#!/bin/bash # This script provides site-specific functions # called by the site-independent scripts # create_runs.sh and submit.sh # NB : we must use the queue 'normal' because there seems to be a limit # on the number of jobs that can be submitted to queue 'test' #----------------------------- split_XXX ---------------------------- function split_serial_40() { setvar nbp 41 nsplit_i 2 nsplit_j 2 } function split_mpi_40() { setvar nbp 41 nsplit_i 2 nsplit_j 2 } function split_mpi_80() { setvar nbp 81 nsplit_i 4 nsplit_j 2 } function split_mpi_omp_40() { setvar nbp 41 nsplit_i 2 nsplit_j 2 omp_level_size 4 } #----------------- job submission ------------------ function submit_job_X64_CURIE() # $1=script $* = SLURM OPTIONS { TMP=$(mktemp) ccc_msub $1 > $TMP cat $TMP 1>&2 cat $TMP | awk '{print $NF }' rm -f $TMP } #------------------------------ job_XXX ----------------------------- # Serial jobs function job_serial() { # EXP_NAME job_X64_CURIE $1 1 1 "./gcm.exe" } function job_serial_40() { # EXP_NAME job_serial $1 } # MPI jobs function job_mpi() { #EXP_NAME NB_MPI job_X64_CURIE $1 $2 1 "ccc_mprun ./gcm.exe" } function job_mpi_40() { # EXP_NAME job_mpi $1 40 } function job_mpi_80() { # EXP_NAME job_mpi $1 80 } # MPI-OMP jobs function job_mpi_omp() { #EXP_NAME NB_MPI NB_OMP job_X64_CURIE $1 $2 $3 "ccc_mprun ./gcm.exe" } function job_mpi_omp_40() { # EXP_NAME job_mpi_omp $1 40 4 } # Generic function job_X64_CURIE() { # EXP_NAME MPI_TASKS OMP_TASKS MPIRUN cat < gcm.log ulimit -s unlimited $4 >> gcm.log date >> gcm.log mkdir -p netcdf cp gcm.log *.def netcdf mv *.nc netcdf mkdir -p logs cp *.xml logs mv xios_client_*.err xios_client_*.out gcm.log logs EOF } #------------------------------ post-processing job ----------------------------- function job_post_X64_CURIE() # LIST { DEPLIST=afterany for ID in $* ; do DEPLIST="$DEPLIST:$ID" done cat <