source: configs/testing/bash/xml.sh @ 716

Last change on this file since 716 was 716, checked in by dubos, 6 years ago

testing : add new diagnostics to XML
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1function xml_iodef() {
2cat <<EOF
3<?xml version="1.0"?>
4<simulation> 
5        <context  id="xios">
6                <variable_definition>
7                <variable id="print_file" type="bool"> true </variable>
8                <variable_group id="buffer">
9                </variable_group>
10
11                <variable_group id="parameters" >
12                        <variable id="using_server" type="bool">false</variable>
13                        <variable id="info_level" type="int">1</variable>
14                </variable_group>
15                </variable_definition>
16        </context>
17        <context id="icosagcm" src="./icosa.xml" />
18</simulation>
19EOF
20}
21
22function xml_icosa() {
23cat <<EOF
24<context id="icosagcm" >
25  <calendar type="d360" start_date="2000-01-01 00:00:00" time_origin="2000-01-01 00:00:00"/>
26 
27  <field_definition src="./field_def.xml" />
28
29  <file_definition src="./filedef_dcmip2016.xml" />
30
31  <file_definition type="one_file" par_access="collective">
32
33    <file id="output" name="output" enabled=".FALSE."  output_freq="2h" sync_freq="2h" output_level="10" >
34      <field_group group_ref="standard_output"/>
35    </file>
36
37    <file id="restart" name="restart" enabled="true">
38       <field_group id="group_restart" operation="once">
39          <field id="it_restart" name="iteration"  grid_ref="scalar" />
40          <field id="q_restart" name="q"  grid_ref="grid_q" />
41          <field_group domain_ref="i">
42             <field id="ps_restart" name="ps" />
43             <field id="phis_restart" name="phis" />
44             <field_group axis_ref="lev" >
45                <field id="theta_rhodz_restart" name="theta_rhodz" />
46                <field id="u_restart" name="u" domain_ref="u"/>
47                <field id="ulon_restart" name="ulon" />
48                <field id="ulat_restart" name="ulat" />
49             </field_group>
50             <field_group axis_ref="levp1" >
51                <field id="W_restart" name="W" />
52                <field id="geopot_restart" name="geopot" />
53             </field_group>
54          </field_group>
55       </field_group>
56    </file>
57
58    <file id="start" name="start" enabled="false" mode="read">
59       <field_group id="group_start" operation="once">
60          <field id="it_start" name="iteration"  grid_ref="scalar" enabled="false"/>
61          <field id="q_start" name="q"  grid_ref="grid_q_read" />
62          <field_group domain_ref="i">
63             <field id="ps_start" name="ps" />
64             <field id="phis_start" name="phis" />
65             <field_group axis_ref="lev_read" >
66                <field id="theta_rhodz_start" name="theta_rhodz" />
67                <field id="u_start" name="u" domain_ref="u"/>
68                <field id="ulon_start" name="ulon" />
69                <field id="ulat_start" name="ulat" />
70             </field_group>
71             <field_group axis_ref="levp1" >
72                <field id="W_start" name="W" />
73                <field id="geopot_start" name="geopot" />
74             </field_group>
75          </field_group>
76       </field_group>
77    </file>
78
79   
80  </file_definition>
81   
82  <axis_definition>
83    <axis id="lev" name="lev" positive="down" standard_name="atmopshere_hybrid_sigma_pressure_coordinate" long_name="hybrid level at midpoints" />
84    <axis id="lev_read" />
85    <axis id="levp1" name="ilev"  unit="level" positive="down" standard_name="atmopshere_hybride_sigma_pressure_coordinate" long_name="hybrid level at interface" />
86    <axis id="lev_pressure" positive="down"  n_glo="2" unit="Pa" value="(0,1)[85000 50000]" >
87      <interpolate_axis order="1" coordinate="p" />
88    </axis>   
89    <axis id="nq" name="nq" n_glo="5" value="(0,4)[1 2 3 4 5]"/>
90  </axis_definition>   
91 
92  <domain_definition>
93   
94     <domain_group id="i">
95       <domain id="i" name="mesh"/>     
96     </domain_group>
97     
98     
99     <domain id="v" />
100     <domain id="u" />
101     
102     <domain id="regular_half_degree" type="rectilinear" ni_glo="720" nj_glo="360" >
103       <generate_rectilinear_domain />
104       <interpolate_domain order="1"/>
105     </domain>
106     
107     <domain id="regular_one_degree" type="rectilinear" ni_glo="360" nj_glo="180" >
108       <generate_rectilinear_domain />
109       <interpolate_domain order="1"/>
110     </domain>
111     
112     <domain id="regular_two_degree" type="rectilinear" ni_glo="180" nj_glo="90" >
113       <generate_rectilinear_domain />
114       <interpolate_domain order="1"/>
115     </domain>
116     
117  </domain_definition>   
118 
119  <grid_definition>   
120    <grid id="scalar">
121      <scalar />
122    </grid>
123   
124    <grid id="grid_q">
125      <domain domain_ref="i" />
126      <axis axis_ref="lev" />
127      <axis axis_ref="nq" />
128    </grid >
129
130    <grid id="grid_q_read">
131      <domain domain_ref="i" />
132      <axis axis_ref="lev_read" />
133      <axis axis_ref="nq" />
134    </grid >
135 
136    <grid id="grid_q_regular">
137      <domain domain_ref="regular_two_degree" />
138      <axis axis_ref="lev" />
139      <axis axis_ref="nq" />
140    </grid >
141  </grid_definition>   
142 
143</context>
144EOF
145}
146
147function xml_field_def() {
148    cat <<EOF
149<field_definition level="1" enabled=".TRUE." operation="instant">
150 
151  <field_group id="standard_output">
152   
153    <field id="timestep" grid_ref="scalar" unit="s"/>
154    <field id="preff" grid_ref="scalar"    unit="Pa"/>
155    <field id="ap" axis_ref="levp1"   long_name="hybrid A coefficient at layer interface" />
156    <field id="bp" axis_ref="levp1"  long_name="hybrid B coefficient at layer interface" />
157    <field id="mid_ap" axis_ref="lev"   long_name="hybrid A coefficient at midpoints" />
158    <field id="mid_bp" axis_ref="lev"  long_name="hybrid B coefficient at midpoints" />
159   
160    <field_group domain_ref="i">
161      <field id="ps" />
162      <field id="dps"  />
163      <field id="Ai" />
164      <field id="phis" />
165      <field id="phi" />
166      <field id="precl" />
167      <field id="Q1_col_int" />     
168      <field id="Q2_col_int" />     
169      <field id="ps_init" />
170     
171      <field_group axis_ref="lev">
172        <field id="mass" />
173        <field id="p" />
174        <field id="dmass"/>
175        <field id="theta" />
176        <field id="dyn_q" />
177        <field id="pk"/>
178        <field id="ulon"/>
179        <field id="ulat"/>
180        <field id="uz"/>
181        <field id="omega"/>
182        <field id="temp"/>
183       
184        <field id="mass_init" />
185        <field id="p_init" />
186        <field id="theta_init" />
187        <field id="dyn_q_init" />
188        <field id="ulon_init"/>
189        <field id="ulat_init"/>
190        <field id="uz_init"/>
191        <field id="temp_init"/>
192       
193        <field id="mass_t"           long_name="Time-averaged air mass"   unit="kg/m2"/>
194        <field id="massflux_lon"     long_name="Time-averaged air mass flux, zonal"   unit="kg/m/s"/>
195        <field id="massflux_lat"     long_name="Time-averaged air mass flux, meridional"   unit="kg/m/s"/>
196
197        <field id="ulon_t"           long_name="Time-averaged zonal momentum"   unit="kg/m/s"/>
198        <field id="ulonflux_lon"     long_name="Time-averaged zonal momentum flux, zonal"   unit="kg/s2"/>
199        <field id="ulonflux_lat"     long_name="Time-averaged zonal momentum flux, meridional"   unit="kg/s2"/>
200
201        <field id="theta_t"          long_name="Time-averaged potential temperature"   unit="K.kg/m2"/>
202        <field id="thetaflux_lon"    long_name="Time-averaged potential temperature flux, zonal"   unit="K.kg/m/s"/>
203        <field id="thetaflux_lat"    long_name="Time-averaged potential temperature flux, meridional"   unit="K/kg/m/s"/>
204
205        <field id="epot_t"           long_name="Time-averaged potential energy"   unit="J/m2"/>
206        <field id="epotflux_lon"     long_name="Time-averaged potential energy flux, zonal"   unit="J/m/s"/>
207        <field id="epotflux_lat"     long_name="Time-averaged potential energy flux, meridional"   unit="J/m/s"/>
208
209        <field id="ekin_t"           long_name="Time-averaged kinetic energy"   unit="J/m2"/>
210        <field id="ekinflux_lon"     long_name="Time-averaged kinetic energy flux, zonal"   unit="J/m/s"/>
211        <field id="ekinflux_lat"     long_name="Time-averaged kinetic energy flux, meridional"   unit="J/m/s"/>
212       
213        <field id="enthalpy_t"       long_name="Time-averaged enthalpy"   unit="J/m2"/>
214        <field id="enthalpyflux_lon" long_name="Time-averaged enthalpy flux, zonal"   unit="J/m/s"/>
215        <field id="enthalpyflux_lat" long_name="Time-averaged enthalpy flux, meridional"   unit="J/m/s"/>
216
217        <field id="dulon_diss1"/>
218        <field id="dulon_diss2"/>
219        <field id="dulat_diss1"/>
220        <field id="dulat_diss2"/>
221
222        <field id="dulon_phys"       long_name="Physics tendency for zonal velocity"   unit="m/s^2"/>
223        <field id="dulat_phys"       long_name="Physics tendency for meridional velocity"   unit="m/s^2"/>
224
225      </field_group>
226
227      <field id="u850" />
228      <field id="v850" />
229      <field id="w850" />
230      <field id="t850" />
231      <field id="omega850"/>                 
232      <field id="u500" />
233      <field id="v500" />
234      <field id="w500" />
235      <field id="t500" />
236      <field id="omega500"/>                 
237      <field id="SST"/>
238     
239      <field id="ulon_850_500" field_ref="p" axis_ref="lev_pressure" />
240     
241      <field_group axis_ref="levp1">
242        <field id="geopot"/>
243        <field id="geopot_init"/>
244      </field_group>
245    </field_group>
246
247    <field_group grid_ref="grid_q">
248      <field id="q_init" />
249      <field id="q" />
250      <field id="qmass_t" />
251      <field id="qflux_lon" />
252      <field id="qflux_lat" />
253    </field_group>
254
255    <field_group domain_ref="v" axis_ref="lev">
256      <field id="vort" />
257      <field id="pv" />
258    </field_group>
259   
260  </field_group>
261 
262 
263</field_definition>
264
265EOF
266}
267
268function xml_dcmip() { # EXPNAME OUTPUT_GRID OUTPUT_FREQ
269EXPNAME=$1
270OUTPUT_GRID=$2
271OUTPUT_FREQ=$3
272NBP=80 # FIXME
273LLM=10 # FIXME
274cat <<EOF
275<file_definition > 
276
277  <file id="output_dcmip2016_native" convention="CF" enabled="false" output_freq="$OUTPUT_FREQ" sync_freq="$OUTPUT_FREQ" output_level="10" timeseries="none" description="$EXPNAME" >
278   
279    <field_group id="dcmip2016_output_field_once" operation="once" freq_offset="0ts" ts_enabled="true">
280      <field field_ref="timestep" name="mdt" />
281      <field field_ref="preff" name="P0" long_name="reference pressure" />
282      <field field_ref="ap" name="hyai"   />
283      <field field_ref="bp" name="hybi"   />
284      <field field_ref="mid_ap" name="hyam"   />
285      <field field_ref="mid_bp" name="hybm"   />
286    </field_group>
287   
288    <field_group id="init_fields" operation="once" freq_offset="0ts" ts_enabled="true">
289      <field field_ref="temp_init"   />
290      <field field_ref="uz_init"     />
291      <field field_ref="ulon_init"   />
292      <field field_ref="ulat_init"   />
293      <field field_ref="p_init"      />
294      <field field_ref="ps_init"     />
295      <field field_ref="mass_init"   />
296      <field field_ref="geopot_init" />
297    </field_group>
298   
299    <field_group id="dcmip2016_output_field" ts_enabled="true">
300      <field field_ref="ps" name="PS"       standard_name="surface_pressure" long_name="Surface pressure"         unit="Pa" />
301      <field field_ref="phis" operation="once" freq_offset="0ts" name="PHIS"   standard_name="surface_geopotential" long_name="Surface geopotential" unit="m2/m2"/>
302      <field field_ref="geopot"  name="PHI"   standard_name="geopotential" long_name="geopotential" unit="m2/s2"/>
303      <field field_ref="ulon" name="U"      standard_name="eastward_wind" long_name="Zonal wind"                  unit="m/s"/>
304      <field field_ref="ulat" name="V"      standard_name="northward_wind" long_name="Meridional wind"            unit="m/s"/>
305      <field field_ref="uz" name="W"        standard_name="upward_air_velocity" long_name="Vertical velocity"     unit="m/s"/>
306      <field field_ref="omega" name="OMEGA"        standard_name="lagrangian_tendency_of_air_pressure" long_name="Vertical pressure velocity"     unit="Pa/s"/>
307      <field field_ref="p"  name="P"        standard_name="air_pressure" long_name="Pressure"     unit="Pa"/>
308      <field field_ref="temp"  name="T"        standard_name="air_temperature" long_name="Temperature"     unit="K"/>
309      <field field_ref="precl"  name="PRECT"     standard_name="rainfall_rate"  long_name="Large Scale precipitation rate"  unit="m/s"/>
310      <field field_ref="Q1_col_int"  name="Q1_col_int"      long_name="Single chlorine column integrated mixing ratio"  unit="kg/m2"/>
311      <field field_ref="Q2_col_int"  name="Q2_col_int"      long_name="Chlorine gas column integrated mixing ratio"  unit="kg/m2"/>
312      <field field_ref="u850" name="U850"       long_name="Zonal wind at 850 hPa"      unit="m/s"/>
313      <field field_ref="v850" name="V850"       long_name="Meridional wind at 850 hPa"   unit="m/s"/>
314      <field field_ref="w850" name="W850"       long_name="Vertical velocity at 850 hPa"     unit="m/s"/>
315      <field field_ref="t850" name="T850"       long_name="Temperature at 850 hPa"   unit="K"/>
316      <field field_ref="omega850" name="OMEGA850"   long_name="Vertical pressure velocity at 850 hPa"     unit="Pa/s"/>
317      <field field_ref="u500" name="U500"       long_name="Zonal wind at 500 hPa"      unit="m/s"/>
318      <field field_ref="v500" name="V500"       long_name="Meridional wind at 850 hPa"   unit="m/s"/>
319      <field field_ref="w850" name="W500"       long_name="Vertical velocity at 500 hPa"     unit="m/s"/>
320      <field field_ref="t500" name="T500"       long_name="Temperature at 850 hPa"   unit="K"/>
321      <field field_ref="omega500" name="OMEGA500"   long_name="Vertical pressure velocity at 500 hPa"     unit="Pa/s"/>
322      <field field_ref="SST" name="SST"       long_name="Sea surface temperature"   unit="K"/>
323     
324      <field field_ref="mass_t" name="mass_t"                   long_name="Time-averaged air mass"   unit="kg/m2"/>
325      <field field_ref="massflux_lon" name="massflux_lon"       long_name="Time-averaged air mass flux, zonal"   unit="kg/m/s"/>
326      <field field_ref="massflux_lat" name="massflux_lat"       long_name="Time-averaged air mass flux, meridional"   unit="kg/m/s"/>
327
328      <field field_ref="epot_t" name="epot_t"                   long_name="Time-averaged potential energ"   unit="J/m2"/>
329      <field field_ref="epotflux_lon" name="epotflux_lon"       long_name="Time-averaged potential energy flux, zonal"   unit="J/m/s"/>
330      <field field_ref="epotflux_lat" name="epotflux_lat"       long_name="Time-averaged potential energy flux, meridional"   unit="J/m/s"/>
331
332      <field field_ref="ekin_t" name="ekin_t"                   long_name="Time-averaged kinetic energ"   unit="J/m2"/>
333      <field field_ref="ekinflux_lon" name="ekinflux_lon"       long_name="Time-averaged kinetic energy flux, zonal"   unit="J/m/s"/>
334      <field field_ref="ekinflux_lat" name="ekinflux_lat"       long_name="Time-averaged kinetic energy flux, meridional"   unit="J/m/s"/>
335
336      <field field_ref="enthalpy_t" name="enthalpy_t"                   long_name="Time-averaged enthalpy"   unit="J/m2"/>
337      <field field_ref="enthalpyflux_lon" name="enthalpyflux_lon"       long_name="Time-averaged enthalpy flux, zonal"   unit="J/m/s"/>
338      <field field_ref="enthalpyflux_lat" name="enthalpyflux_lat"       long_name="Time-averaged enthalpy flux, meridional"   unit="J/m/s"/>
339
340    </field_group>
341
342    <variable name="model" type="string" > dynamico </variable>
343    <variable name="test_case" type="string" > $EXPNAME </variable>
344    <variable name="horizontal_resolution" type="string" > native (grid points : 80x80x10) </variable>
345    <variable name="levels" type="string" > L10 </variable>
346    <variable name="grid" type="string" > hex </variable>
347    <variable name="equation" type="string" > hydro </variable>
348    <variable name="time_frequency" type="string" > $OUTPUT_FREQ </variable>   
349
350  </file>
351
352
353  <file id="output_dcmip2016_regular" enabled="true" output_freq="$OUTPUT_FREQ" sync_freq="$OUTPUT_FREQ" output_level="10" description="$EXPNAME" timeseries="none" >
354   
355    <field_group group_ref="dcmip2016_output_field_once"/>
356
357    <field_group group_ref="init_fields" domain_ref="regular_$OUTPUT_GRID" />
358   
359    <field_group group_ref="dcmip2016_output_field" domain_ref="regular_$OUTPUT_GRID" />
360
361    <field_group id="transport" ts_enabled="true" grid_ref="grid_q_regular" >
362          <field field_ref="q" name="q"  />
363          <field field_ref="qmass_t" name="qmass_t"  long_name="Time-averaged tracer mass"   unit="kg/m2"/>
364          <field field_ref="qflux_lon" name="qflux_lon"  long_name="Time-averaged tracer mass flux, zonal"   unit="kg/m/s"/>
365          <field field_ref="qflux_lat" name="qflux_lat"  long_name="Time-averaged tracer mass flux, meridional"   unit="kg/m/s"/>
366    </field_group>
367
368    <variable name="model" type="string" > dynamico </variable>
369    <variable name="test_case" type="string" > $EXPNAME </variable>
370    <variable name="horizontal_resolution" type="string" > $OUTPUT_GRID interpolated (grid points : $NBP x $NBP x $LLM) </variable>
371    <variable name="levels" type="string" > L30 </variable>
372    <variable name="grid" type="string" > hex </variable>
373    <variable name="equation" type="string" > hydro </variable>
374    <variable name="time_frequency" type="string" > $OUTPUT_FREQ </variable>   
375
376  </file>
377
378
379</file_definition>
380EOF
381}
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