[615] | 1 | #!/bin/bash |
---|
| 2 | |
---|
| 3 | function log() |
---|
| 4 | { |
---|
| 5 | echo $* |
---|
| 6 | $* |
---|
| 7 | } |
---|
| 8 | |
---|
| 9 | function full_dir() |
---|
| 10 | { |
---|
| 11 | (cd -P $1 ; pwd) |
---|
| 12 | } |
---|
| 13 | |
---|
| 14 | #--------------- Generate kernels, invoked by : './make_python kernels' --------------- |
---|
| 15 | |
---|
| 16 | function update() |
---|
| 17 | { |
---|
| 18 | diff $2 $1 || log cp -pr $1 $2 |
---|
| 19 | } |
---|
| 20 | |
---|
[626] | 21 | function cmd_clean() # this function is invoked by : './make_python clean' |
---|
| 22 | { |
---|
| 23 | rm -f lib/*.so lib/dynamico |
---|
| 24 | cd $KERNELS/src |
---|
| 25 | rm -rf *.o *.so build/ |
---|
| 26 | } |
---|
| 27 | |
---|
[615] | 28 | function cmd_kernels() # this function is invoked by : './make_python kernels' |
---|
| 29 | { |
---|
| 30 | cd $KERNELS |
---|
| 31 | ./codegen hexagonal unstructured |
---|
| 32 | |
---|
| 33 | cd $KERNELS/src/hexagonal |
---|
| 34 | for x in *.k90 ; do |
---|
| 35 | update "$x" "$DYNAMICO_ROOT/src/kernels_hex/$x" |
---|
| 36 | done |
---|
| 37 | |
---|
| 38 | cd $KERNELS/src/unstructured |
---|
| 39 | for x in *.k90 ; do |
---|
| 40 | update "$x" "$DYNAMICO_ROOT/src/kernels_unst/$x" |
---|
| 41 | done |
---|
| 42 | |
---|
| 43 | # make sure to recompile dynamics |
---|
| 44 | cd $DYNAMICO_ROOT |
---|
[654] | 45 | touch src/dynamics/*.F90 src/diagnostics/*.F90 src/transport/*.F90 src/unstructured/*.F90 |
---|
[615] | 46 | } |
---|
| 47 | |
---|
| 48 | #------------------ Default action , invoked by : './make_python' -------------------- |
---|
| 49 | |
---|
| 50 | function make_so() |
---|
| 51 | { |
---|
| 52 | ARLIB=$1 |
---|
| 53 | SOLIB=$2 |
---|
[621] | 54 | |
---|
[615] | 55 | if [[ $ARLIB -nt $SOLIB ]]; then |
---|
| 56 | echo $ARLIB is newer than $SOLIB |
---|
[621] | 57 | rm -f tmp.a |
---|
| 58 | cp $ARLIB tmp.a |
---|
[626] | 59 | if [[ "$4" != "" ]] ; then ar vd tmp.a $4 ; fi |
---|
| 60 | if [[ "$5" != "" ]] ; then ar vr tmp.a $5 ; fi |
---|
[621] | 61 | log $LINK $SOFLAGS $WHOLE_ARCHIVE tmp.a $NO_WHOLE_ARCHIVE $3 -o $SOLIB |
---|
| 62 | rm -f tmp.a |
---|
[615] | 63 | $LDD $SOLIB |
---|
| 64 | fi |
---|
| 65 | } |
---|
| 66 | |
---|
| 67 | |
---|
| 68 | function cmd_() |
---|
| 69 | { |
---|
[626] | 70 | echo "XIOS_ROOTDIR : $XIOS_ROOTDIR" |
---|
[621] | 71 | MISSING="" |
---|
| 72 | for module in netCDF4 jinja2 mpi4py; do |
---|
| 73 | echo "import $module" |
---|
| 74 | python -c "import $module" || MISSING="$MISSING $module" |
---|
| 75 | done |
---|
| 76 | if [[ "$MISSING" == "" ]] ; then |
---|
| 77 | echo "All required Python modules seem present." |
---|
| 78 | else |
---|
| 79 | echo "Missing/dysfunctional python modules : $MISSING" |
---|
| 80 | echo "Please fix your Python configuration" |
---|
| 81 | exit |
---|
| 82 | fi |
---|
| 83 | |
---|
| 84 | log mpicc -c -std=c99 -fPIC $PARMETIS_CFLAGS Python/src/partition.c -o obj/partition.o |
---|
[615] | 85 | make_so $XIOS_ROOTDIR/lib/libxios.a $LIBDIR/libxios.so "$NETCDF_LDFLAGS" |
---|
[621] | 86 | make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios $KERNELS_LDFLAGS" "physics_external_mod.o physics_mod.o timeloop_gcm_mod.o icosa_init_mod.o" obj/partition.o |
---|
[615] | 87 | |
---|
| 88 | # Cythonize Python modules |
---|
| 89 | cd $DYNAMICO_ROOT/Python/src |
---|
[641] | 90 | NUMPY=$(python -c 'import numpy as np ; print np.get_include()') |
---|
[621] | 91 | CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR -licosa $KERNELS_LDFLAGS" |
---|
[641] | 92 | LDSHARED="$LINK" CFLAGS="-fno-strict-aliasing -O2 -I$NUMPY" LDFLAGS="$CYTHONFLAGS" log python setup.py build_ext --inplace || exit |
---|
[662] | 93 | |
---|
[621] | 94 | cp -fpr $DYNAMICO_ROOT/Python/dynamico $DYNAMICO_ROOT/lib |
---|
| 95 | cp -fp *.so $DYNAMICO_ROOT/lib/dynamico/ |
---|
| 96 | cd $DYNAMICO_ROOT |
---|
| 97 | |
---|
[662] | 98 | for module in xios unstructured meshes dyn time_step DCMIP; do |
---|
[621] | 99 | echo "from dynamico import $module" |
---|
[662] | 100 | LD_PRELOAD=$PYTHON_PRELOAD python -c "from dynamico import $module" |
---|
[621] | 101 | done |
---|
[615] | 102 | } |
---|
| 103 | |
---|
| 104 | #------------------------- script starts here ------------------------ |
---|
| 105 | |
---|
| 106 | DYNAMICO_ROOT=$PWD |
---|
| 107 | LIBDIR=$DYNAMICO_ROOT/lib |
---|
| 108 | KERNELS=$DYNAMICO_ROOT/Python |
---|
| 109 | |
---|
| 110 | . arch.env |
---|
| 111 | . arch.path |
---|
| 112 | |
---|
| 113 | echo "Selected architecture : $CURRENT_ARCH" |
---|
| 114 | |
---|
| 115 | if [[ "$CURRENT_ARCH" == "" ]] ; then echo "Current architecture undefined or unsupported" ; exit ; fi |
---|
| 116 | |
---|
| 117 | . Python/env/${CURRENT_ARCH}.env |
---|
| 118 | |
---|
| 119 | cmd_$1 |
---|