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
92	[-io IO] : Input/Output library (default: ioipsl)
93	[-include INCLUDES] : extra include path to add
94	[-cpp CPP_KEY] : additional preprocessing definitions
95	[-adjnt] : adjoint model, not operational ...
96	[-mem] : reduced memory dynamics (if in parallel mode)
97	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
98	[-link LINKS] : additional links with other libraries
99	[-j n] : active parallel compiling on ntask
100	[-full] : full (re-)compilation (from scratch)
101	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
102	[-ext_src path] : path to an additional set of routines to compile with the model
103	-arch arch : target architecture
104	exec : executable to build
105	fin
106	exit;;
107
108	"-d")
109	dim=$2 ; shift ; shift ;;
110
111	"-p")
112	physique="$2" ; shift ; shift ;;
113
114	"-s")
115	scatterers=$2 ; shift ; shift ;;
116
117	"-b")
118	bands=$2 ; shift ; shift ;;
119
120	"-g")
121	grille="$2" ; shift ; shift ;;
122
123	"-c")
124	couple="$2" ; shift ; shift ;;
125
126	"-prod")
127	compil_mod="prod" ; shift ;;
128
129	"-dev")
130	compil_mod="dev" ; shift ;;
131
132	"-debug")
133	compil_mod="debug" ; shift ;;
134
135	"-io")
136	io="$2" ; shift ; shift ;;
137
138	"-v")
139	veget="$2" ; shift ; shift ;;
140
141	"-sisvat")
142	sisvat="$2" ; shift ; shift ;;
143
144	"-rrtm")
145	rrtm="$2" ; shift ; shift ;;
146
147	"-chimie")
148	chimie="$2" ; shift ; shift ;;
149
150	"-parallel")
151	parallel="$2" ; shift ; shift ;;
152
153	"-include")
154	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
155
156	"-cpp")
157	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
158
159	"-adjnt")
160	echo "not operational ... work to be done here ";exit
161	opt_dep="$opt_dep adjnt" ; adjnt="-ladjnt -ldyn3d "
162	optim="$optim -Dadj" ; shift ;;
163
164	"-cosp")
165	cosp="$2" ; shift ; shift ;;
166
167	"-mem")
168	paramem="mem" ; shift ;;
169
170	"-filtre")
171	filtre=$2 ; shift ; shift ;;
172
173	"-link")
174	LIB="$LIB $2" ; shift ; shift ;;
175
176	"-fcm_path")
177	fcm_path=$2 ; shift ; shift ;;
178
179	"-ext_src")
180	EXT_SRC=$2 ; shift ; shift ;;
181
182	"-j")
183	job=$2 ; shift ; shift ;;
184
185	"-full")
186	full="-full" ; shift ;;
187
188	"-arch")
189	arch=$2 ; shift ; shift ;;
190
191	*)
192	code="$1" ; shift ;;
193	esac
194	done
195
196	###############################################################
197	# path to fcm
198	###############################################################
199	# handle case when provided path to fcm was given as a relative
200	# path (from makelmdz_fcm script directory) and not an absolute path
201	if [[ ${fcm_path:0:1} != "/" ]] ; then
202	# prepend with makelmdz_fcm location
203	fcm_path=$(cd $(dirname $0) ; pwd)"/"${fcm_path}
204	fi
205
206	# add fcm_path to PATH
207	export PATH=${fcm_path}:${PATH}
208
209	echo "Path to fcm:"
210	echo ${fcm_path}
211
212	###############################################################
213	# lecture des chemins propres à l'architecture de la machine #
214	###############################################################
215	rm -f .void_file
216	echo > .void_file
217	rm -rf .void_dir
218	mkdir .void_dir
219	rm -f arch.path
220	rm -f arch.env
221	ln -s arch/arch-${arch}.path ./arch.path
222	ln -s arch/arch-${arch}.env ./arch.env
223	source arch.env
224	source arch.path
225
226	########################################################################
227	# Definition des clefs CPP, des chemins des includes et modules
228	# et des libraries
229	########################################################################
230
231	if [[ "$compil_mod" == "prod" ]]
232	then
233	COMPIL_FFLAGS="%PROD_FFLAGS"
234	elif [[ "$compil_mod" == "dev" ]]
235	then
236	COMPIL_FFLAGS="%DEV_FFLAGS"
237	elif [[ "$compil_mod" == "debug" ]]
238	then
239	COMPIL_FFLAGS="%DEBUG_FFLAGS"
240	fi
241
242	if [[ "$physique" != "nophys" ]]
243	then
244	#We'll use some physics
245	CPP_KEY="$CPP_KEY CPP_PHYS"
246	if [[ "${physique:0:3}" == "lmd" ]]
247	then
248	#For lmd physics, default planet type is Earth
249	CPP_KEY="$CPP_KEY CPP_EARTH"
250	fi
251	fi
252
253	if [[ "$chimie" == "INCA" ]]
254	then
255	CPP_KEY="$CPP_KEY INCA"
256	INCLUDE="$INCLUDE -I${INCA_INCDIR}"
257	LIB="$LIB -L${INCA_LIBDIR} -lchimie"
258	fi
259
260	if [[ "$couple" != "false" ]]
261	then
262	if [[ "$couple" == "MPI1" ]]
263	then
264	CPP_KEY="$CPP_KEY CPP_COUPLE"
265	export OASIS_INCDIR=$LMDGCM/../../prism/X64/build/lib/psmile.MPI1
266	export OASIS_LIBDIR=$LMDGCM/../../prism/X64/lib
267	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
268	LIB="$LIB -L${OASIS_LIBDIR} -lpsmile.MPI1 -lmpp_io"
269	else
270	CPP_KEY="$CPP_KEY CPP_COUPLE CPP_OMCT"
271	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
272	LIB="$LIB -L${OASIS_LIBDIR} -lpsmile.MPI1 -lscrip -lmct -lmpeu"
273	fi
274	fi
275
276	if [[ "$parallel" == "mpi" ]]
277	then
278	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
279	PARA_FFLAGS="%MPI_FFLAGS"
280	PARA_LD="%MPI_LD"
281	elif [[ "$parallel" == "omp" ]]
282	then
283	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
284	PARA_FFLAGS="%OMP_FFLAGS"
285	PARA_LD="%OMP_LD"
286	elif [[ "$parallel" == "mpi_omp" ]]
287	then
288	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
289	PARA_FFLAGS="%MPI_FFLAGS %OMP_FFLAGS"
290	PARA_LD="%MPI_LD %OMP_LD"
291	fi
292
293	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
294	&& "$compil_mod" == "debug" ]]
295	then
296	echo "Usually, parallelization with OpenMP requires some optimization."
297	echo "We suggest switching to \"-dev\"."
298	fi
299
300	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" ]
301	then
302	#NB: option 'true': for backward compatibility. To be used with ORCHIDEE tag 1.9-1.9.6
303	# For this case, cpp flag ORCHIDEE_NOOPENMP must be added to the makelmdz_fcm arguments
304	# option orchidee1.9 : Compile with ORCHIDEE version up to the inclusion of OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
305	INCLUDE="${INCLUDE} -I${ORCH_INCDIR}"
306	CPP_KEY="$CPP_KEY CPP_VEGET"
307	# temporary, for Orchidee versions 1.9.* (before openmp activation)
308	if [[ "$veget" == "orchidee1.9" ]] ; then
309	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
310	fi
311	if [[ "$veget" == "orchidee2.0" ]] ; then
312	orch_libs="sechiba parameters stomate parallel orglob orchidee"
313	else
314	orch_libs="sechiba parameters stomate parallel orglob"
315	fi
316	LIB="${LIB} -L${ORCH_LIBDIR}"
317	for lib in ${orch_libs} ; do
318	if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then
319	LIB="${LIB} -l${LIBPREFIX}$lib "
320	fi
321	done
322	elif [[ "$veget" != "false" ]] ; then
323	echo "Option -v $veget does not exist"
324	echo "Use ./makelmdz_fcm -h for more information"
325	exit
326	fi
327
328	if [[ "$sisvat" == "true" ]]
329	then
330	CPP_KEY="$CPP_KEY CPP_SISVAT"
331	SISVAT_PATH="$LIBFGCM/%PHYS/sisvat"
332	#sed -e 's/^#src::sisvat/src::sisvat/' bld.cfg > bld.tmp
333	#mv bld.tmp bld.cfg
334	fi
335
336	if [[ "$rrtm" == "true" ]]
337	then
338	CPP_KEY="$CPP_KEY CPP_RRTM"
339	RRTM_PATH="$LIBFGCM/%PHYS/rrtm"
340	#sed -e 's/^#src::rrtm/src::rrtm/' bld.cfg > bld.tmp
341	#mv bld.tmp bld.cfg
342	fi
343
344	if [[ $io == ioipsl ]]
345	then
346	CPP_KEY="$CPP_KEY CPP_IOIPSL"
347	INCLUDE="$INCLUDE -I${IOIPSL_INCDIR}"
348	LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl"
349	elif [[ $io == xios ]]
350	then
351	# For now, xios implies also using ioipsl
352	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
353	INCLUDE="$INCLUDE -I${IOIPSL_INCDIR} -I${XIOS_INCDIR}"
354	LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl -L${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios"
355	fi
356
357	if [[ "$cosp" == "true" ]]
358	then
359	CPP_KEY="$CPP_KEY CPP_COSP"
360	COSP_PATH="$LIBFGCM/cosp"
361	# LIB="${LIB} -l${LIBPREFIX}cosp"
362	fi
363
364	if [[ "$physique" == "titan" ]]
365	then
366	CHEM_PATH="${LIBFGCM}/chim${physique}"
367	INCLUDE="$INCLUDE -I${LIBFGCM}/chim${physique}"
368	fi
369
370	# for Mars (but could be used by others as well), there is also "aeronomars"
371	if [[ -d ${LIBFGCM}/aerono${physique} ]]
372	then
373	AERONO_PATH="${LIBFGCM}/aerono${physique}"
374	INCLUDE="$INCLUDE -I${LIBFGCM}/aerono${physique}"
375	fi
376
377	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
378	LIB="$LIB ${NETCDF_LIBDIR}"
379
380
381	########################################################################
382	# calcul du nombre de dimensions
383	########################################################################
384
385
386	dim_full=$dim
387	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
388	set $dim
389	dimc=$#
390	echo calcul de la dimension
391	echo dim $dim
392	echo dimc $dimc
393
394
395	########################################################################
396	# Gestion des dimensions du modele.
397	# on cree ou remplace le fichier des dimensions
398	########################################################################
399
400	cd $LIBFGCM/grid
401	if [[ -f dimensions.h ]]
402	then
403	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
404	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
405	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
406	echo vous pouvez continuer en repondant oui.
407	echo "Voulez-vous vraiment continuer?"
408	echo ""
409	echo "WARNING: you are probably already compiling the model somewhere else."
410	echo "Wait until the first compilation is finished before launching this one."
411	echo "If you are sure that you are not compiling elsewhere, just answer "
412	echo "yes (or 'oui') to the question below to proceed."
413	echo "Do you wish to continue?"
414	read reponse
415	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
416	then
417	\rm -f $LIBFGCM/grid/dimensions.h
418	else
419	exit
420	fi
421	fi
422
423
424	cd $LIBFGCM/grid/dimension
425	./makdim $dim
426	cat $LIBFGCM/grid/dimensions.h
427	cd $LMDGCM
428
429	if [[ "$bands" != "" ]]
430	then
431	# Generic model, recreate bands.h (IR & VIS bands for radiative transfer)
432	bands=$(echo $bands \| sed -e 's/[^0-9]/ /g')
433	cd $LIBFGCM/phy$physique/bands
434	./makbands $bands
435	cat $LIBFGCM/phy$physique/bands.h
436	cd $LMDGCM
437	fi
438
439	if [[ "$scatterers" != "" ]]
440	then
441	# Generic model, recreate scatterers.h
442	cd $LIBFGCM/phy$physique/scatterers
443	./make_scatterers $scatterers
444	cat $LIBFGCM/phy$physique/scatterers.h
445	cd $LMDGCM
446	fi
447
448
449	########################################################################
450	# Differentes dynamiques (3d, 2d, 1d)
451	########################################################################
452
453	dimension=`echo $dim \| wc -w`
454	echo dimension $dimension
455
456	if (( $dimension == 3 ))
457	then
458	cd $LIBFGCM/grid
459	\rm fxyprim.h
460	cp -p fxy_${grille}.h fxyprim.h
461	#else
462	# echo "Probleme dans les dimensions de la dynamique !!"
463	# echo "Non reactive pour l'instant !!!"
464	fi
465
466	if (( $dimension == 1 ))
467	then
468	##in 1D, add dyn3d to include path (because main prog is in physics)
469	INCLUDE="$INCLUDE -Ilibf/dyn3d"
470	# echo pas de dynamique
471	# dyn="DYN= L_DYN=-ldyn3d "
472	fi
473
474	######################################################################
475	# Traitement special pour le nouveau rayonnement de Laurent Li.
476	# ---> YM desactive pour le traitemement en parallele
477	######################################################################
478
479	#if [[ -f $libf/phy$physique/raddim.h ]]
480	#then
481	# if [[ -f $libf/phy$physique/raddim.$dimh.h ]]
482	#then
483	# \rm -f $libf/phy$physique/raddim.h
484	# cp -p $libf/phy$physique/raddim.$dimh.h $libf/phy$physique/raddim.h
485	# echo $libf/phy$physique/raddim.$dimh.h
486	# cat $libf/phy$physique/raddim.h
487	# else
488	# echo On peut diminuer la taille de l executable en creant
489	# echo le fichier $libf/phy$physique/raddim.$dimh.h
490	# \cp -p $libf/phy$physique/raddim.defaut.h $libf/phy$physique/raddim.h
491	# fi
492	#fi
493
494	######################################################################
495	# Gestion du filtre qui n'existe qu'en 3d.
496	######################################################################
497
498	if (( `expr $dimc \> 2` == 1 ))
499	then
500	filtre="FILTRE=$filtre"
501	else
502	filtre="FILTRE= L_FILTRE= "
503	fi
504	echo MACRO FILTRE $filtre
505
506	echo $dimc
507
508
509
510	######################################################################
511	# Creation du suffixe de la configuration
512	######################################################################
513
514
515	SUFF_NAME=_${dim_full}
516	SUFF_NAME=${SUFF_NAME}_phy${physique}
517
518	if [[ "$parallel" != "none" ]]
519	then
520	SUFF_NAME=${SUFF_NAME}_para
521	DYN=dyn${dimc}d${paramem}
522	if [[ "$paramem" == "mem" ]]
523	then
524	SUFF_NAME=${SUFF_NAME}_${paramem}
525	fi
526	else
527	SUFF_NAME=${SUFF_NAME}_seq
528	DYN=dyn${dimc}d
529	## specific stuff for 1D model (needs includes which are in dyn3d)
530	if (( $dimension == 1 )) ; then
531	SUFF_NAME=${SUFF_NAME}
532	DYN=dyn3d
533	fi
534	fi
535
536	if [[ $veget != "false" ]]
537	then
538	SUFF_NAME=${SUFF_NAME}_orch
539	fi
540
541	if [[ $couple != "false" ]]
542	then
543	SUFF_NAME=${SUFF_NAME}_couple
544	fi
545
546	if [[ $chimie == "INCA" ]]
547	then
548	SUFF_NAME=${SUFF_NAME}_inca
549	fi
550
551	cd $LMDGCM
552	config_fcm="config.fcm"
553	rm -f $config_fcm
554	touch $config_fcm
555	rm -f bin/${code}${SUFF_NAME}.e
556	rm -f arch.fcm
557	rm -f arch.opt
558
559	echo "%ARCH $arch" >> $config_fcm
560	echo "%INCDIR $INCLUDE" >> $config_fcm
561	echo "%LIB $LIB" >> $config_fcm
562	echo "%ROOT_PATH $PWD" >> $config_fcm
563	echo "%LIBF $LIBFGCM" >> $config_fcm
564	echo "%LIBO $LIBOGCM" >> $config_fcm
565	echo "%DYN $DYN" >> $config_fcm
566	echo "%PHYS phy${physique}" >> $config_fcm
567	echo "%RRTM $RRTM_PATH" >> $config_fcm
568	echo "%SISVAT $SISVAT_PATH" >> $config_fcm
569	echo "%COSP $COSP_PATH" >> $config_fcm
570	echo "%CHEM $CHEM_PATH" >> $config_fcm
571	echo "%AERONO $AERONO_PATH" >> $config_fcm
572	echo "%CPP_KEY $CPP_KEY" >> $config_fcm
573	echo "%EXEC $code" >> $config_fcm
574	echo "%SUFF_NAME $SUFF_NAME" >> $config_fcm
575	echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> $config_fcm
576	echo "%PARA_FFLAGS $PARA_FFLAGS" >> $config_fcm
577	echo "%PARA_LD $PARA_LD" >> $config_fcm
578	echo "%EXT_SRC $EXT_SRC" >> $config_fcm
579
580
581
582	ln -s arch/arch-${arch}.fcm arch.fcm
583	if test -f arch/arch-${arch}.opt && [ $compil_mod = "prod" ]
584	then
585	ln -s arch/arch-${arch}.opt arch.opt
586	else
587	ln -s .void_file arch.opt
588	fi
589
590
591	rm -f $LIBOGCM/${arch}${SUFF_NAME}/.config/fcm.bld.lock
592	./build_gcm ${fcm_path} -j $job $full
593
594	rm -rf tmp_src
595	rm -rf config
596	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config config
597	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config/tmp tmp_src
598
599	#eventual cleanup for SISVAT
600	#sed -e 's/^src::sisvat/#src::sisvat/' bld.cfg > bld.tmp
601	#mv bld.tmp bld.cfg
602
603	#eventual cleanup for RRTM
604	#sed -e 's/^src::rrtm/#src::rrtm/' bld.cfg > bld.tmp
605	#mv bld.tmp bld.cfg
606
607
608	if [[ -r $LIBFGCM/grid/dimensions.h ]]
609	then
610	# Cleanup: remove dimension.h file
611	\rm -f $LIBFGCM/grid/dimensions.h
612	fi

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