Changeset 621

Timestamp:

11/25/17 17:23:07 (6 years ago)

Author:

dubos

Message:

devel/unstructured : mesh partitioning

File:

• codes/icosagcm/devel/make_python (modified) (2 diffs)

codes/icosagcm/devel/make_python

@@ -45 +45 @@
     ARLIB=$1
     SOLIB=$2
-    ls -l $ARLIB
-    ls -l $SOLIB
+
     if [[ $ARLIB -nt $SOLIB ]]; then
         echo $ARLIB is newer than $SOLIB
-        log $LINK $SOFLAGS $WHOLE_ARCHIVE $ARLIB $NO_WHOLE_ARCHIVE $3 -o $SOLIB
+        rm -f tmp.a
+        cp $ARLIB tmp.a
+        ar vd tmp.a $4
+        ar vr tmp.a $5
+        log $LINK $SOFLAGS $WHOLE_ARCHIVE tmp.a $NO_WHOLE_ARCHIVE $3 -o $SOLIB
+        rm -f tmp.a
         $LDD $SOLIB
     fi
@@ -57 +61 @@
 function cmd_()
 {
+    MISSING=""
+    for module in netCDF4 jinja2 mpi4py; do
+        echo "import $module"
+        python -c "import $module" || MISSING="$MISSING $module"
+    done
+    if [[ "$MISSING" == "" ]] ; then
+        echo "All required Python modules seem present."
+    else
+        echo "Missing/dysfunctional python modules : $MISSING"
+        echo "Please fix your Python configuration"
+        exit
+    fi
+
+    log mpicc -c -std=c99 -fPIC $PARMETIS_CFLAGS Python/src/partition.c -o obj/partition.o
     make_so $XIOS_ROOTDIR/lib/libxios.a $LIBDIR/libxios.so "$NETCDF_LDFLAGS"
-    make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios"
+    make_so $LIBDIR/libicosa.a $LIBDIR/libicosa.so "-L$LIBDIR -lxios $KERNELS_LDFLAGS" "physics_external_mod.o physics_mod.o timeloop_gcm_mod.o icosa_init_mod.o" obj/partition.o
 
     # Cythonize Python modules
     cd $DYNAMICO_ROOT/Python/src
-    CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR -licosa"
+    CYTHONFLAGS="$SOFLAGS $LDFLAGS -L$LIBDIR -licosa $KERNELS_LDFLAGS"
     LDSHARED="$LINK" CFLAGS="-fno-strict-aliasing -O2" LDFLAGS="$CYTHONFLAGS" log python setup.py build_ext --inplace
-    cp -fp *.so $DYNAMICO_ROOT/Python/dynamico
-    cd ..
-#    python -c 'import dynamico ; help(dynamico)'
+    cp -fpr $DYNAMICO_ROOT/Python/dynamico $DYNAMICO_ROOT/lib
+    cp -fp *.so $DYNAMICO_ROOT/lib/dynamico/
+    cd $DYNAMICO_ROOT
+
+    for module in DCMIP time_step dyn xios unstructured; do
+        echo "from dynamico import $module"
+        python -c "from dynamico import $module"
+    done
 }