# # ChangeLog for codes/icosagcm/devel # # Generated by Trac 1.0.1 # 06/27/24 18:19:11 Thu, 02 May 2019 10:19:02 GMT dubos [831] * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/compute_theta.F90 (added) devel : separate module for compute_theta Thu, 02 May 2019 07:44:14 GMT dubos [830] * codes/icosagcm/devel/rebuild_full (added) * codes/icosagcm/devel/src/base/grid_param.f90 (modified) * codes/icosagcm/devel/src/base/init_grid_param.f90 (added) * codes/icosagcm/devel/src/icosa_init.f90 (modified) * codes/icosagcm/devel/src/unstructured/init_unstructured.f90 (modified) devel : merged init_grid_param and init_grid_type Wed, 01 May 2019 21:44:24 GMT dubos [829] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) devel/Python : temporary fix to meshes.py Wed, 01 May 2019 21:34:33 GMT dubos [828] * codes/icosagcm/devel/Python/env/X64_IRENE.env (modified) * codes/icosagcm/devel/make_icosa (modified) devel: fix build on IRENE Wed, 01 May 2019 13:13:35 GMT dubos [827] * codes/icosagcm/devel/src/dynamics/caldyn_gcm.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (modified) * codes/icosagcm/devel/src/dynamics/compute.f90 (added) * codes/icosagcm/devel/src/dynamics/compute_pvort_only.F90 (added) devel : towards Fortran driver for unstructured/LAM meshes Tue, 30 Apr 2019 16:15:39 GMT dubos [826] * codes/icosagcm/devel/make_python (modified) devel/Python : moved Fortran bindings and *.pyx to dynamico/dev module + ... Tue, 30 Apr 2019 16:14:37 GMT dubos [825] * codes/icosagcm/devel/Python/dynamico/__init__.py (modified) * codes/icosagcm/devel/Python/dynamico/dev/__init__.py (modified) * codes/icosagcm/devel/Python/dynamico/dev/libs.py (moved) * codes/icosagcm/devel/Python/dynamico/dev/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/dev/parallel.py (added) * codes/icosagcm/devel/Python/dynamico/dev/precision.py (moved) * codes/icosagcm/devel/Python/dynamico/dev/wrap.py (moved) * codes/icosagcm/devel/Python/dynamico/dev/xios.py (moved) * codes/icosagcm/devel/Python/dynamico/kernels.py (modified) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/parallel.py (modified) * codes/icosagcm/devel/Python/dynamico/util.py (modified) * codes/icosagcm/devel/Python/src/cxios.pyx (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) * codes/icosagcm/devel/Python/test/py/dump_partition.py (modified) * codes/icosagcm/devel/Python/test/py/partition.py (modified) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (modified) * codes/icosagcm/devel/Python/test/python.sh (modified) devel/Python : moved Fortran bindings and *.pyx to dynamico/dev module + ... Tue, 30 Apr 2019 14:59:07 GMT dubos [824] * codes/icosagcm/devel/src/dcmip/dcmip2016_kessler_physic.f90 (modified) * codes/icosagcm/devel/src/diagnostics/check_conserve.f90 (modified) devel : fix errors caught by F_Front Tue, 30 Apr 2019 14:34:41 GMT dubos [823] * codes/icosagcm/devel/XCodeML (added) * codes/icosagcm/devel/XCodeML/external_src (added) * codes/icosagcm/devel/XCodeML/external_src/iso_c_binding.f90 (added) * codes/icosagcm/devel/XCodeML/external_src/iso_fortran_env.f90 (added) * codes/icosagcm/devel/XCodeML/external_src/omp_lib.f90 (added) * codes/icosagcm/devel/XCodeML/external_src/xios.f90 (added) * codes/icosagcm/devel/XCodeML/make_xml.sh (added) * codes/icosagcm/devel/XCodeML/netcdf-fortran-4.4.5.tar.gz (added) * codes/icosagcm/devel/XCodeML/parse_order.txt (added) * codes/icosagcm/devel/XCodeML/xml (added) * codes/icosagcm/devel/XCodeML/xmod (added) devel : script and files to parse DYNAMICO using XCodeML F_Front Sun, 14 Apr 2019 22:42:42 GMT dubos [822] * codes/icosagcm/devel/src/kernels_unst/compute_NH_geopot.k90 (modified) devel : fix syntax of some WRITE statements (tolerated by ifort) Sun, 14 Apr 2019 22:31:19 GMT dubos [821] * codes/icosagcm/devel/Python/src/kernels_caldyn_NH.jin (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/kernels_hex/compute_NH_geopot.k90 (modified) * codes/icosagcm/devel/src/parallel/domain.f90 (modified) devel : fix syntax of some WRITE statements (tolerated by ifort) Tue, 02 Apr 2019 16:10:35 GMT jisesh [820] * codes/icosagcm/devel/src/dissip/guided_mod.f90 (modified) * codes/icosagcm/devel/src/dissip/nudging_mod.f90 (modified) * codes/icosagcm/devel/src/time/timeloop_gcm.f90 (modified) devel : towards nudging (status : relax wind + theta towards initial ... Mon, 25 Mar 2019 16:19:44 GMT jisesh [818] * codes/icosagcm/devel/src/dissip/guided_mod.f90 (modified) * codes/icosagcm/devel/src/dissip/nudging_mod.f90 (added) * codes/icosagcm/devel/src/time/timeloop_gcm.f90 (modified) devel : towards nudging (now : wind only) Wed, 13 Mar 2019 15:02:44 GMT jisesh [813] * codes/icosagcm/devel/src/base/grid_param.f90 (modified) * codes/icosagcm/devel/src/icosa_init.f90 (modified) * codes/icosagcm/devel/src/parallel/domain.f90 (modified) * codes/icosagcm/devel/src/parallel/mpipara.F90 (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/init_unstructured.f90 (added) devel ; towards Fortran driver for unstructured/LAM meshes Wed, 13 Mar 2019 14:48:23 GMT jisesh [812] * codes/icosagcm/devel/Python/test/py/dump_partition.py (added) devel/Python : generate grid file to be read by unstructured Fortran ... Fri, 22 Feb 2019 17:09:12 GMT adurocher [811] * codes/icosagcm/devel/src/sphere/vector.f90 (modified) * codes/icosagcm/trunk/src/sphere/vector.f90 (modified) trunk+devel : fixed cross product Sat, 09 Feb 2019 17:49:40 GMT dubos [809] * codes/icosagcm/devel/arch/arch-X64_IRENE.env (modified) * codes/icosagcm/devel/arch/arch-X64_IRENE.path (modified) devel : fix arch files on IRENE Fri, 08 Feb 2019 17:53:34 GMT jisesh [807] * codes/icosagcm/devel/Python/dynamico/LAM.py (modified) * codes/icosagcm/devel/Python/dynamico/dev/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/maps.py (modified) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (modified) devel/Python : polar projection + Williamson test case 2 on LAM Fri, 08 Feb 2019 17:51:47 GMT jisesh [806] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel/Python/Baroclinic_3D_ullrich : output Phi at half-levels Fri, 08 Feb 2019 07:10:04 GMT dubos [805] * codes/icosagcm/devel/Python/dynamico/dev/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/dev/numba.py (modified) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/Godunov.py (modified) * codes/icosagcm/devel/Python/test/py/NH_3D_bubble.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) devel/Python : moving Fortran-based features to dynamico.dev module ... Thu, 07 Feb 2019 11:27:38 GMT dubos [804] * codes/icosagcm/devel/Python/dynamico/dev (added) * codes/icosagcm/devel/Python/dynamico/dev/__init__.py (added) * codes/icosagcm/devel/Python/dynamico/dev/meshes.py (added) * codes/icosagcm/devel/Python/dynamico/dev/numba.py (added) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/util.py (modified) * codes/icosagcm/devel/Python/test/fig_Godunov (added) * codes/icosagcm/devel/Python/test/py/Godunov.py (added) * codes/icosagcm/devel/Python/test/python.sh (modified) devel/Python : introduced Python/dynamico/dev/ subdirectory Mon, 21 Jan 2019 10:34:04 GMT dubos [802] * codes/icosagcm/devel/Python/dynamico/getargs.py (modified) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/parallel.py (modified) * codes/icosagcm/devel/Python/dynamico/time_step.py (modified) * codes/icosagcm/devel/Python/dynamico/wrap.py (modified) * codes/icosagcm/devel/Python/dynamico/xios.py (modified) * codes/icosagcm/devel/Python/src/cxios.pyx (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/timestep_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/transfer_unstructured.F90 (modified) devel/unstructured : reduced, configurable log output Thu, 17 Jan 2019 09:42:38 GMT dubos [801] * codes/icosagcm/devel/Python/dynamico/maps.py (modified) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) devel/unstructured : implement reference vs physical mesh for spherical ... Wed, 16 Jan 2019 14:27:39 GMT jisesh [800] * codes/icosagcm/devel/Python/dynamico/maps.py (added) * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/unstructured : introduced mapping from reference domain to ... Mon, 14 Jan 2019 09:54:58 GMT dubos [799] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) devel/Python : shift positions in Cartesian meshes by dx/2, dy/2 Thu, 10 Jan 2019 16:48:18 GMT jisesh [798] * codes/icosagcm/devel/Python/test/fig_RSW_2D_mesh (modified) * codes/icosagcm/devel/Python/test/py (modified) Python/test : ignore *.png and *.bak files Thu, 10 Jan 2019 16:37:58 GMT jisesh [797] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) unstructured/Python : command-line arg for ztop in ... Thu, 10 Jan 2019 16:35:05 GMT jisesh [796] * codes/icosagcm/devel/src/kernels_unst/wind_centered.k90 (added) * codes/icosagcm/devel/src/unstructured/caldyn_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/diags_unstructured.F90 (added) * codes/icosagcm/devel/src/unstructured/unstructured.h90 (modified) unstructured : reconstruction of velocity components (bugged) Wed, 09 Jan 2019 15:26:50 GMT jisesh [795] * codes/icosagcm/devel/Python/dynamico/getargs.py (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/python.sh (modified) * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) unstructured/Python : bugfix logging + more diagnostics Thu, 13 Dec 2018 17:01:37 GMT jisesh [794] * codes/icosagcm/devel/Python/dynamico/LAM.py (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/unstructured : moved Davies relaxation zone outside physical ... Mon, 10 Dec 2018 11:48:58 GMT jisesh [792] * codes/icosagcm/devel/Python/src/kernels_transport.jin (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/src/kernels_unst/curl_laplacian.k90 (added) * codes/icosagcm/devel/src/unstructured/caldyn_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/timestep_unstructured.F90 (modified) devel/unstructured : added kernel for curl curl ; used by ... Wed, 05 Dec 2018 10:59:29 GMT dubos [791] * codes/icosagcm/devel/Python/dynamico/LAM.py (added) * codes/icosagcm/devel/Python/dynamico/kernels.py (added) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : moved kernels (grad ...) and Davies relaxation as modules Mon, 03 Dec 2018 16:58:11 GMT dubos [790] * codes/icosagcm/devel/Python/dynamico/getargs.py (added) * codes/icosagcm/devel/Python/dynamico/wrap.py (modified) * codes/icosagcm/devel/Python/dynamico/xios.py (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/py/test_halo.py (added) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (modified) * codes/icosagcm/devel/Python/test/python.sh (modified) devel/Python : centralize logging and command-line argument parsing + ... Mon, 03 Dec 2018 15:28:12 GMT dubos [789] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) devel/Python : bugfix in Cartesian mesh generation Fri, 23 Nov 2018 12:06:47 GMT dubos [787] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/xios.py (modified) * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/xml/context_icosa_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel/Python : XIOS output on dual mesh Fri, 23 Nov 2018 12:04:41 GMT dubos [786] * codes/icosagcm/devel/Python/test/py/RSW_2D.py (modified) devel/Python : cosmetic fix in RSW_2D.py Wed, 21 Nov 2018 15:17:24 GMT jisesh [785] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel/Python : added bilaplacian dissipation for theta + diagnostic of ... Wed, 21 Nov 2018 15:16:06 GMT jisesh [784] * codes/icosagcm/devel/Python/src/kernels_transport.jin (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) * codes/icosagcm/devel/src/kernels_unst/scalar_laplacian.k90 (added) * codes/icosagcm/devel/src/unstructured/caldyn_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/timestep_unstructured.F90 (modified) devel/unstructured : laplacian operator Wed, 21 Nov 2018 15:10:59 GMT jisesh [783] * codes/icosagcm/devel/Python/dynamico/xios.py (modified) devel/unstructured : fix XIOS info for curvilinear meshes Wed, 21 Nov 2018 10:09:04 GMT jisesh [782] * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel/Python : Added more fields in filedef_simple.xml and ... Tue, 20 Nov 2018 11:44:31 GMT jisesh [780] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : writing z output and fixed issue with theta values in ... Fri, 16 Nov 2018 13:03:09 GMT dubos [779] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/reorder.py (modified) devel/unstructured : read dual_ne from mesh file when parallel Fri, 16 Nov 2018 12:44:49 GMT dubos [778] * codes/icosagcm/devel/Python/dynamico/time_step.py (modified) devel/Python : add Euler time step for debug Fri, 16 Nov 2018 12:20:22 GMT dubos [777] * codes/icosagcm/devel/Python/test/python.sh (modified) devel/Python : update dynamico modules at beginning of python.sh Fri, 16 Nov 2018 12:18:34 GMT dubos [776] * codes/icosagcm/devel/Python/test/py/NH_3D_bubble_parallel.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (modified) unstructured/test : fix inversion of xx,yy in RSW_2D_mesh and ... Fri, 16 Nov 2018 12:12:38 GMT dubos [775] * codes/icosagcm/devel/src/unstructured/timestep_unstructured.F90 (modified) devel/unstructured : fix missing OMP END DO Wed, 14 Nov 2018 15:54:54 GMT jisesh [774] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : Added wind perturbation and logging in ... Wed, 14 Nov 2018 14:07:09 GMT dubos [773] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (modified) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (modified) devel/Python : fix RSW_2D testcase Mon, 12 Nov 2018 01:04:46 GMT jisesh [772] * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel/Python : Added more fields in filedef_simple.xml and ... Thu, 08 Nov 2018 16:29:34 GMT jisesh [771] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : Implemented Davies relaxation in Baroclinic_3D_ullrich.py Mon, 05 Nov 2018 13:28:31 GMT dubos [770] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) devel/unstructured bugfix : indexing of Cartesian mesh Mon, 05 Nov 2018 10:51:07 GMT jisesh [769] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : Implemented time stepping Wed, 31 Oct 2018 13:22:54 GMT jisesh [768] * codes/icosagcm/devel/Python/test/py/NH_3D_bubble_parallel.py (modified) devel/Python : Parallel version of NH_3D_bubble with XIOS Mon, 22 Oct 2018 20:51:05 GMT jisesh [766] * codes/icosagcm/devel/Python/test/py/NH_3D_bubble_parallel.py (added) devel/Python : added parallel NH_3D_bubble Sun, 21 Oct 2018 11:39:10 GMT jisesh [765] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : removed debugging print statements Thu, 18 Oct 2018 14:19:17 GMT jisesh [764] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : Passing command line arguments Thu, 18 Oct 2018 13:13:21 GMT jisesh [763] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (modified) devel/Python : writing data in parallel Tue, 16 Oct 2018 13:56:57 GMT jisesh [762] * codes/icosagcm/devel/Python/test/fig_baroclinic_3D (added) * codes/icosagcm/devel/Python/test/xml/context_icosa_full.xml (modified) * codes/icosagcm/devel/Python/test/xml/field_def_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) devel : tests for Baroclinic instability 3D Tue, 16 Oct 2018 13:35:46 GMT jisesh [761] * codes/icosagcm/devel/Python/test/py/Baroclinic_3D_ullrich.py (added) Added code Baroclinic_3D_ullrich.py Sun, 14 Oct 2018 23:04:44 GMT dubos [760] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/xios.py (modified) * codes/icosagcm/devel/Python/src/cxios.pyx (modified) * codes/icosagcm/devel/Python/test/py/DCMIP2008c5_MPI.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) * codes/icosagcm/devel/Python/test/py/partition.py (modified) * codes/icosagcm/devel/Python/test/py/test_xios.py (modified) * codes/icosagcm/devel/Python/test/py/test_xios_cartesian.py (modified) * codes/icosagcm/devel/Python/test/xml/iodef.xml (modified) devel/Python : block-wise partitioning Thu, 11 Oct 2018 16:27:15 GMT dubos [759] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/xios.py (modified) * codes/icosagcm/devel/Python/src (modified) * codes/icosagcm/devel/Python/src/cxios.pyx (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (modified) * codes/icosagcm/devel/Python/test/py/test_xios.py (modified) * codes/icosagcm/devel/Python/test/py/test_xios_cartesian.py (added) * codes/icosagcm/devel/Python/test/python.sh (modified) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/link.sh (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) devel/unstructured : towards XIOS output with curvilinear mesh Wed, 10 Oct 2018 16:12:01 GMT dubos [758] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (modified) devel/Python : added ncwrite to Cartesian_mesh + bugfixes + cleanup Wed, 10 Oct 2018 10:37:11 GMT dubos [757] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) devel/Python : added some features to Cartesian_Mesh Tue, 09 Oct 2018 12:28:53 GMT dubos [756] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (modified) devel/Python : moved DYNAMICO_Format to meshes.py + cleanup Tue, 09 Oct 2018 08:44:10 GMT dubos [755] * codes/icosagcm/devel/Python/test/xml/context_icosa_full.xml (moved) * codes/icosagcm/devel/Python/test/xml/filedef_full.xml (moved) * codes/icosagcm/devel/Python/test/xml/filedef_simple.xml (modified) * codes/icosagcm/devel/Python/test/xml/iodef.xml (modified) * codes/icosagcm/devel/Python/test/xml/link.sh (added) devel/Python : simplify management of XML files for test cases Mon, 08 Oct 2018 16:57:20 GMT dubos [754] * codes/icosagcm/devel/Python/test/py/RSW_2D.py (modified) devel/unstructured : fix RSW_2D test case for mixed precision Mon, 08 Oct 2018 16:46:28 GMT dubos [753] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/NH_3D_bubble.py (modified) devel/unstructured : fixed indexing bug in Cartesian mesh Mon, 08 Oct 2018 14:13:17 GMT jisesh [752] * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh_V2.py (deleted) Deleting file 'write_Cartesian_mesh_V2.py' Mon, 08 Oct 2018 14:01:07 GMT jisesh [751] * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (added) devel: write Cartesian mesh to NetCDF file Mon, 08 Oct 2018 13:53:41 GMT jisesh [750] * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (added) commit message Mon, 08 Oct 2018 08:49:07 GMT dubos [749] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/test/py/RSW2_MPAS_W02.py (modified) * codes/icosagcm/devel/src/unstructured/caldyn_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) devel/unstructured : fix recently introduced bugs Fri, 05 Oct 2018 16:15:35 GMT jisesh [748] * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh_V2.py (added) Added write_Cartesian_mesh_V2.py. Fri, 05 Oct 2018 11:42:49 GMT dubos [747] * codes/icosagcm/devel/Python/dynamico/meshes.py (modified) * codes/icosagcm/devel/Python/dynamico/precision.py (added) * codes/icosagcm/devel/Python/dynamico/time_step.py (modified) * codes/icosagcm/devel/Python/dynamico/wrap.py (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) * codes/icosagcm/devel/Python/test/py/DCMIP2008c5.py (modified) * codes/icosagcm/devel/Python/test/py/NH_3D_bubble.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (modified) * codes/icosagcm/devel/Python/test/py/RSW_MPAS_W02.py (modified) * codes/icosagcm/devel/Python/test/py/bubble.py (modified) * codes/icosagcm/devel/Python/test/py/slice_GW_NH.py (modified) * codes/icosagcm/devel/Python/test/py/slice_GW_hydro.py (modified) * codes/icosagcm/devel/make_icosa (modified) * codes/icosagcm/devel/make_python (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) devel/unstructured : more fixes to mixed precision Thu, 04 Oct 2018 23:10:39 GMT dubos [746] * codes/icosagcm/devel/Python/src/functions.h (modified) * codes/icosagcm/devel/Python/src/unstructured.pyx (modified) devel : make_icosa option for mixed precision (completes r744) Wed, 03 Oct 2018 21:12:28 GMT dubos [745] * codes/icosagcm/devel/src/sphere/vector.f90 (modified) devel : fix accuracy issue with cross_product2 => -xHost now conserves ... Wed, 03 Oct 2018 15:58:55 GMT dubos [744] * codes/icosagcm/devel/Python/src/setup.py (modified) * codes/icosagcm/devel/make_icosa (modified) * codes/icosagcm/devel/src/unstructured/data_unstructured.F90 (modified) * codes/icosagcm/devel/src/unstructured/unstructured.h90 (modified) devel : make_icosa option for mixed precision Wed, 03 Oct 2018 14:52:02 GMT dubos [743] * codes/icosagcm/devel/make_icosa (modified) devel : fixed bug recently introduced in make_icosa Fri, 28 Sep 2018 10:59:46 GMT dubos [741] * codes/icosagcm/devel/src/initial/etat0_venus.f90 (modified) * codes/icosagcm/devel/src/physics/physics.f90 (modified) * codes/icosagcm/devel/src/physics/physics_interface.f90 (modified) * codes/icosagcm/devel/src/time/timeloop_gcm.f90 (modified) devel : added vertical diffusion to idealized venus physics Thu, 20 Sep 2018 23:44:51 GMT dubos [739] * codes/icosagcm/devel/src/dcmip/physics_dcmip2016.f90 (modified) * codes/icosagcm/devel/src/physics/physics.f90 (modified) * codes/icosagcm/devel/src/physics/physics_interface.f90 (modified) devel : small cleanup in idealized physics Thu, 20 Sep 2018 22:59:11 GMT dubos [738] * codes/icosagcm/devel/arch/arch-X64_IRENE.fcm (modified) * codes/icosagcm/devel/arch/arch-X64_IRENE.opt (added) * codes/icosagcm/devel/bld.cfg (modified) * codes/icosagcm/devel/make_icosa (modified) devel/IRENE : use AVX512 in dynamics and AVX elsewhere ; fixes mass ... Thu, 20 Sep 2018 17:54:05 GMT dubos [737] * codes/icosagcm/devel/src/time/time.f90 (modified) devel : fix itau_dissip (missed when backporting r706) Wed, 19 Sep 2018 22:01:14 GMT dubos [736] * codes/icosagcm/devel/arch/arch-X64_IRENE.env (modified) devel : update IRENE arch after system upgrade Mon, 27 Aug 2018 16:35:24 GMT dubos [735] * codes/icosagcm/devel/src/dynamics/caldyn_gcm.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (modified) devel : Gassmann (2018) modification of TRiSK Coriolis discretization Mon, 27 Aug 2018 11:51:26 GMT dubos [734] * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (modified) devel : consistent discretization of kinetic energy Fri, 24 Aug 2018 12:23:25 GMT dubos [733] * codes/icosagcm/devel/src/dynamics/caldyn_gcm.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (modified) devel : towards consistent discretization of kinetic energy Fri, 24 Aug 2018 11:56:09 GMT dubos [732] * codes/icosagcm/devel/src/base/earth_const.f90 (modified) * codes/icosagcm/devel/src/dcmip/physics_dcmip2016.f90 (modified) * codes/icosagcm/devel/src/diagnostics/diagflux.F90 (modified) * codes/icosagcm/devel/src/diagnostics/observable.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (modified) * codes/icosagcm/devel/src/initial/etat0.f90 (modified) * codes/icosagcm/devel/src/initial/etat0_dcmip2016_baroclinic_wave.f90 (modified) * codes/icosagcm/devel/src/initial/etat0_dcmip2016_cyclone.f90 (modified) * codes/icosagcm/devel/src/initial/etat0_dcmip2016_supercell.f90 (modified) * codes/icosagcm/devel/src/output/write_etat0.f90 (modified) * codes/icosagcm/devel/src/time/hevi_scheme.f90 (modified) * codes/icosagcm/devel/src/time/timeloop_gcm.f90 (modified) devel : more cleanup and reorganization in dynamics/ Fri, 24 Aug 2018 10:56:07 GMT dubos [731] * codes/icosagcm/devel/src/dynamics/caldyn_gcm.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_hevi.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels.f90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_base.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_kernels_hevi.F90 (modified) * codes/icosagcm/devel/src/dynamics/caldyn_vars.f90 (added) devel : cleanup and reorganization in dynamics/ Fri, 24 Aug 2018 10:11:02 GMT dubos [730] * codes/icosagcm/devel/make_icosa (modified) devel : improve make_icosa to avoid unnecessary re-compilation Thu, 23 Aug 2018 15:38:00 GMT dubos [728] * codes/icosagcm/devel/src/diagnostics/kinetic.f90 (modified) * codes/icosagcm/devel/src/diagnostics/observable.f90 (modified) devel : diagnose consistent kinetic energy using new req_z1_scal (r711) Wed, 22 Aug 2018 15:28:01 GMT dubos [726] * codes/icosagcm/devel/src/icosa_init.f90 (modified) * codes/icosagcm/devel/src/initial/etat0_database.f90 (modified) * codes/icosagcm/devel/src/output/xios_mod.F90 (modified) * codes/icosagcm/devel/src/parallel/domain.f90 (modified) * codes/icosagcm/devel/src/parallel/mpipara.F90 (modified) * codes/icosagcm/devel/src/parallel/transfert.F90 (modified) * codes/icosagcm/devel/src/parallel/transfert_mpi.f90 (modified) * codes/icosagcm/devel/src/physics/physics.f90 (modified) * codes/icosagcm/devel/src/sphere/metric.f90 (modified) devel : backported from trunk commits r707-r711,r713 Thu, 09 Aug 2018 11:55:51 GMT dubos [724] * codes/icosagcm/devel/src/kernels_hex/caldyn_wflux.k90 (modified) * codes/icosagcm/devel/src/kernels_hex/compute_NH_geopot.k90 (modified) * codes/icosagcm/devel/src/kernels_hex/compute_geopot.k90 (modified) * codes/icosagcm/devel/src/kernels_hex/energy_fluxes.k90 (modified) devel : updated generated kernels ; added missing SIMD directives Thu, 09 Aug 2018 11:32:43 GMT dubos [723] * codes/icosagcm/devel/Python/src/hexagonal/macros.jin (modified) devel : created serial kernels to debug OpenMP (bugfix) Thu, 09 Aug 2018 11:28:53 GMT dubos [722] * codes/icosagcm/devel/src/dynamics/caldyn_kernels_base.F90 (modified) devel : OpenMP bugfix - tested with DCMIP31 NH Wed, 08 Aug 2018 17:37:11 GMT dubos [721] * codes/icosagcm/devel/Python/src/hex_master (added) * codes/icosagcm/devel/Python/src/hex_master/macros.jin (added) * codes/icosagcm/devel/Python/src/hexagonal/macros.jin (modified) * codes/icosagcm/devel/make_python (modified) * codes/icosagcm/devel/src/kernels_hex_master (added) devel : created serial kernels to debug OpenMP Wed, 08 Aug 2018 14:53:52 GMT dubos [720] * codes/icosagcm/devel/Python/env/ifort_CICLAD.env (modified) devel : fix CICLAD build Wed, 08 Aug 2018 14:27:31 GMT dubos [719] * codes/icosagcm/devel/Python/test/fig_RSW_2D_mesh (added) * codes/icosagcm/devel/Python/test/py/RSW_2D_mesh.py (added) * codes/icosagcm/devel/Python/test/py/write_Cartesian_mesh.py (added) devel/unstructured : write/read Cartesian mesh as an unstructured mesh Wed, 08 Aug 2018 11:48:26 GMT dubos [718] * codes/icosagcm/devel/Python/env/ifort_CICLAD.env (modified) * codes/icosagcm/devel/arch/arch-ifort_CICLAD.fcm (modified) * codes/icosagcm/devel/arch/arch-ifort_CICLAD.path (modified) devel : fix CICLAD build Wed, 08 Aug 2018 11:45:55 GMT dubos [717] * codes/icosagcm/devel/Python/test/python.sh (modified) devel/unstructured : more flexible wrapper to execute test cases Tue, 07 Aug 2018 15:34:49 GMT dubos [715] * codes/icosagcm/devel/src/icosa_mod.f90 (modified) devel : OpenMP fix for disvert=ncar Fri, 03 Aug 2018 14:53:37 GMT dubos [714] * codes/icosagcm/devel/src/base/earth_const.f90 (modified) * codes/icosagcm/devel/src/base/profiling.f90 (added) * codes/icosagcm/devel/src/diagnostics/check_conserve.f90 (modified) * codes/icosagcm/devel/src/diagnostics/observable.f90 (modified) * codes/icosagcm/devel/src/diagnostics/wind.F90 (modified) * codes/icosagcm/devel/src/dissip/dissip_gcm.f90 (modified) * codes/icosagcm/devel/src/icosa_init.f90 (modified) * codes/icosagcm/devel/src/output/output_field.f90 (modified) * codes/icosagcm/devel/src/parallel/mpipara.F90 (modified) * codes/icosagcm/devel/src/parallel/transfert_mpi.f90 (modified) * codes/icosagcm/devel/src/physics/physics.f90 (modified) * codes/icosagcm/devel/src/time/timeloop_gcm.f90 (modified) devel : backported from trunk commits r607,r648,r649,r667,r668,r669,r706