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source: geisa/web/initGeisa_script.jsp @ 553

Last change on this file since 553 was 553, checked in by npipsl, 12 years ago
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File size: 96.9 KB

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1	<%@ page import="com.ether.Controller" %>
2	<%@ page import="com.ether.IsotopeG03" %>
3	<%@ page import="com.ether.IsotopeIasiG03" %>
4	<%@ page import="com.ether.IsotopeG09" %>
5	<%@ page import="com.ether.IsotopeIasiG09" %>
6
7	<script type="text/javascript">
8
9
10
11	//permet de deselectionner la molecule quand on deselectionne un isotope (toutes les options sauf lst)
12	/*function decliquemol( name )
13	{
14
15	var inputs = document.getElementsByTagName( 'input' );
16	var count = inputs.length;
17	for( i = 0; i < count; i++ )
18	{
19	input = inputs.item( i );
20	if( input.type == 'checkbox' && input.id == (name + '-all') && input.checked == true )
21	{
22	input.checked = false;
23	}
24	}
25	} */
26
27
28	var InterfaceInit = Class.create( {
29
30	initialize: function()
31	{
32	/ ******* CONTAINERS ******* /
33	this.containerFormSpectralRangeLower = $( "#spectralRangeLower" );
34	this.containerFormSpectralRangeUpper = $( "#spectralRangeUpper" );
35	this.containerFormIntensityLower = $( "#intensityLower" );
36	this.containerFormIntensityUpper = $( "#intensityUpper" );
37	this.containerFormMeanValue1 = $( "#meanValue1" );
38	this.containerDownload = $( "#downloadContainer" );
39	this.containerLoading = $( "#loading" );
40	/ ******* VARIABLE ******* /
41	<%--this.pathImg = <%=Controller.PATH_IMAGES%>;--%>
42
43	this.initializeMolecules();
44	this.createForm();
45
46	var downloadButton = new Button( {value:"Download", parent:$( "#downloadContainer" ), id:"button_submit_2", className: "red_button", classNameText:"red_button_text", onClick:jQuery.proxy( this.onClickDownload, this )} );
47	},
48
49	initializeMolecules: function()
50	{
51	this.arrayGeisa2011 = new Array();
52	this.arrayGeisa2003 = new Array();
53	this.arrayGeisaIasi2011 = new Array();
54	this.arrayGeisaIasi2003 = new Array();
55
56	var molecule = new Object();
57	molecule.id="h2o";
58	molecule.name="H<sub>2</sub>O";
59	molecule.isotopesArray = ["161", "162", "171", "181", "182", "172"];
60	this.arrayGeisa2011.push(molecule);
61	this.arrayGeisa2003.push(molecule);
62	this.arrayGeisaIasi2011.push(molecule);
63	this.arrayGeisaIasi2003.push(molecule);
64
65	var molecule = new Object();
66	molecule.id="co2";
67	molecule.name="CO<sub>2</sub>";
68	molecule.isotopesArray = ["626", "627", "628", "636", "637", "638", "728", "828", "838"];
69	this.arrayGeisa2003.push(molecule);
70	this.arrayGeisa2011.push(molecule);
71	this.arrayGeisaIasi2011.push(molecule);
72	this.arrayGeisaIasi2003.push(molecule);
73
74	var molecule = new Object();
75	molecule.id="o3";
76	molecule.name="O<sub>3</sub>";
77	molecule.isotopesArray = ["666", "668", "686", "667", "676"];
78	this.arrayGeisa2003.push(molecule);
79	this.arrayGeisa2011.push(molecule);
80	this.arrayGeisaIasi2011.push(molecule);
81	this.arrayGeisaIasi2003.push(molecule);
82
83	var molecule = new Object();
84	molecule.id="n2o";
85	molecule.name="N<sub>2</sub>O";
86	molecule.isotopesArray = ["446", "447", "448", "456","458", "546", "548", "556"];
87	this.arrayGeisa2011.push(molecule);
88	this.arrayGeisaIasi2011.push(molecule);
89
90	var molecule = new Object();
91	molecule.id="n2o";
92	molecule.name="N<sub>2</sub>O";
93	molecule.isotopesArray = ["446", "447", "448", "456", "546"];
94	this.arrayGeisa2003.push(molecule);
95	this.arrayGeisaIasi2003.push(molecule);
96
97	var molecule = new Object();
98	molecule.id="co";
99	molecule.name="CO";
100	molecule.isotopesArray = ["26", "36", "28", "27", "38", "37"];
101	this.arrayGeisa2011.push(molecule);
102	this.arrayGeisa2003.push(molecule);
103	this.arrayGeisaIasi2011.push(molecule);
104	this.arrayGeisaIasi2003.push(molecule);
105
106	var molecule = new Object();
107	molecule.id="ch4";
108	molecule.name="CH<sub>4</sub>";
109	molecule.isotopesArray = ["211", "311"];
110	this.arrayGeisa2011.push(molecule);
111	this.arrayGeisa2003.push(molecule);
112
113	var molecule = new Object();
114	molecule.id="ch4";
115	molecule.name="CH<sub>4</sub>";
116	molecule.isotopesArray = ["211", "311", "212", "312"];
117	this.arrayGeisaIasi2011.push(molecule);
118
119	var molecule = new Object();
120	molecule.id="ch4";
121	molecule.name="CH<sub>4</sub>";
122	molecule.isotopesArray = ["211", "311", "212"];
123	this.arrayGeisaIasi2003.push(molecule);
124
125	var molecule = new Object();
126	molecule.id="o2";
127	molecule.name="O<sub>2</sub>";
128	molecule.isotopesArray = ["66", "67", "68"];
129	this.arrayGeisa2011.push(molecule);
130	this.arrayGeisa2003.push(molecule);
131
132	var molecule = new Object();
133	molecule.id="o2";
134	molecule.name="O<sub>2</sub>";
135	molecule.isotopesArray = ["66"];
136	this.arrayGeisaIasi2011.push(molecule);
137	this.arrayGeisaIasi2003.push(molecule);
138
139	var molecule = new Object();
140	molecule.id="no";
141	molecule.name="NO";
142	molecule.isotopesArray = ["46", "48", "56"];
143	this.arrayGeisa2011.push(molecule);
144	this.arrayGeisa2003.push(molecule);
145	this.arrayGeisaIasi2011.push(molecule);
146	this.arrayGeisaIasi2003.push(molecule);
147
148	var molecule = new Object();
149	molecule.id="so2";
150	molecule.name="SO<sub>2</sub>";
151	molecule.isotopesArray = ["626", "646"];
152	this.arrayGeisa2011.push(molecule);
153	this.arrayGeisa2003.push(molecule);
154	this.arrayGeisaIasi2011.push(molecule);
155	this.arrayGeisaIasi2003.push(molecule);
156
157	var molecule = new Object();
158	molecule.id="no2";
159	molecule.name="NO<sub>2</sub>";
160	molecule.isotopesArray = ["646"];
161	this.arrayGeisa2011.push(molecule);
162	this.arrayGeisa2003.push(molecule);
163	this.arrayGeisaIasi2011.push(molecule);
164	this.arrayGeisaIasi2003.push(molecule);
165
166	var molecule = new Object();
167	molecule.id="nh3";
168	molecule.name="NH<sub>3</sub>";
169	molecule.isotopesArray = ["411", "511" ];
170	this.arrayGeisa2011.push(molecule);
171	this.arrayGeisa2003.push(molecule);
172	this.arrayGeisaIasi2011.push(molecule);
173
174	var molecule = new Object();
175	molecule.id="ph3";
176	molecule.name="PH<sub>3</sub>";
177	molecule.isotopesArray = ["131" ];
178	this.arrayGeisa2011.push(molecule);
179	this.arrayGeisa2003.push(molecule);
180
181	var molecule = new Object();
182	molecule.id="hno3";
183	molecule.name="HNO<sub>3</sub>";
184	molecule.isotopesArray = ["146" ];
185	this.arrayGeisa2011.push(molecule);
186	this.arrayGeisa2003.push(molecule);
187	this.arrayGeisaIasi2011.push(molecule);
188	this.arrayGeisaIasi2003.push(molecule);
189
190	var molecule = new Object();
191	molecule.id="oh";
192	molecule.name="OH";
193	molecule.isotopesArray = ["61", "62", "81" ];
194	this.arrayGeisa2011.push(molecule);
195	this.arrayGeisa2003.push(molecule);
196
197	var molecule = new Object();
198	molecule.id="hf";
199	molecule.name="HF";
200	molecule.isotopesArray = ["19" ];
201	this.arrayGeisa2011.push(molecule);
202	this.arrayGeisa2003.push(molecule);
203
204	var molecule = new Object();
205	molecule.id="hcl";
206	molecule.name="HCL";
207	molecule.isotopesArray = ["15", "17" ];
208	this.arrayGeisa2011.push(molecule);
209	this.arrayGeisa2003.push(molecule);
210
211	var molecule = new Object();
212	molecule.id="hbr";
213	molecule.name="HBR";
214	molecule.isotopesArray = ["11", "19" ];
215	this.arrayGeisa2011.push(molecule);
216	this.arrayGeisa2003.push(molecule);
217
218	var molecule = new Object();
219	molecule.id="hi";
220	molecule.name="HI";
221	molecule.isotopesArray = ["17" ];
222	this.arrayGeisa2011.push(molecule);
223	this.arrayGeisa2003.push(molecule);
224
225	var molecule = new Object();
226	molecule.id="clo";
227	molecule.name="ClO";
228	molecule.isotopesArray = ["56", "76" ];
229	this.arrayGeisa2011.push(molecule);
230	this.arrayGeisa2003.push(molecule);
231
232	var molecule = new Object();
233	molecule.id="ocs";
234	molecule.name="OCS";
235	molecule.isotopesArray = ["622", "624", "632", "623", "822", "634"];
236	this.arrayGeisa2011.push(molecule);
237	this.arrayGeisa2003.push(molecule);
238	this.arrayGeisaIasi2011.push(molecule);
239	this.arrayGeisaIasi2003.push(molecule);
240
241	var molecule = new Object();
242	molecule.id="h2co";
243	molecule.name="H<sub>2</sub>CO";
244	molecule.isotopesArray = ["126", "128", "136"];
245	this.arrayGeisa2011.push(molecule);
246	this.arrayGeisa2003.push(molecule);
247
248	var molecule = new Object();
249	molecule.id="h2co";
250	molecule.name="H<sub>2</sub>CO";
251	molecule.isotopesArray = ["126"];
252	this.arrayGeisaIasi2011.push(molecule);
253
254	var molecule = new Object();
255	molecule.id="c2h6";
256	molecule.name="C<sub>2</sub>H<sub>6</sub>";
257	molecule.isotopesArray = ["226", "236"];
258	this.arrayGeisa2011.push(molecule);
259	this.arrayGeisa2003.push(molecule);
260
261	var molecule = new Object();
262	molecule.id="ch3d";
263	molecule.name="CH<sub>3</sub>D";
264	molecule.isotopesArray = ["212", "312"];
265	this.arrayGeisa2011.push(molecule);
266
267	var molecule = new Object();
268	molecule.id="ch3d";
269	molecule.name="CH<sub>3</sub>D";
270	molecule.isotopesArray = ["212"];
271	this.arrayGeisa2003.push(molecule);
272
273	var molecule = new Object();
274	molecule.id="c2h2";
275	molecule.name="C<sub>2</sub>H<sub>2</sub>";
276	molecule.isotopesArray = ["221", "231"];
277	this.arrayGeisa2011.push(molecule);
278	this.arrayGeisa2003.push(molecule);
279	this.arrayGeisaIasi2011.push(molecule);
280	this.arrayGeisaIasi2003.push(molecule);
281
282	var molecule = new Object();
283	molecule.id="c2h4";
284	molecule.name="C<sub>2</sub>H<sub>4</sub>";
285	molecule.isotopesArray = ["211", "311"];
286	this.arrayGeisa2011.push(molecule);
287	this.arrayGeisa2003.push(molecule);
288	this.arrayGeisaIasi2011.push(molecule);
289
290	var molecule = new Object();
291	molecule.id="geh4";
292	molecule.name="GeH<sub>4</sub>";
293	molecule.isotopesArray = ["411"];
294	this.arrayGeisa2011.push(molecule);
295	this.arrayGeisa2003.push(molecule);
296
297	var molecule = new Object();
298	molecule.id="hcn";
299	molecule.name="HCN";
300	molecule.isotopesArray = ["124", "125", "134", "224"];
301	this.arrayGeisa2011.push(molecule);
302	this.arrayGeisaIasi2011.push(molecule);
303
304	var molecule = new Object();
305	molecule.id="hcn";
306	molecule.name="HCN";
307	molecule.isotopesArray = ["124", "125", "134"];
308	this.arrayGeisa2003.push(molecule);
309
310	var molecule = new Object();
311	molecule.id="c3h8";
312	molecule.name="C<sub>3</sub>H<sub>8</sub>";
313	molecule.isotopesArray = ["221"];
314	this.arrayGeisa2011.push(molecule);
315	this.arrayGeisa2003.push(molecule);
316
317	var molecule = new Object();
318	molecule.id="c2n2";
319	molecule.name="C<sub>2</sub>N<sub>2</sub>";
320	molecule.isotopesArray = ["224"];
321	this.arrayGeisa2011.push(molecule);
322	this.arrayGeisa2003.push(molecule);
323
324	var molecule = new Object();
325	molecule.id="c4h2";
326	molecule.name="C<sub>4</sub>H<sub>2</sub>";
327	molecule.isotopesArray = ["211"];
328	this.arrayGeisa2011.push(molecule);
329	this.arrayGeisa2003.push(molecule);
330
331	var molecule = new Object();
332	molecule.id="hc3n";
333	molecule.name="HC<sub>3</sub>N";
334	molecule.isotopesArray = ["124"];
335	this.arrayGeisa2011.push(molecule);
336	this.arrayGeisa2003.push(molecule);
337
338	var molecule = new Object();
339	molecule.id="hocl";
340	molecule.name="HOCl";
341	molecule.isotopesArray = ["165", "167"];
342	this.arrayGeisa2011.push(molecule);
343	this.arrayGeisa2003.push(molecule);
344
345	var molecule = new Object();
346	molecule.id="n2";
347	molecule.name="N<sub>2</sub>";
348	molecule.isotopesArray = ["44"];
349	this.arrayGeisa2011.push(molecule);
350	this.arrayGeisa2003.push(molecule);
351	this.arrayGeisaIasi2011.push(molecule);
352	this.arrayGeisaIasi2003.push(molecule);
353
354	var molecule = new Object();
355	molecule.id="ch3cl";
356	molecule.name="CH<sub>3</sub>Cl";
357	molecule.isotopesArray = ["215", "217"];
358	this.arrayGeisa2011.push(molecule);
359	this.arrayGeisa2003.push(molecule);
360
361	var molecule = new Object();
362	molecule.id="h2o2";
363	molecule.name="H<sub>2</sub>O<sub>2</sub>";
364	molecule.isotopesArray = ["166"];
365	this.arrayGeisa2011.push(molecule);
366	this.arrayGeisa2003.push(molecule);
367
368	var molecule = new Object();
369	molecule.id="h2s";
370	molecule.name="H<sub>2</sub>S";
371	molecule.isotopesArray = ["121", "141", "131"];
372	this.arrayGeisa2011.push(molecule);
373	this.arrayGeisa2003.push(molecule);
374
375	var molecule = new Object();
376	molecule.id="hcooh";
377	molecule.name="HCOOH";
378	molecule.isotopesArray = ["261"];
379	this.arrayGeisa2011.push(molecule);
380	this.arrayGeisa2003.push(molecule);
381	this.arrayGeisaIasi2011.push(molecule);
382
383	var molecule = new Object();
384	molecule.id="cof2";
385	molecule.name="COF<sub>2</sub>";
386	molecule.isotopesArray = ["269"];
387	this.arrayGeisa2011.push(molecule);
388	this.arrayGeisa2003.push(molecule);
389
390	var molecule = new Object();
391	molecule.id="sf6";
392	molecule.name="SF<sub>6</sub>";
393	molecule.isotopesArray = ["29"];
394	this.arrayGeisa2011.push(molecule);
395	this.arrayGeisa2003.push(molecule);
396
397	var molecule = new Object();
398	molecule.id="c3h4";
399	molecule.name="C<sub>3</sub>H<sub>4</sub>";
400	molecule.isotopesArray = ["341"];
401	this.arrayGeisa2011.push(molecule);
402	this.arrayGeisa2003.push(molecule);
403
404	var molecule = new Object();
405	molecule.id="ho2";
406	molecule.name="HO<sub>2</sub>";
407	molecule.isotopesArray = ["166"];
408	this.arrayGeisa2011.push(molecule);
409	this.arrayGeisa2003.push(molecule);
410
411	var molecule = new Object();
412	molecule.id="clono2";
413	molecule.name="ClONO<sub>2</sub>";
414	molecule.isotopesArray = ["564", "764"];
415	this.arrayGeisa2011.push(molecule);
416	this.arrayGeisa2003.push(molecule);
417
418	var molecule = new Object();
419	molecule.id="ch3br";
420	molecule.name="CH<sub>3</sub>Br";
421	molecule.isotopesArray = ["79", "81"];
422	this.arrayGeisa2011.push(molecule);
423
424	var molecule = new Object();
425	molecule.id="ch3oh";
426	molecule.name="CH<sub>3</sub>OH";
427	molecule.isotopesArray = ["216"];
428	this.arrayGeisa2011.push(molecule);
429	this.arrayGeisaIasi2011.push(molecule);
430
431	var molecule = new Object();
432	molecule.id="noplus";
433	molecule.name="NO<sup>+</sup>";
434	molecule.isotopesArray = ["46"];
435	this.arrayGeisa2011.push(molecule);
436
437	var molecule = new Object();
438	molecule.id="hnc";
439	molecule.name="HNC";
440	molecule.isotopesArray = ["142"];
441	this.arrayGeisa2011.push(molecule);
442
443	var molecule = new Object();
444	molecule.id="c6h6";
445	molecule.name="C<sub>6</sub>H<sub>6</sub>";
446	molecule.isotopesArray = ["266"];
447	this.arrayGeisa2011.push(molecule);
448
449	var molecule = new Object();
450	molecule.id="c2hd";
451	molecule.name="C<sub>2</sub>HD";
452	molecule.isotopesArray = ["122"];
453	this.arrayGeisa2011.push(molecule);
454
455	var molecule = new Object();
456	molecule.id="cf4";
457	molecule.name="CF<sub>4</sub>";
458	molecule.isotopesArray = ["291"];
459	this.arrayGeisa2011.push(molecule);
460
461	var molecule = new Object();
462	molecule.id="ch3cn";
463	molecule.name="CH<sub>3</sub>CN";
464	molecule.isotopesArray = ["234"];
465	this.arrayGeisa2011.push(molecule);
466
467
468	},
469
470	// CREATES ********************************************************
471	createForm: function()
472	{
473	//Titre de la page
474	var titlePage = document.createTextNode("Graphic vizualisation of the GEISA database");
475	document.getElementById("titlePage").appendChild(titlePage);
476
477	//crÃ©ation de l'image d'attente
478	var param = new Object();
479	param.id = "loadingForGraphics";
480	param.parent = this.containerLoading;
481	this.loadingGraphics = new Loading( param );
482	// this.loadingGraphics.display();
483	//this.loadingGraphics.hide();
484
485
486	// Create menu deroulant choix de la base
487	var paramDatabase = new Object();
488	paramDatabase.id = "selectDatabase";
489	paramDatabase.parent = $("#database1");
490	this.selectDatabase = new Select( paramDatabase );
491	this.selectDatabase.add( 'GEISA2011', "GEISA 2011", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeG09.class%>' );
492	this.selectDatabase.add( 'GEISAIASI2011', "GEISA-IASI 2011", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeIasiG09.class%>' );
493	this.selectDatabase.add( 'GEISA2003', "GEISA 2003", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeG03.class%>' );
494	this.selectDatabase.add( 'GEISAIASI2003', "GEISA-IASI 2003", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeIasiG03.class%>' );
495	this.selectDatabase.selectFirst( false );
496
497	//Zone texte SpectralRange
498	//Titre gÃ©nÃ©ral (qui changera en fonction de la base geisa choisie)
499	document.getElementById('spectralRangeTitre').innerHTML = "";
500	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
501
502	//Titre
503	var titleSpectralRangeLower = document.createTextNode("Lower Bound :");
504	document.getElementById("spectralRangeLower").appendChild(titleSpectralRangeLower);
505	var titleSpectralRangeUpper = document.createTextNode("Upper Bound :");
506	document.getElementById("spectralRangeUpper").appendChild(titleSpectralRangeUpper);
507	//zone texte SpectralRangeLower
508	var inputSpectralRangeLower = $( document.createElement( "input" ) );
509	inputSpectralRangeLower.attr( {id:"RangeLower", class:"styleInputs"} );
510	inputSpectralRangeLower.val(0);
511	//pour mettre Ã jour le menu dÃ©roulant des transitions
512	inputSpectralRangeLower.bind( 'blur', this, jQuery.proxy( this.requestTransition, this ));
513	this.containerFormSpectralRangeLower.append( inputSpectralRangeLower );
514	//zone texte SpectralRangeUpper
515	var inputSpectralRangeUpper = $( document.createElement( "input" ) );
516	inputSpectralRangeUpper.attr( {id:"RangeUpper"} );
517	inputSpectralRangeUpper.val(35877.030506);
518	//pour mettre Ã jour le menu dÃ©roulant des transitions
519	inputSpectralRangeUpper.bind( 'blur', this, jQuery.proxy( this.requestTransition, this ));
520	this.containerFormSpectralRangeUpper.append( inputSpectralRangeUpper );
521
522	//titre menu deroulant transition upper
523	var titleTransitionUpper = document.createTextNode("Upper Bound :");
524	document.getElementById("transitionUpperTitle").appendChild(titleTransitionUpper);
525	// Create menu deroulant transition upper
526	// var paramSelectTransitionUpper = new Object();
527	// paramSelectTransitionUpper.id = "transition1";
528	// paramSelectTransitionUpper.parent = $("#transitionUpper");
529	// this.selectTransitionUpper = new Select( paramSelectTransitionUpper );
530	// this.selectTransitionUpper.add( '-1', "Select a molecule" );
531	// this.selectTransitionUpper.selectFirst( false );
532
533	this.selectTransitionUpper = $( document.createElement( "select" ) );
534	this.selectTransitionUpper.attr( {id:"transition1"} );
535	var optTransitionUpper = $( document.createElement( "option" ) );
536	optTransitionUpper.attr( {value:"-1", text:"Select a molecule"} );
537	//var transitionsLower ="000";
538	// opt2.bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
539	this.selectTransitionUpper.append(optTransitionUpper);
540	$("#transitionUpper").append(this.selectTransitionUpper);
541
542
543	//titre menu deroulant transition lower
544	var titleTransitionLower = document.createTextNode("Lower Bound :");
545	document.getElementById("transitionLowerTitle").appendChild(titleTransitionLower);
546	// Create menu deroulant transition lower
547	// var paramSelectTransitionLower = new Object();
548	// paramSelectTransitionLower.id = "transition2";
549	// paramSelectTransitionLower.parent = $("#transitionLower");
550	// this.selectTransitionLower = new Select( paramSelectTransitionLower );
551	// this.selectTransitionLower.add( '-1', "Select a molecule");
552	// this.selectTransitionLower.selectFirst( false );
553	this.selectTransitionLower = $( document.createElement( "select" ) );
554	this.selectTransitionLower.attr( {id:"transition2"} );
555	var optTransitionLower = $( document.createElement( "option" ) );
556	optTransitionLower.attr( {value:"-1", text:"Select a molecule"} );
557	this.selectTransitionLower.append(optTransitionLower);
558	$("#transitionLower").append(this.selectTransitionLower);
559
560	//bouton reset pour les transition
561	var resetButton = new Button( {value:"Reset", parent:$( "#transitionReset" ), id:"buttonReset", className: "gray_button", onClick:jQuery.proxy( this.requestTransition, this )} );
562
563
564	// //menu dÃ©roulant js en javascript sans passer par le modele
565	// var select = document.createElement('select');
566	// select.id = "transiEssai";
567	// select.name ="transiEssai";
568	//
569	// var opt = document.createElement('option');
570	// opt.setAttribute('value','id1');
571	// var theText = document.createTextNode("id1");
572	// opt.appendChild(theText);
573	// select.appendChild(opt);
574	//
575	// var opt = document.createElement('option');
576	// opt.setAttribute('value','id2');
577	// var theText = document.createTextNode("id2");
578	// opt.appendChild(theText);
579	//
580	// //opt.onclick=jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]);
581	// select.appendChild(opt);
582	// document.getElementById("transitionLower").appendChild(select);
583
584
585	//menu dÃ©roulant en jquery sans passer par le modele
586	// this.select2 = $( document.createElement( "select" ) );
587	// this.select2.attr( {id:"transiEssai2", name:"transiEssai2"} );
588	// var opt2 = $( document.createElement( "option" ) );
589	// opt2.attr( {value:"id3", text:"zzz"} );
590	// //var transitionsLower ="000";
591	// // opt2.bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
592	// this.select2.append(opt2);
593	// $("#transitionLower").append(this.select2);
594
595
596	//Zone texte Intensity
597	//Titre
598	var titleIntensityLower = document.createTextNode("Lower Bound :");
599	document.getElementById("intensityLower").appendChild(titleIntensityLower);
600	var titleIntensityUpper = document.createTextNode("Upper Bound :");
601	document.getElementById("intensityUpper").appendChild(titleIntensityUpper);
602	//zone texte IntensityLower
603	var inputIntensityLower = $( document.createElement( "input" ) );
604	inputIntensityLower.attr( {id:"intensityLo", class:"styleInputs"} );
605	inputIntensityLower.val(0);
606	this.containerFormIntensityLower.append( inputIntensityLower );
607	//zone texte IntensityUpper
608	var inputIntensityUpper = $( document.createElement( "input" ) );
609	inputIntensityUpper.attr( {id:"intensityUp"} );
610	inputIntensityUpper.val(1e-16);
611	this.containerFormIntensityUpper.append( inputIntensityUpper );
612
613	//Zone text Mean Value
614	//Titre
615	var titleMeanValue = document.createTextNode("Step :");
616	document.getElementById("meanValue1").appendChild(titleMeanValue);
617	//champ input
618	var inputMeanValue = $( document.createElement( "input" ) );
619	inputMeanValue.attr( {id:"meanValue2"} );
620	inputMeanValue.val(0);
621	this.containerFormMeanValue1.append( inputMeanValue );
622	inputMeanValue.bind( 'blur', this, jQuery.proxy( this.onBlurInputMeanValue, this ));
623
624	// Create menu deroulant type de graphe
625	var paramNbCourbes = new Object();
626	paramNbCourbes.id = "SelectNbCourbes";
627	paramNbCourbes.parent = $("#NbCourbes");
628	this.SelectNbCourbes = new Select( paramNbCourbes );
629	this.SelectNbCourbes.add( 'ca', "One curve for all selection", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
630	this.SelectNbCourbes.add( 'cm', "One curve for each molecule selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
631	this.SelectNbCourbes.add( 'ci', "One curve for each isotopologue selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
632	this.SelectNbCourbes.add( 'gm', "One graph for each molecule selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
633	this.SelectNbCourbes.add( 'gi', "One graph for each isotopologue selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
634	this.SelectNbCourbes.selectFirst( false );
635
636	// Create menu deroulant 1er choix axe des y
637	//Titre
638	var titleAxeY1 = document.createTextNode("Choose the first vertical axis");
639	document.getElementById("axeY1").appendChild(titleAxeY1);
640	var spaceBr = document.createElement ("br");
641	document.getElementById("axeY1").appendChild(spaceBr);
642	//menu dÃ©roulant
643	var paramSelectAxeY1 = new Object();
644	paramSelectAxeY1.id = "selectAxeY1";
645	paramSelectAxeY1.parent = $("#axeY1");
646	this.selectTraceAxeY1 = new Select( paramSelectAxeY1 );
647	this.selectTraceAxeY1.add( 'B', "Intensity", jQuery.proxy(this.onClickSelectTraceAxeY1, this ));
648	this.selectTraceAxeY1.add( 'C', "Air broadening pressure halfwidth", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
649	this.selectTraceAxeY1.add( 'D', "Energy of the lower transition level", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
650	this.selectTraceAxeY1.add( 'F', "Temperature dependence coefficient n of the air broadening halfwidth ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
651	this.selectTraceAxeY1.add( 'N', "Self broadening pressure halfwidth (HWHM)", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
652	this.selectTraceAxeY1.add( 'O', "Air pressure shift of the line transition", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
653	this.selectTraceAxeY1.add( 'R', "Temperature dependence coefficient of the air pressure shift ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
654	this.selectTraceAxeY1.selectFirst( false );
655
656
657	// Create menu deroulant type d'Ã©chelle linÃ©aire ou logarithmique pour le choix y1
658	//Titre
659	var titleScaleY1 = document.createTextNode("Select the type of Scale (if intensity is choosen)");
660	document.getElementById("scaleY1Titre").appendChild(titleScaleY1);
661	//menu dÃ©roulant
662	var paramSelectScaleY1 = new Object();
663	paramSelectScaleY1.id = "SelectScaleY1";
664	paramSelectScaleY1.parent = $("#scaleY1");
665	this.selectScaleY1 = new Select( paramSelectScaleY1 );
666	this.selectScaleY1.add( 'l', "Linear" );
667	this.selectScaleY1.add( '-log_scale', "Logarithmic" );
668	this.selectScaleY1.selectFirst( false );
669
670	// Create menu deroulant style de tracer Y1
671	//Titre
672	var titleTypeTrace = document.createTextNode("Select the type of plot");
673	document.getElementById("typePlotY1").appendChild(titleTypeTrace);
674	var spaceBr = document.createElement ("br");
675	document.getElementById("typePlotY1").appendChild(spaceBr);
676	//menu dÃ©roulant
677	var paramSelectTypeTraceY1 = new Object();
678	paramSelectTypeTraceY1.id = "SelectTypePlotY1";
679	paramSelectTypeTraceY1.parent = $("#typePlotY1");
680	this.selectTypeTraceY1 = new Select( paramSelectTypeTraceY1 );
681	this.selectTypeTraceY1.add( 'l', "Lines" );
682	this.selectTypeTraceY1.add( 'p', "Dots" );
683	this.selectTypeTraceY1.add( 'i', "Peaks" );
684	this.selectTypeTraceY1.add( 'lp', "Lines and Dots" );
685	this.selectTypeTraceY1.selectFirst( false );
686
687
688	// Create menu deroulant 2eme choix axe des y
689	//Titre
690	var titleAxeY2 = document.createTextNode("Choose the second vertical axis");
691	document.getElementById("axeY2Titre").appendChild(titleAxeY2);
692	//menu dÃ©roulant
693	var paramSelectAxeY2 = new Object();
694	paramSelectAxeY2.id = "selectAxeY2";
695	paramSelectAxeY2.parent = $("#axeY2");
696	this.selectTraceAxeY2 = new Select( paramSelectAxeY2 );
697	this.selectTraceAxeY2.add( 'no', "None", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
698	this.selectTraceAxeY2.add( 'B', "Intensity", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
699	this.selectTraceAxeY2.add( 'C', "Air broadening pressure halfwidth", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
700	this.selectTraceAxeY2.add( 'D', "Energy of the lower transition level", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
701	this.selectTraceAxeY2.add( 'F', "Temperature dependence coefficient n of the air broadening halfwidth ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
702	this.selectTraceAxeY2.add( 'N', "Self broadening pressure halfwidth (HWHM)", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
703	this.selectTraceAxeY2.add( 'O', "Air pressure shift of the line transition", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
704	this.selectTraceAxeY2.add( 'R', "Temperature dependence coefficient of the air pressure shift ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
705	this.selectTraceAxeY2.selectFirst( false );
706
707	// Create menu deroulant type d'Ã©chelle linÃ©aire ou logarithmique pour le choix y2
708	//Titre
709	var titleScaleY2 = document.createTextNode("Select the type of Scale (if intensity is choosen)");
710	document.getElementById("scaleY2Titre").appendChild(titleScaleY2);
711	//menu dÃ©roulant
712	var paramSelectScaleY2 = new Object();
713	paramSelectScaleY2.id = "SelectScaleY2";
714	paramSelectScaleY2.parent = $("#scaleY2");
715	this.selectScaleY2 = new Select( paramSelectScaleY2 );
716	this.selectScaleY2.add( 'l', "Linear" );
717	this.selectScaleY2.add( '-log_scale2', "Logarithmic" );
718	this.selectScaleY2.selectFirst( false );
719	//est inactif par defaut car selectTraceAxeY2 est positionne a none par defaut
720	document.getElementById("scaleY2Titre").className = "notActiveText";
721	this.selectScaleY2.disable();
722
723	// Create menu deroulant style de tracer Y2
724	//Titre
725	var titleTypeTrace = document.createTextNode("Select the type of plot");
726	document.getElementById("typePlotY2Titre").appendChild(titleTypeTrace);
727	//menu dÃ©roulant
728	var paramSelectTypeTraceY2 = new Object();
729	paramSelectTypeTraceY2.id = "SelectTypePlotY2";
730	paramSelectTypeTraceY2.parent = $("#typePlotY2");
731	this.selectTypeTraceY2 = new Select( paramSelectTypeTraceY2 );
732	this.selectTypeTraceY2.add( 'l', "Lines" );
733	this.selectTypeTraceY2.add( 'p', "Dots" );
734	this.selectTypeTraceY2.add( 'i', "Peaks" );
735	this.selectTypeTraceY2.add( 'lp', "Lines and Dots" );
736	this.selectTypeTraceY2.selectFirst( false );
737	//est inactif par defaut car selectTraceAxeY2 est positionne a none par defaut
738	document.getElementById("typePlotY2Titre").className = "notActiveText";
739	this.selectTypeTraceY2.disable();
740
741
742	this.createMolecules($('#BDD-GEISA2011'), this.arrayGeisa2011, "GEISA2011");
743	this.createMolecules($('#BDD-GEISA2003'), this.arrayGeisa2003, "GEISA2003");
744	this.createMolecules($('#BDD-GEISAIASI2011'), this.arrayGeisaIasi2011, "GEISAIASI2011");
745	this.createMolecules($('#BDD-GEISAIASI2003'), this.arrayGeisaIasi2003, "GEISAIASI2003");
746
747
748	// var submitButton = new Button( {value:"Submit", parent:$( "#boutonSubmit" ), id:"button_submit_3", className: "red_button", classNameText:"red_button_text", onClick:jQuery.proxy( this.onClickSubmit, this )} );
749	var submitButton = new Button( {value:"Submit", parent:$( "#boutonSubmit" ), id:"button_submit_3", className: "positive", onClick:jQuery.proxy( this.onClickSubmit, this )} );
750	},
751
752
753
754
755	/**
756	* This method creates the case to check for the moles
757	* create cases Ã cocher pour les molÃ©cules
758	* @param container
759	* @param moleculesArray
760	*/
761	//createMolecules: function(container, moleculesArray)
762	createMolecules: function(container, moleculesArray, BddVersion)
763	{
764	var table = $(document.createElement("table"));
765	container.append(table);
766	// var tr = $(document.createElement("tr"));
767	// tr.attr({valign: "top"});
768	// table.append(tr);
769	var i=0;
770	//nombre de molecules par ligne
771	var l=10;
772	//taille du tableau
773	//alert("l" +moleculesArray.length);
774	// parseInt : partie entiÃšre
775	// var res = parseInt(8/3);
776	//alert("res="+res);
777
778	$.each(moleculesArray, jQuery.proxy( function(index, moleculeElement )
779	{
780
781
782	//this.tr et non var tr pour que tr existe encore Ã la sortie du if
783	if ( index == (i*l))
784	{
785	//alert(index);
786	this.tr = $(document.createElement("tr"));
787	this.tr.attr({valign: "top"});
788	table.append(this.tr);
789	i=i+1;
790
791	}
792	var td = $(document.createElement("td"));
793	this.tr.append(td);
794
795	var span= $(document.createElement("span"));
796	span.addClass("molecule");
797	td.append(span);
798
799	var input = $(document.createElement("input"));
800	input.attr({type:"checkbox", id:"all-"+moleculeElement.id+"-"+BddVersion});
801	input.bind( 'click', this, jQuery.proxy( this.cliquetout, [this, moleculeElement.id, BddVersion ] ));
802	span.append(input);
803
804	var a = $(document.createElement("a"));
805	a.html("<b>"+moleculeElement.name+"</b>");
806
807	a.bind( 'click', this, jQuery.proxy( this.visibilite, [this,"Cache-"+ moleculeElement.id] ));
808	span.append(a);
809
810	var div= $(document.createElement("div"));
811	div.addClass("divViolet");
812	div.attr({id:"Cache-"+moleculeElement.id, style: "display:none"});
813	td.append(div);
814
815	var spanIsotopes= $(document.createElement("span"));
816	spanIsotopes.addClass("isotope");
817	spanIsotopes.attr({id:moleculeElement.id+"Isotope"+BddVersion});
818	div.append(spanIsotopes);
819
820
821	this.createIsotopes($("#"+moleculeElement.id+"Isotope"+BddVersion), moleculeElement.isotopesArray, moleculeElement.id, BddVersion);
822
823
824	}, this) );
825
826
827	},
828
829	createIsotopes: function(container, isotopesArray, moleculeElement, BddVersion )
830	{
831
832
833	$.each(isotopesArray, jQuery.proxy( function( index, isotopeElement )
834	{
835	container.append("   ");
836	var inputIsotopes = $(document.createElement("input"));
837	inputIsotopes.attr({type:"checkbox", id:"chk-"+moleculeElement+"_"+isotopeElement+"-"+BddVersion, name:"moles", value:moleculeElement+"_"+isotopeElement});
838	inputIsotopes.bind( 'click', this, jQuery.proxy( this.cliqueIsotope, [this, moleculeElement+"_"+isotopeElement, moleculeElement, BddVersion ] ));
839	container.append(inputIsotopes);
840	container.append(isotopeElement);
841	var br = $(document.createElement("br"));
842	container.append(br);
843
844	}, this) );
845	},
846
847	// <table><tr><td>
848	// <span class="molecule"><input type=checkbox id=all-ch3cn-GEISA2011 onclick="cliquetout('this, ch3cn, GEISA2011');">
849	// <a href="javascript:visibilite('this, Cache-ch3cn');"><B>CH<sub>3</sub>CN</a></B>
850	// </span>
851	// <div class="divViolet" id="Cache-ch3cn" style="display:none;">
852	// <span class="isotope" id="ch3cnIsotopeGEISA2011">   <input type=checkbox id=chk-ch3cn_234-GEISA2011 name=moles value=ch3cn_234 onclick="cliqueIsotope('this, ch3cn_234, GEISA2011');">234<br></span>
853	// </div>
854	// </td></tr></table>
855
856	// REQUESTS ********************************************************
857	//rÃ©cupÃ©ration de toutes les valeurs choisies par l'utilisateur et transformation de ces valeurs pour les inclure dans la requÃªte fortran
858	requestGeisa: function()
859	{
860
861	//on va chercher les chemin dÃ©clarÃ© dans le controller
862	this.pathProcess = "<%=Controller.PATH_PROCESS%>";
863	this.LongPathImages = "<%=Controller.LONG_PATH_IMAGES%>";
864
865
866
867	//sÃ©lection du fichier binaire de la base geisa sÃ©lectionnÃ©e
868	var paramBase = "";
869	switch (this.selectDatabase.getValue()) {
870	case 'GEISA2003':
871	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISA2003_asc_gs03_v1.0 -input_format asc -database_name GEISA2003 -database_type gs03";
872	break;
873	case 'GEISA2011':
874	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISA2009_bin -database_name GEISA2011 -database_type gs08";
875	break;
876	case 'GEISAIASI2003':
877	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISAIASI2003_asc_gsi03_v1.0 -input_format asc -database_name GEISAIASI2003 -database_type gsi03";
878	break;
879	case 'GEISAIASI2011':
880	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISAIASI2011_bin_gsi08_v1.0 -database_name GEISAIASI2011 -database_type gsi08";
881	break;
882	}
883
884
885	//molÃ©cules
886	//rÃ©cupÃ©ration des molÃ©cules sÃ©lectionnÃ©es
887	var inputs = document.getElementsByTagName( 'input' );
888	var count = inputs.length;
889	var isotopesSelectedName ="";
890	// alert(this.selectDatabase.getValue());
891	var i=0;
892	this.nbIsotopes = 0;
893	this.nbMolecules = 0;
894	this.nbGraph = 0;
895	for( i = 0; i < count; i++ )
896	{
897	var input = inputs.item( i );
898	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
899	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
900	{
901	//nombre d'isotopes sÃ©lectionnÃ©s
902	this.nbIsotopes = this.nbIsotopes + 1;
903
904	var molN=input.value;
905	var molN1=molN.replace("_", ":");
906	// exemple : -moleisot h2o:161 -moleisot h2o:162 -moleisot co2:626 -moleisot co2:627 -moleisot o3:666 -moleisot o3:668
907	isotopesSelectedName = isotopesSelectedName+"-moleisot "+molN1+" ";
908	}
909	//rÃ©cupÃ©ration du nombre de molÃ©cules sÃ©lectionnÃ©es
910	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("all-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
911	{
912	//nombre d'isotopes sÃ©lectionnÃ©s
913	this.nbMolecules = this.nbMolecules + 1;
914	}
915	}
916
917
918	//averti l'utilisateur qu'il faut au moins sÃ©lectionner un isotope
919	if (this.nbIsotopes == 0) {
920	alert("Error : no molecule or isotopoloque was selected");
921	return;
922	}
923
924
925
926	//sÃ©lection du nombre de courbes ou de graphs
927
928	var nbCourbes = "";
929	switch (this.SelectNbCourbes.getValue()) {
930	case 'cm':
931	nbCourbes = "-separate_mol -same_graph ";
932	this.nbGraph = 1;
933	this.nbCourbe = this.nbMolecules;
934	if (this.nbCourbe > 8) {
935	alert("Too much molecules selected to draw one curve for each molecule selected");
936	return;
937	}
938	break;
939	case 'ci':
940	nbCourbes = "-separate_iso -same_graph ";
941	this.nbGraph = 1;
942	this.nbCourbe = this.nbIsotopes;
943	if (this.nbCourbe > 8) {
944	alert("Too much isotopologues selected to draw one curve for each isotopologues selected");
945	return;
946	}
947	break;
948	case 'gm':
949	nbCourbes = "-separate_mol ";
950	this.nbGraph = this.nbMolecules;
951	if (this.nbGraph > 20) {
952	alert("Too much molecules selected to draw one graph for each molecules selected");
953	return;
954	}
955	break;
956	case 'gi':
957	nbCourbes = "-separate_iso ";
958	this.nbGraph = this.nbIsotopes;
959	if (this.nbGraph > 20) {
960	alert("Too much isotopologues selected to draw one graph for each isotopologues selected");
961	return;
962	}
963	break;
964	default:
965	nbCourbes = "";
966	this.nbGraph = 1;
967	break;
968	}
969
970
971	//Spectral range
972	var rangeLower="-wavenb_min "+$("#RangeLower").val();
973	var rangeUpper="-wavenb_max "+$("#RangeUpper").val();
974
975	//controle des valeurs entrÃ©es par l'utilisateur
976
977	switch (this.selectDatabase.getValue()) {
978	case 'GEISA2003':
979	//isNaN = n'est pas un nombre
980	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) > 35877.030506)
981	{
982	alert("Error: Invalid value for lower spectral range area");
983	return;
984	}
985
986	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) > 35877.030506)
987	{
988	alert("Error: Invalid value for upper spectral range area");
989	return;
990	}
991	break;
992	case 'GEISA2011':
993	//isNaN = n'est pas un nombre
994	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) > 35877.030506)
995	{
996	alert("Error: Invalid value for lower spectral range area");
997	return;
998	}
999
1000	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) > 35877.030506)
1001	{
1002	alert("Error: Invalid value for upper spectral range area");
1003	return;
1004	}
1005	break;
1006	case 'GEISAIASI2003':
1007	//isNaN = n'est pas un nombre
1008	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) < 599.000793 \|\| parseInt($("#RangeLower").val()) > 3000.998767)
1009	{
1010	alert("Error: Invalid value for lower spectral range area");
1011	return;
1012	}
1013
1014	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) < 599.000793 \|\| parseInt($("#RangeUpper").val()) > 3000.998767)
1015	{
1016	alert("Error: Invalid value for upper spectral range area");
1017	return;
1018	}
1019	break;
1020	case 'GEISAIASI2011':
1021	//isNaN = n'est pas un nombre
1022	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) < 599.000793 \|\| parseInt($("#RangeLower").val()) > 3000.998767)
1023	{
1024	alert("Error: Invalid value for lower spectral range area");
1025	return;
1026	}
1027
1028	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) < 599.000793 \|\| parseInt($("#RangeUpper").val()) > 3000.998767)
1029	{
1030	alert("Error: Invalid value for upper spectral range area");
1031	return;
1032	}
1033	break;
1034	}
1035
1036
1037	if ($("#RangeLower").val() == "" )
1038	{
1039	rangeLower="";
1040	}
1041
1042	if ($("#RangeUpper").val() == "" )
1043	{
1044	rangeUpper="";
1045	}
1046	if( parseInt($("#RangeLower").val()) > parseInt($("#RangeUpper").val()) )
1047	{
1048	alert("Error: lower spectral range area is superior to upper spectral range area ");
1049	return;
1050	}
1051
1052
1053	//Transitions to do
1054	//exemple de requete avec transition
1055	//./all -filein line_GEISA2009_bin -moleisot h2o:161 -wavenb_min 1 -wavenb_max 1000 -database_name "GEISA2011" -vib_ident_lower '[000]'
1056	//var TransitionUpper ="-vib_ident_upper '[ "+this.selectTransitionUpper.getValue()+" ]'";
1057	var transitionUpper=document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value;
1058	//Enlever les espaces blancs
1059	// TransitionUp= TransitionUp.replace(/ /g,"");
1060	//var TransitionUpper ="-vib_ident_upper ["+TransitionUp+"]";
1061	// var transitionUpper = "["+transitionUp+"]";
1062	alert ("transitionUpper"+transitionUpper);
1063
1064	// var TransitionLower ="-vib_ident_lower '[ "+this.selectTransitionLower.getValue()+" ]'";
1065	var transitionLower=document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value;
1066	// TransitionLo= TransitionLo.replace(/ /g,"");
1067	// var TransitionLower ="-vib_ident_lower ["+TransitionLo+"]";
1068	//var transitionLower ="["+transitionLo+"]";
1069
1070	//pas de transition sÃ©lectionnÃ©e
1071	// if (( this.selectTransitionUpper.getValue()== -1) \|\| (this.selectTransitionUpper.getValue() == "transition" ))
1072	// {
1073	// TransitionUpper ="";
1074	// }
1075	// if (( this.selectTransitionLower.getValue()== -1) \|\| (this.selectTransitionLower.getValue() == "transition" ))
1076	// {
1077	// TransitionLower ="";
1078	// }
1079	if (( document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == -1) \|\| (document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == "transition" ))
1080	{
1081	transitionUpper ="no";
1082	}
1083	if (( document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == -1) \|\| (document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == "transition" ))
1084	{
1085	transitionLower ="no";
1086	}
1087
1088	if ( document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == "")
1089	{
1090	transitionUpper ="noValue";
1091	}
1092
1093	if ( document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == "")
1094	{
1095	transitionLower ="noValue";
1096	}
1097
1098	var sel = document.getElementById('transition1');
1099	var idupper = sel.options[sel.selectedIndex].value;
1100	//alert("idupper"+idupper);
1101
1102	//Intensity range
1103	var intensityLower="-int_min "+$("#intensityLo").val();
1104	var intensityUpper="-int_max "+$("#intensityUp").val();
1105
1106	//controle des valeurs entrÃ©es par l'utilisateur
1107	if(isNaN($("#intensityLo").val()) == true \|\| $("#intensityLo").val() < 0 )
1108	{
1109	alert("Error: Invalid value for lower intensity range area");
1110	return;
1111	}
1112	if ($("#intensityLo").val() == "" )
1113	{
1114	intensityLower="";
1115	}
1116	if(isNaN($("#intensityUp").val()) == true \|\| $("#intensityUp").val() < 0 )
1117	{
1118	alert("Error: Invalid value for upper intensity range area");
1119	return;
1120	}
1121	if ($("#intensityUp").val() == "" )
1122	{
1123	intensityUpper="";
1124	}
1125
1126	//to do javascript ne sait comparer des exponenciels
1127	// if( $("#intensityLo").val() > $("#intensityUp").val() )
1128
1129	// {
1130	// alert("Error: lower intensity range area is superior to upper intensity range area ");
1131	// return;
1132	// }
1133
1134
1135	//Valeur de mean value
1136	var meanValue = "-step "+$("#meanValue2").val();
1137	//controle des valeurs entrÃ©es par l'utilisateur
1138	//Si ce n'est pas un nombre ou si il est nÃ©gatif
1139	if(isNaN($("#meanValue2").val()) == true \|\| $("#meanValue2").val() < 0 )
1140	{
1141	alert("Error: Invalid value for Average calculation area");
1142	return;
1143	}
1144	//si aucune valeur
1145	if ($("#meanValue2").val() == "" )
1146	{
1147	meanValue="";
1148	}
1149
1150	//sÃ©lection du premier choix pour l'axe des Y
1151	var field="-field "+this.selectTraceAxeY1.getValue();
1152
1153
1154	//sÃ©lection du type d'Ã©chelle pour le parametre Y1 (il y a une valeur pour ce champ que si logaritmic est choisi et si l'option est activÃ©e)
1155	if (this.selectScaleY1.getValue() == '-log_scale' && this.selectScaleY1.isDisable == false)
1156	{
1157	var logScale = this.selectScaleY1.getValue();
1158	}
1159	else
1160	{
1161	var logScale = ""
1162	}
1163
1164	//sÃ©lection du type de tracÃ© pour Y1
1165	var lineType="-line_type "+this.selectTypeTraceY1.getValue();
1166
1167
1168	//sÃ©lection ou non d'un 2eme choix pour l'axe des Y (pas de valeur pour ce champ si choix none ou si l'option n'est pas activÃ©e)
1169	if (this.selectTraceAxeY2.getValue() == 'no' \|\| this.selectTraceAxeY2.isDisable == true)
1170	{
1171	var field2 = "";
1172	}
1173	else
1174	{
1175	var field2 = "-field2 "+this.selectTraceAxeY2.getValue();
1176	}
1177
1178	//sÃ©lection du type d'Ã©chelle pour le parametre Y2 (il y a une valeur pour ce champ que si logaritmic est choisi et si l'option est activÃ©e)
1179	if (this.selectScaleY2.getValue() == '-log_scale2' && this.selectScaleY2.isDisable == false)
1180	{
1181	var logScale2 =this.selectScaleY2.getValue();
1182	}
1183	else
1184	{
1185	var logScale2 = "";
1186	}
1187
1188
1189	//sÃ©lection du type de tracÃ© pour Y2 (pas de valeur si l'option n'est pas activÃ©e)
1190	if ( this.selectTypeTraceY2.isDisable == true)
1191	{
1192	var lineType2 = "";
1193	}
1194	else
1195	{
1196	var lineType2 = "-line_type2 "+this.selectTypeTraceY2.getValue();
1197	}
1198
1199
1200	//ouverture de la div de l'image d'attente
1201	this.loadingGraphics.display();
1202
1203
1204
1205
1206	//construction de la requÃªte Fortran
1207	// var parameters = "&fortranRequest="+paramBase+" "+isotopesSelectedName+" "+rangeLower+" "+rangeUpper+" "+TransitionUpper+" "+TransitionLower+" "+intensityLower+" "+intensityUpper+" "+
1208	// meanValue+" "+nbCourbes+" "+field+" "+logScale+" "+lineType+" "+field2+" "+logScale2+" "+lineType2;
1209
1210	var parameters = "&fortranRequest="+paramBase+" "+isotopesSelectedName+" "+rangeLower+" "+rangeUpper+" "+intensityLower+" "+intensityUpper+" "+
1211	meanValue+" "+nbCourbes+" "+field+" "+logScale+" "+lineType+" "+field2+" "+logScale2+" "+lineType2;
1212
1213
1214	//remplacement de espace par "EEE" pour que le shell script ne voit qu'un seul argument en entrÃ©e
1215	parameters=parameters.replace(/ /g,"EEE");
1216	transitionUpper=transitionUpper.replace(/ /g,"EEE");
1217	//le + est interprÃ©tÃ© comme un espace (plus sera retransformÃ© en + dans le shell)
1218	transitionUpper=transitionUpper.replace(/\+/g,"plus");
1219	transitionLower=transitionLower.replace(/ /g,"EEE");
1220	transitionLower=transitionLower.replace(/\+/g,"plus");
1221
1222
1223	//envoie de la requÃªte au controller
1224	//en cas de succes appel de la fonction "handleGeisa"
1225	$.ajax( {
1226	//url: "project?methodName=createUserRequest&"+parameters+"&nbGraph="+ this.nbGraph,
1227	url: "project?methodName=createUserRequest&"+parameters+"&transitionUpper="+ transitionUpper+"&transitionLower="+ transitionLower+"&nbGraph="+ this.nbGraph,
1228	success:jQuery.proxy( this.handleGeisa, this )
1229	} );
1230	},
1231
1232
1233	//requÃªte pour interrogation de la base de donnÃ©es des transitions
1234	requestTransition: function()
1235	{
1236
1237	var nbMolecules=0;
1238
1239	//RÃ©cupÃ©ration du spectral range
1240	var spectralRangeLower = $("#RangeLower").val();
1241	var spectralRangeUpper = $("#RangeUpper").val();
1242
1243	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1244	var inputs = document.getElementsByTagName( 'input' );
1245	var count = inputs.length;
1246	var isotopesSelectedNameArray = new Array();
1247	var i=0;
1248
1249	for( i = 0; i < count; i++ )
1250	{
1251	var input = inputs.item( i );
1252	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1253	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
1254	{
1255	var molN=input.value;
1256	var molN1=molN.replace("_", ":");
1257	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1258	isotopesSelectedNameArray.push(molN1);
1259	}
1260
1261	//rÃ©cupÃ©ration du nombre de molÃ©cules sÃ©lectionnÃ©es
1262	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("all-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
1263	{
1264	nbMolecules = nbMolecules + 1;
1265	}
1266
1267	}
1268	//alert ("nbMolecules"+nbMolecules);
1269	//si le nombre de molÃ©cule sÃ©lectionnÃ©es est supÃ©rieure Ã 1 les menus des transition sont inactifs
1270	if (nbMolecules > 1)
1271	{
1272
1273	//this.selectTransitionLower.disable();
1274	//this.selectTransitionUpper.disable();
1275	//ajoute une classe Ã celle dÃ©jÃ existante de transitionUpperTitle
1276	$("#transitionUpperTitle").addClass("notActiveText");
1277	$("#transitionLowerTitle").addClass("notActiveText");
1278	}
1279	else
1280	{
1281	//this.selectTransitionLower.enable();
1282	//this.selectTransitionUpper.enable();
1283	$("#transitionUpperTitle").removeClass("notActiveText");
1284	$("#transitionLowerTitle").removeClass("notActiveText");
1285	}
1286
1287
1288	//On ne fait appel Ã la BDD des transitions et si au plus 1 molÃ©cule est sÃ©lectionnÃ©e
1289	if (nbMolecules == 1 )
1290	{
1291	// $.ajax( {
1292	// url: "project?methodName=getTransitionByIsotopeName&isotopesSelectedName="+isotopesSelectedName+"&GeisaSelectedDatabase="+GeisaSelectedDatabase+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper,
1293	// success:jQuery.proxy( this.handleRequestTransition, this )
1294	// } );
1295
1296	$.ajax( {
1297	url: "project?methodName=getTransitionByIsotopeName&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+this.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper,
1298	success:jQuery.proxy( this.handleRequestTransition, this )
1299	} );
1300
1301	}
1302	else
1303	{
1304	//pour rÃ©initialiser le menu dÃ©roulant si aucune ou plusieurs molÃ©cules sont sÃ©lectionnÃ©es
1305	document.getElementById("transition2").length=0;
1306	//this.selectTransitionUpper.clear();
1307	document.getElementById("transition1").length=0;
1308
1309	if (nbMolecules == 0 )
1310	{
1311	//this.selectTransitionLower.add('-1', "Select a molecule");
1312	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"Select a molecule", selected:"selected"} ));
1313	//this.selectTransitionUpper.add('-1', "Select a molecule");
1314	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"Select a molecule", selected:"selected"} ));
1315	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1316	//this.selectTransitionLower.selectFirst();
1317	//this.selectTransitionUpper.selectFirst();
1318	}
1319
1320	if (nbMolecules > 1 )
1321	{
1322	//this.selectTransitionLower.add('-1', "Select a molecule");
1323	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"", selected:"selected", disabled:"disabled"} ));
1324	//this.selectTransitionUpper.add('-1', "Select a molecule");
1325	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"", selected:"selected", disabled:"disabled"} ));
1326	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1327	//this.selectTransitionLower.selectFirst();
1328	//this.selectTransitionUpper.selectFirst();
1329	}
1330	}
1331	},
1332
1333
1334
1335
1336	//requÃªte pour interrogation de la base de donnÃ©es des transitions en fonction d'une transition lower
1337	requestTransitionByTransitionLower: function()
1338	{
1339	var context = this[0];
1340	//exemple transitionLower=" 000" : il y a 25 caractÃšres dans chaque transition
1341	context.transitionLower = this[1];
1342
1343	//RÃ©cupÃ©ration de la Base Geisa sÃ©lectionnÃ©e
1344	var GeisaSelectedDatabase = context.selectDatabase.getValue();
1345
1346	//RÃ©cupÃ©ration du spectral range
1347	var spectralRangeLower = $("#RangeLower").val();
1348	var spectralRangeUpper = $("#RangeUpper").val();
1349
1350	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1351	var inputs = document.getElementsByTagName( 'input' );
1352	var count = inputs.length;
1353	var isotopesSelectedNameArray = new Array();
1354	var i=0;
1355
1356	for( i = 0; i < count; i++ )
1357	{
1358	var input = inputs.item( i );
1359	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1360	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(context.selectDatabase.getValue())!= -1)
1361	{
1362	var molN=input.value;
1363	var molN1=molN.replace("_", ":");
1364	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1365	isotopesSelectedNameArray.push(molN1);
1366	}
1367
1368	}
1369
1370	//le passage de javascript Ã java par ajax transforme les + en espace donc transformation des + en plus et dans le controller on fait l'inverse
1371	var transitionLowerReplaced = context.transitionLower.replace(/\+/g,"plus");
1372
1373	//Appel Ã la BDD
1374
1375	$.ajax( {
1376	url: "project?methodName=getTransitionByIsotopeNameByTransitionLower&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+context.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper+"&transitionLower="+transitionLowerReplaced,
1377	success:jQuery.proxy( context.handleRequestTransitionByTransitionLower, context)
1378	} );
1379
1380
1381
1382	},
1383
1384
1385	//requÃªte pour interrogation de la base de donnÃ©es des transitions en fonction d'une transition upper
1386	requestTransitionByTransitionUpper: function()
1387	{
1388	var context = this[0];
1389	//exemple transitionLower=" 000" : il y a 25 caractÃšres dans chaque transition
1390	context.transitionUpper = this[1];
1391
1392	//RÃ©cupÃ©ration de la Base Geisa sÃ©lectionnÃ©e
1393	var GeisaSelectedDatabase = context.selectDatabase.getValue();
1394
1395	//RÃ©cupÃ©ration du spectral range
1396	var spectralRangeLower = $("#RangeLower").val();
1397	var spectralRangeUpper = $("#RangeUpper").val();
1398
1399	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1400	var inputs = document.getElementsByTagName( 'input' );
1401	var count = inputs.length;
1402	var isotopesSelectedNameArray = new Array();
1403	var i=0;
1404
1405	for( i = 0; i < count; i++ )
1406	{
1407	var input = inputs.item( i );
1408	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1409	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(context.selectDatabase.getValue())!= -1)
1410	{
1411	var molN=input.value;
1412	var molN1=molN.replace("_", ":");
1413	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1414	isotopesSelectedNameArray.push(molN1);
1415	}
1416
1417	}
1418	//le passage de javascript Ã java par ajax transforme les + en espace donc transformation des + en plus et dans le controller on fait l'inverse
1419	var transitionUpperReplaced = context.transitionUpper.replace(/\+/g,"plus");
1420
1421	//Appel Ã la BDD
1422	$.ajax( {
1423	url: "project?methodName=getTransitionByIsotopeNameByTransitionUpper&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+context.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper+"&transitionUpper="+transitionUpperReplaced,
1424	success:jQuery.proxy( context.handleRequestTransitionByTransitionUpper, context)
1425	} );
1426
1427
1428
1429	},
1430
1431
1432
1433	// requestTransition: function()
1434	// {
1435	// $.ajax( {
1436	// url: "project?methodName=transition&transitionValue="+ this.selectTransitionUpper.getValue(),
1437	// success:jQuery.proxy( this.handleRequestTransition, this )
1438	// } );
1439	// },
1440
1441	// HANDLES ******************************************************** = retours ajax
1442	//affichage sur l'interface
1443
1444	handleGeisa: function( result )
1445	{
1446
1447
1448	//chemin de l'image
1449	// this.pathImg = jQuery.parseJSON( result ).pathImg;
1450	this.pathImg = "<%=Controller.PATH_IMAGES%>";
1451	//numÃ©ro unique pour le nom du graph
1452	this.nb = jQuery.parseJSON( result ).nb;
1453	//Pour tracer le bon nombre de graphe et de bouton download
1454	var i=1;
1455	var content = '';
1456	for (i=1; i<this.nbGraph+1; i++) {
1457	content = content + '<img src=' + this.pathImg + "graph" + this.nb +"-"+i+ ".png"+ ' /><a href="project?methodName=downloadFile&fileName=' + "graph" + this.nb+"-"+i + ".png"+ '"><button class="dataProtocolDownloadButton">Download</button></a>';
1458	}
1459
1460	this.displayWindow(content);
1461	},
1462
1463
1464	// handleRequestTransition: function( result )
1465	// {
1466	// alert("youpi");
1467	// },
1468
1469
1470	handleRequestTransition: function( result )
1471	{
1472
1473
1474	// var transitions = jQuery.parseJSON( result ).transitions;
1475	var transitionsLower = jQuery.parseJSON( result ).transitionsLower;
1476	var transitionsUpper = jQuery.parseJSON( result ).transitionsUpper;
1477
1478	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1479	// this.selectTransitionLower.clear();
1480	document.getElementById("transition2").length=0;
1481	//this.selectTransitionUpper.clear();
1482	document.getElementById("transition1").length=0;
1483	// this.selectTransitionLower.add('transition', "Choose a transition");
1484	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1485
1486	// this.selectTransitionUpper.add('transition', "Choose a transition");
1487	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1488
1489	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1490	// this.selectTransitionLower.selectFirst();
1491	// this.selectTransitionUpper.selectFirst();
1492
1493	// alert ("transitionsUpper"+transitionsUpper);
1494	$.each(transitionsLower, jQuery.proxy( function(index, transitionsLower )
1495	{
1496	// this.selectTransitionLower.add(transitionsLower, transitionsLower,jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
1497
1498
1499	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:transitionsLower, text:transitionsLower} ).bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ])));
1500
1501	}, this));
1502
1503	$.each(transitionsUpper, jQuery.proxy( function(index, transitionsUpper )
1504	{
1505	//this.selectTransitionUpper.add(transitionsUpper, transitionsUpper,jQuery.proxy(this.requestTransitionByTransitionUpper, [this, transitionsUpper ]));
1506	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:transitionsUpper, text:transitionsUpper} ).bind( 'click', jQuery.proxy(this.requestTransitionByTransitionUpper, [this, transitionsUpper ])));
1507
1508	}, this));
1509
1510	},
1511
1512	handleRequestTransitionByTransitionLower : function( result )
1513	{
1514	//alert("transitionLower"+this.transitionLower);
1515	var transitionsUpperBis = jQuery.parseJSON( result ).transitionsUpperBis;
1516	//alert("transitionsUpper"+transitionsUpper);
1517
1518	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1519	// this.selectTransitionLower.clear();
1520	document.getElementById("transition2").length=0;
1521	//this.selectTransitionUpper.clear();
1522	document.getElementById("transition1").length=0;
1523	// while(0 < document.getElementById("transition1").length)
1524	// {
1525	// document.getElementById("transition1").options[0] = null;
1526	// }
1527
1528
1529	//this.selectTransitionLower.add(this.transitionLower, this.transitionLower);
1530	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled"} ));
1531	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:this.transitionLower, text:this.transitionLower, selected:"selected"} ));
1532	//this.selectTransitionUpper.add('transition', "Choose a transition");
1533	//rajout du text "Choose a transition" selectionnÃ© en premier mais on ne peut pa cliquer dessus
1534	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1535
1536
1537	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1538	//this.selectTransitionLower.selectFirst();
1539	//this.selectTransitionUpper.selectFirst();
1540
1541
1542
1543	$.each(transitionsUpperBis, jQuery.proxy( function(index, transitionsUpperBis )
1544	{
1545	// this.selectTransitionUpper.add(transitionsUpper, transitionsUpper);
1546	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:transitionsUpperBis, text:transitionsUpperBis} ));
1547
1548	}, this));
1549
1550	},
1551
1552
1553	handleRequestTransitionByTransitionUpper : function( result )
1554	{
1555	// alert("transitionUpper"+this.transitionUpper);
1556	var transitionsLowerBis = jQuery.parseJSON( result ).transitionsLowerBis;
1557	//alert("transitionsLower"+transitionsLower);
1558
1559	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1560	// this.selectTransitionLower.clear();
1561	document.getElementById("transition2").length=0;
1562	//this.selectTransitionUpper.clear();
1563	document.getElementById("transition1").length=0;
1564
1565	// this.selectTransitionLower.add('transition', "Choose a transition");
1566	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1567
1568	// this.selectTransitionUpper.add(this.transitionUpper, this.transitionUpper);
1569	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled"} ));
1570	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:this.transitionUpper, text:this.transitionUpper, selected:"selected"} ));
1571
1572
1573	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1574	//this.selectTransitionLower.selectFirst();
1575	//this.selectTransitionUpper.selectFirst();
1576
1577
1578
1579	$.each(transitionsLowerBis, jQuery.proxy( function(index, transitionsLowerBis )
1580	{
1581	//this.selectTransitionLower.add(transitionsLower, transitionsLower);
1582	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:transitionsLowerBis, text:transitionsLowerBis} ));
1583	}, this));
1584
1585	},
1586	// EVENTS ********************************************************
1587
1588
1589	//affichage de la valeur du spectral range et affichage du bloc des molecules en fonction de la base de donnees selectionnee
1590	onClickSelectDatabase: function(value)
1591	{
1592
1593	if ('GEISA2011' == value)
1594	{
1595	document.getElementById('spectralRangeTitre').innerHTML = "";
1596	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
1597	$("#RangeLower").val(0);
1598	$("#RangeUpper").val(35877.030506);
1599
1600	document.getElementById( "BDD-GEISA2011" ).style.display = "";
1601	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1602	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1603	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1604	}
1605
1606	if ('GEISAIASI2011' == value)
1607	{
1608	document.getElementById('spectralRangeTitre').innerHTML = "";
1609	document.getElementById('spectralRangeTitre').innerHTML = "Choosing spectral range (599.000793 to 3000.998767 cm<sup>-1</sup>)";
1610	$("#RangeLower").val(599.000793);
1611	$("#RangeUpper").val(3000.998767);
1612
1613	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1614	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "";
1615	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1616	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1617	}
1618
1619	if ('GEISA2003' == value)
1620	{
1621	document.getElementById('spectralRangeTitre').innerHTML = "";
1622	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
1623	$("#RangeLower").val(0);
1624	$("#RangeUpper").val(35877.030506);
1625
1626	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1627	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1628	document.getElementById( "BDD-GEISA2003" ).style.display = "";
1629	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1630	}
1631	if ('GEISAIASI2003' == value)
1632	{
1633	document.getElementById('spectralRangeTitre').innerHTML = "";
1634	document.getElementById('spectralRangeTitre').innerHTML = "Choosing spectral range (599.000793 to 3000.998767 cm<sup>-1</sup>)";
1635	$("#RangeLower").val(599.000793);
1636	$("#RangeUpper").val(3000.998767);
1637
1638	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1639	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1640	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1641	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "";
1642	}
1643
1644	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1645	this.requestTransition();
1646	},
1647
1648
1649
1650	//Actions dÃ©clenchÃ©es quand on clique sur le nom d'une molÃ©cule
1651	cliquetout: function()
1652	{
1653	var context = this[0];
1654	// exemple :moleculeName = ch3ch
1655	var moleculeName = this[1];
1656	var bddVersion = this[2];
1657	var inputs = document.getElementsByTagName( 'input' );
1658	var count = inputs.length;
1659	for( i = 0; i < count; i++ )
1660	{
1661	var input = inputs.item( i );
1662	//cliquer toutes les molÃ©cules et isotopes du meme nom dans toutes les bases
1663	//if( input.type == 'checkbox' && ( input.id == ('chk-' + name + '-GEISA-11') \|\| input.id == ('chk-' + name + '-GEISA-03') \|\| input.id == ('chk-' + name + '-GEISA-IASI-11') \|\| input.id == ('chk-' + name + '-GEISA-IASI-03')
1664	// \|\| input.id == (name + '-all-GEISA-03') \|\| input.id == (name + '-all-GEISA-11') \|\| input.id == (name + '-all-GEISA-IASI-03') \|\| input.id == (name + '-all-GEISA-IASI-11')))
1665
1666	if( input.type == 'checkbox' && ( input.id.indexOf('chk-' + moleculeName + '_') != -1 \|\| input.id.indexOf('all-'+moleculeName+'-')!= -1 ))
1667
1668	{
1669	input.checked = document.getElementById( 'all-'+ moleculeName + '-' + bddVersion ).checked;
1670	}
1671	}
1672	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1673	context.requestTransition();
1674	},
1675
1676	//actions dÃ©clenchÃ©es quand on clique sur un isotope
1677	cliqueIsotope: function()
1678	{
1679	var context = this[0];
1680	//exemple isotopeName = ch3cn_134
1681	var isotopeName = this[1];
1682	// exemple moleculeName= ch3cn
1683	var moleculeName = this[2];
1684	var bddVersion = this[3];
1685	var inputs = document.getElementsByTagName( 'input' );
1686	var count = inputs.length;
1687	var i = 0;
1688	for( i = 0; i < count; i++ )
1689	{
1690	input = inputs.item( i );
1691
1692	//id=chk-ch3cn_234-GEISA2011
1693	//cliquer ou decliquer le meme isotope dans toutes les bases
1694	if( input.type == 'checkbox' && input.id.indexOf('chk-' + isotopeName) != -1)
1695	{
1696	input.checked = document.getElementById( 'chk-' + isotopeName + '-' + bddVersion ).checked;
1697
1698	}
1699	// id=all-ch3cn-GEISA2011
1700	//pour dÃ©cocher la case de la molecule quand on dÃ©coche un isotope
1701	// if( input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName) != -1 && input.checked == true )
1702	// {
1703	// input.checked = false;
1704	// }
1705	}
1706
1707
1708	//pour cocher molecule quand on clique sur un isotope et dÃ©cocher molÃ©cule quand tous les isotopes de la molÃ©cule sont dÃ©cochÃ©s
1709	var nbIsotopeSelected=0;
1710
1711	for( i = 0; i < count; i++ )
1712	{
1713	input = inputs.item( i );
1714	if( input.type == 'checkbox' && input.id.indexOf('chk-'+moleculeName+'_') != -1 && input.id.indexOf(bddVersion) != -1 && input.checked == true )
1715	{
1716	nbIsotopeSelected=nbIsotopeSelected+1;
1717	}
1718
1719	}
1720
1721
1722	for( i = 0; i < count; i++ )
1723	{
1724	input = inputs.item( i );
1725	if (input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName+'-') != -1 && nbIsotopeSelected == 0)
1726	{
1727	input.checked = false;
1728	}
1729
1730	if (input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName+'-') != -1 && nbIsotopeSelected > 0)
1731	{
1732	input.checked = true;
1733	}
1734
1735	}
1736
1737	// alert("database"+context.selectDatabase.getSize());
1738
1739	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1740	context.requestTransition();
1741
1742	},
1743
1744
1745
1746	//pour cacher ou voir les isotopes d'une molecule
1747	visibilite: function( )
1748	{
1749	var context = this[0];
1750	var thingId = this[1];
1751	var divs = document.getElementsByTagName( 'div' );
1752	var count = divs.length;
1753	var i = 0;
1754	for( i = 0; i < count; i++ )
1755	{
1756	var div = divs.item( i );
1757
1758
1759	if ( div.id == thingId)
1760	{
1761	if( div.style.display == "none" )
1762	{
1763	div.style.display = "";
1764	}
1765	else
1766	{
1767	div.style.display = "none";
1768	}
1769	}
1770	}
1771	},
1772
1773
1774	onBlurInputMeanValue: function()
1775	{
1776	//si step est sup a 0, ajout d'une ligne Z aux parametres Y1 et y2 si elle n'est pas dÃ©jÃ prÃ©sente
1777	// !this.selectTraceAxeY1.content('Z') indique que "Z" n'exite pas dans le menu dÃ©roulant selectTraceAxeY1
1778	if ($("#meanValue2").val() > 0 && !this.selectTraceAxeY1.content('Z'))
1779
1780	{
1781
1782	this.selectTraceAxeY1.add( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
1783	this.selectTraceAxeY2.add( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
1784	}
1785	//si step = a 0 et autres valeurs (a faire) , retrait de la ligne Z aux parametres Y1 et y2
1786	if ($("#meanValue2").val() == 0)
1787	{
1788	this.selectTraceAxeY1.remove( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
1789	this.selectTraceAxeY2.remove( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
1790	//Selection par defaut du 1er element (pour que "Number of lines" ne soit plus selectionne par defaut si il n'existe plus)
1791	this.selectTraceAxeY1.selectFirst();
1792	this.selectTraceAxeY2.selectFirst();
1793	}
1794	},
1795
1796	onClickSelectNbCourbes: function(value)
1797	{
1798
1799	//si plusieurs courbes ou graphe choisis pour les isotopes et ou molecules, les choix pour Y2 sont inactifs
1800	if ('ca' != value)
1801	{
1802	//transformer le texte en gris
1803	document.getElementById("axeY2Titre").className = "notActiveText";
1804	document.getElementById("scaleY2Titre").className = "notActiveText";
1805	document.getElementById("typePlotY2Titre").className = "notActiveText";
1806	//pour rendre le menu dÃ©roulant inactif
1807	this.selectTraceAxeY2.disable();
1808	this.selectScaleY2.disable();
1809	this.selectTypeTraceY2.disable();
1810	}
1811	//si une seule courbe choisie pour les isotopes et ou molecules, les choix pour Y2 sont actifs
1812	if ('ca' == value)
1813	{
1814	//remet le texte en couleur active
1815	document.getElementById("axeY2Titre").className = "activeText";
1816	//rendre actif l'echelle que si l'intensite est choisie dans les parametres
1817	if (this.selectTraceAxeY2.getValue() == 'B')
1818	{
1819	document.getElementById("scaleY2Titre").className = "activeText";
1820	}
1821	//rendre actif le type de plot si ce n'est pas la valeur none qui est choisie
1822	if (this.selectTraceAxeY2.getValue() != 'no')
1823	{
1824	document.getElementById("typePlotY2Titre").className = "activeText";
1825	}
1826	//pour rendre les menu dÃ©roulant actifs
1827	this.selectTraceAxeY2.enable();
1828	//rendre actif l'echelle que si l'intensite est choisie dans les parametres
1829	if (this.selectTraceAxeY2.getValue() == 'B')
1830	{
1831	this.selectScaleY2.enable();
1832	}
1833	//rendre actif le type de plot si ce n'est pas la valeur none qui est choisie
1834	if (this.selectTraceAxeY2.getValue() != 'no')
1835	{
1836	this.selectTypeTraceY2.enable();
1837	}
1838	}
1839	},
1840
1841
1842	onClickSelectTraceAxeY1: function(value)
1843	{
1844	//si intensite n'est pas choisi pour Y1, le type d'Ã©chelle est inactif
1845	if (this.selectTraceAxeY1.getValue() != 'B')
1846	{
1847	//transformer le texte en gris
1848	document.getElementById("scaleY1Titre").className = "notActiveText";
1849	//pour rendre le menu dÃ©roulant inactif
1850	this.selectScaleY1.disable();
1851	}
1852	//si intensite est choisi pour Y1, le type d'Ã©chelle est actif
1853	if (this.selectTraceAxeY1.getValue() == 'B')
1854	{
1855	//transformer le texte en gris
1856	document.getElementById("scaleY1Titre").className = "activeText";
1857	//pour rendre le menu dÃ©roulant inactif
1858	this.selectScaleY1.enable();
1859	}
1860	},
1861
1862	onClickSelectTraceAxeY2: function(value)
1863	{
1864	//si intensite n'est pas choisi pour Y2, le type d'Ã©chelle est inactif
1865	if (this.selectTraceAxeY2.getValue() != 'B')
1866	{
1867	//transformer le texte en gris
1868	document.getElementById("scaleY2Titre").className = "notActiveText";
1869	//pour rendre le menu dÃ©roulant inactif
1870	this.selectScaleY2.disable();
1871	}
1872	//si intensite est choisi pour Y2, le type d'Ã©chelle est actif
1873	if (this.selectTraceAxeY2.getValue() == 'B')
1874	{
1875	//transformer le texte en gris
1876	document.getElementById("scaleY2Titre").className = "activeText";
1877	//pour rendre le menu dÃ©roulant inactif
1878	this.selectScaleY2.enable();
1879	}
1880	//si aucun parametre est choisi pour Y2, le type de plot est inactif
1881	if (this.selectTraceAxeY2.getValue() == 'no')
1882	{
1883	//transformer le texte en gris
1884	document.getElementById("typePlotY2Titre").className = "notActiveText";
1885	//pour rendre le menu dÃ©roulant inactif
1886	this.selectTypeTraceY2.disable();
1887	}
1888	//si un parametre est choisi pour Y2, le type de plot est actif
1889	if (this.selectTraceAxeY2.getValue() != 'no')
1890	{
1891	//transformer le texte en gris
1892	document.getElementById("typePlotY2Titre").className = "activeText";
1893	//pour rendre le menu dÃ©roulant inactif
1894	this.selectTypeTraceY2.enable();
1895	}
1896
1897	},
1898
1899	onClickSubmit: function()
1900	{
1901	this.requestGeisa();
1902	},
1903
1904	displayWindow: function(content)
1905	{
1906	//fermeture de la div de l'image d'attente
1907	this.loadingGraphics.hide();
1908
1909	// var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=' + this.nameImg + '"><button class="dataProtocolDownloadButton">Download</button></a>';
1910
1911	//alert(content);
1912	var $dialog = $( '<div></div>' )
1913
1914	.html( content )
1915
1916	.dialog( {
1917	autoOpen: false,
1918	title: "GEISA : spectroscopic database",
1919	//minHeight: 500,
1920	// minWidth: 660,
1921	height: 560,
1922	width:700,
1923	//Exemple de valeurs possible pour position : "middle", "top", [200, 100]
1924	position: "middle"
1925
1926	} );
1927	$dialog.dialog( 'open' )
1928	},
1929
1930	// displayWindow: function(coordinate)
1931	//{
1932	//var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=bib.txt"><button class="dataProtocolDownloadButton">Download</button></a>';
1933	// var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=' + this.nameImg + '"><button class="dataProtocolDownloadButton">Download</button></a>';
1934
1935	//alert(content);
1936	// var $dialog = $( '<div></div>' )
1937	// .html( content + content1 )
1938
1939	// .dialog( {
1940	// autoOpen: false,
1941	// title: "GEISA : spectroscopic database",
1942	// minHeight: 500,
1943	// minWidth: 660,
1944
1945	//coordonnee y y
1946	// position:coordinate
1947
1948	// } );
1949	// $dialog.dialog( 'open' )
1950	//},
1951
1952
1953	onClickDownload: function()
1954	{
1955	document.location.href = "project?methodName=downloadFile&fileName=bib.txt";
1956	}
1957
1958
1959	} );
1960
1961
1962	</script>
1963
1964
1965

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