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source: geisa/web/initGeisa_script.jsp @ 564

Last change on this file since 564 was 564, checked in by npipsl, 12 years ago
Modifications de l'interface demandees par ara version1
File size: 98.7 KB

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1	<%@ page import="com.ether.Controller" %>
2	<%@ page import="com.ether.IsotopeG03" %>
3	<%@ page import="com.ether.IsotopeIasiG03" %>
4	<%@ page import="com.ether.IsotopeG09" %>
5	<%@ page import="com.ether.IsotopeIasiG09" %>
6
7	<script type="text/javascript">
8
9
10
11	//permet de deselectionner la molecule quand on deselectionne un isotope (toutes les options sauf lst)
12	/*function decliquemol( name )
13	{
14
15	var inputs = document.getElementsByTagName( 'input' );
16	var count = inputs.length;
17	for( i = 0; i < count; i++ )
18	{
19	input = inputs.item( i );
20	if( input.type == 'checkbox' && input.id == (name + '-all') && input.checked == true )
21	{
22	input.checked = false;
23	}
24	}
25	} */
26
27
28	var InterfaceInit = Class.create( {
29
30	initialize: function()
31	{
32	/ ******* CONTAINERS ******* /
33	this.containerFormSpectralRangeLower = $( "#spectralRangeLower" );
34	this.containerFormSpectralRangeUpper = $( "#spectralRangeUpper" );
35	this.containerFormIntensityLower = $( "#intensityLower" );
36	this.containerFormIntensityUpper = $( "#intensityUpper" );
37	this.containerFormMeanValue1 = $( "#meanValue1" );
38	this.containerDownload = $( "#downloadContainer" );
39	this.containerLoading = $( "#loading" );
40	/ ******* VARIABLE ******* /
41	<%--this.pathImg = <%=Controller.PATH_IMAGES%>;--%>
42
43	this.initializeMolecules();
44	this.createForm();
45
46	var downloadButton = new Button( {value:"Download", parent:$( "#downloadContainer" ), id:"button_submit_2", className: "red_button", classNameText:"red_button_text", onClick:jQuery.proxy( this.onClickDownload, this )} );
47	},
48
49	initializeMolecules: function()
50	{
51	this.arrayGeisa2011 = new Array();
52	this.arrayGeisa2003 = new Array();
53	this.arrayGeisaIasi2011 = new Array();
54	this.arrayGeisaIasi2003 = new Array();
55
56	var molecule = new Object();
57	molecule.id="h2o";
58	molecule.name="H<sub>2</sub>O";
59	molecule.isotopesArray = ["161", "162", "171", "181", "182", "172"];
60	this.arrayGeisa2011.push(molecule);
61	this.arrayGeisa2003.push(molecule);
62	this.arrayGeisaIasi2011.push(molecule);
63	this.arrayGeisaIasi2003.push(molecule);
64
65	var molecule = new Object();
66	molecule.id="co2";
67	molecule.name="CO<sub>2</sub>";
68	molecule.isotopesArray = ["626", "627", "628", "636", "637", "638", "728", "828", "838"];
69	this.arrayGeisa2003.push(molecule);
70	this.arrayGeisa2011.push(molecule);
71	this.arrayGeisaIasi2011.push(molecule);
72	this.arrayGeisaIasi2003.push(molecule);
73
74	var molecule = new Object();
75	molecule.id="o3";
76	molecule.name="O<sub>3</sub>";
77	molecule.isotopesArray = ["666", "668", "686", "667", "676"];
78	this.arrayGeisa2003.push(molecule);
79	this.arrayGeisa2011.push(molecule);
80	this.arrayGeisaIasi2011.push(molecule);
81	this.arrayGeisaIasi2003.push(molecule);
82
83	var molecule = new Object();
84	molecule.id="n2o";
85	molecule.name="N<sub>2</sub>O";
86	molecule.isotopesArray = ["446", "447", "448", "456","458", "546", "548", "556"];
87	this.arrayGeisa2011.push(molecule);
88	this.arrayGeisaIasi2011.push(molecule);
89
90	var molecule = new Object();
91	molecule.id="n2o";
92	molecule.name="N<sub>2</sub>O";
93	molecule.isotopesArray = ["446", "447", "448", "456", "546"];
94	this.arrayGeisa2003.push(molecule);
95	this.arrayGeisaIasi2003.push(molecule);
96
97	var molecule = new Object();
98	molecule.id="co";
99	molecule.name="CO";
100	molecule.isotopesArray = ["26", "36", "28", "27", "38", "37"];
101	this.arrayGeisa2011.push(molecule);
102	this.arrayGeisa2003.push(molecule);
103	this.arrayGeisaIasi2011.push(molecule);
104	this.arrayGeisaIasi2003.push(molecule);
105
106	var molecule = new Object();
107	molecule.id="ch4";
108	molecule.name="CH<sub>4</sub>";
109	molecule.isotopesArray = ["211", "311"];
110	this.arrayGeisa2011.push(molecule);
111	this.arrayGeisa2003.push(molecule);
112
113	var molecule = new Object();
114	molecule.id="ch4";
115	molecule.name="CH<sub>4</sub>";
116	molecule.isotopesArray = ["211", "311", "212", "312"];
117	this.arrayGeisaIasi2011.push(molecule);
118
119	var molecule = new Object();
120	molecule.id="ch4";
121	molecule.name="CH<sub>4</sub>";
122	molecule.isotopesArray = ["211", "311", "212"];
123	this.arrayGeisaIasi2003.push(molecule);
124
125	var molecule = new Object();
126	molecule.id="o2";
127	molecule.name="O<sub>2</sub>";
128	molecule.isotopesArray = ["66", "67", "68"];
129	this.arrayGeisa2011.push(molecule);
130	this.arrayGeisa2003.push(molecule);
131
132	var molecule = new Object();
133	molecule.id="o2";
134	molecule.name="O<sub>2</sub>";
135	molecule.isotopesArray = ["66"];
136	this.arrayGeisaIasi2011.push(molecule);
137	this.arrayGeisaIasi2003.push(molecule);
138
139	var molecule = new Object();
140	molecule.id="no";
141	molecule.name="NO";
142	molecule.isotopesArray = ["46", "48", "56"];
143	this.arrayGeisa2011.push(molecule);
144	this.arrayGeisa2003.push(molecule);
145	this.arrayGeisaIasi2011.push(molecule);
146	this.arrayGeisaIasi2003.push(molecule);
147
148	var molecule = new Object();
149	molecule.id="so2";
150	molecule.name="SO<sub>2</sub>";
151	molecule.isotopesArray = ["626", "646"];
152	this.arrayGeisa2011.push(molecule);
153	this.arrayGeisa2003.push(molecule);
154	this.arrayGeisaIasi2011.push(molecule);
155	this.arrayGeisaIasi2003.push(molecule);
156
157	var molecule = new Object();
158	molecule.id="no2";
159	molecule.name="NO<sub>2</sub>";
160	molecule.isotopesArray = ["646"];
161	this.arrayGeisa2011.push(molecule);
162	this.arrayGeisa2003.push(molecule);
163	this.arrayGeisaIasi2011.push(molecule);
164	this.arrayGeisaIasi2003.push(molecule);
165
166	var molecule = new Object();
167	molecule.id="nh3";
168	molecule.name="NH<sub>3</sub>";
169	molecule.isotopesArray = ["411", "511" ];
170	this.arrayGeisa2011.push(molecule);
171	this.arrayGeisa2003.push(molecule);
172	this.arrayGeisaIasi2011.push(molecule);
173
174	var molecule = new Object();
175	molecule.id="ph3";
176	molecule.name="PH<sub>3</sub>";
177	molecule.isotopesArray = ["131" ];
178	this.arrayGeisa2011.push(molecule);
179	this.arrayGeisa2003.push(molecule);
180
181	var molecule = new Object();
182	molecule.id="hno3";
183	molecule.name="HNO<sub>3</sub>";
184	molecule.isotopesArray = ["146" ];
185	this.arrayGeisa2011.push(molecule);
186	this.arrayGeisa2003.push(molecule);
187	this.arrayGeisaIasi2011.push(molecule);
188	this.arrayGeisaIasi2003.push(molecule);
189
190	var molecule = new Object();
191	molecule.id="oh";
192	molecule.name="OH";
193	molecule.isotopesArray = ["61", "62", "81" ];
194	this.arrayGeisa2011.push(molecule);
195	this.arrayGeisa2003.push(molecule);
196
197	var molecule = new Object();
198	molecule.id="hf";
199	molecule.name="HF";
200	molecule.isotopesArray = ["19" ];
201	this.arrayGeisa2011.push(molecule);
202	this.arrayGeisa2003.push(molecule);
203
204	var molecule = new Object();
205	molecule.id="hcl";
206	molecule.name="HCL";
207	molecule.isotopesArray = ["15", "17" ];
208	this.arrayGeisa2011.push(molecule);
209	this.arrayGeisa2003.push(molecule);
210
211	var molecule = new Object();
212	molecule.id="hbr";
213	molecule.name="HBR";
214	molecule.isotopesArray = ["11", "19" ];
215	this.arrayGeisa2011.push(molecule);
216	this.arrayGeisa2003.push(molecule);
217
218	var molecule = new Object();
219	molecule.id="hi";
220	molecule.name="HI";
221	molecule.isotopesArray = ["17" ];
222	this.arrayGeisa2011.push(molecule);
223	this.arrayGeisa2003.push(molecule);
224
225	var molecule = new Object();
226	molecule.id="clo";
227	molecule.name="ClO";
228	molecule.isotopesArray = ["56", "76" ];
229	this.arrayGeisa2011.push(molecule);
230	this.arrayGeisa2003.push(molecule);
231
232	var molecule = new Object();
233	molecule.id="ocs";
234	molecule.name="OCS";
235	molecule.isotopesArray = ["622", "624", "632", "623", "822", "634"];
236	this.arrayGeisa2011.push(molecule);
237	this.arrayGeisa2003.push(molecule);
238	this.arrayGeisaIasi2011.push(molecule);
239	this.arrayGeisaIasi2003.push(molecule);
240
241	var molecule = new Object();
242	molecule.id="h2co";
243	molecule.name="H<sub>2</sub>CO";
244	molecule.isotopesArray = ["126", "128", "136"];
245	this.arrayGeisa2011.push(molecule);
246	this.arrayGeisa2003.push(molecule);
247
248	var molecule = new Object();
249	molecule.id="h2co";
250	molecule.name="H<sub>2</sub>CO";
251	molecule.isotopesArray = ["126"];
252	this.arrayGeisaIasi2011.push(molecule);
253
254	var molecule = new Object();
255	molecule.id="c2h6";
256	molecule.name="C<sub>2</sub>H<sub>6</sub>";
257	molecule.isotopesArray = ["226", "236"];
258	this.arrayGeisa2011.push(molecule);
259	this.arrayGeisa2003.push(molecule);
260
261	var molecule = new Object();
262	molecule.id="ch3d";
263	molecule.name="CH<sub>3</sub>D";
264	molecule.isotopesArray = ["212", "312"];
265	this.arrayGeisa2011.push(molecule);
266
267	var molecule = new Object();
268	molecule.id="ch3d";
269	molecule.name="CH<sub>3</sub>D";
270	molecule.isotopesArray = ["212"];
271	this.arrayGeisa2003.push(molecule);
272
273	var molecule = new Object();
274	molecule.id="c2h2";
275	molecule.name="C<sub>2</sub>H<sub>2</sub>";
276	molecule.isotopesArray = ["221", "231"];
277	this.arrayGeisa2011.push(molecule);
278	this.arrayGeisa2003.push(molecule);
279	this.arrayGeisaIasi2011.push(molecule);
280	this.arrayGeisaIasi2003.push(molecule);
281
282	var molecule = new Object();
283	molecule.id="c2h4";
284	molecule.name="C<sub>2</sub>H<sub>4</sub>";
285	molecule.isotopesArray = ["211", "311"];
286	this.arrayGeisa2011.push(molecule);
287	this.arrayGeisa2003.push(molecule);
288	this.arrayGeisaIasi2011.push(molecule);
289
290	var molecule = new Object();
291	molecule.id="geh4";
292	molecule.name="GeH<sub>4</sub>";
293	molecule.isotopesArray = ["411"];
294	this.arrayGeisa2011.push(molecule);
295	this.arrayGeisa2003.push(molecule);
296
297	var molecule = new Object();
298	molecule.id="hcn";
299	molecule.name="HCN";
300	molecule.isotopesArray = ["124", "125", "134", "224"];
301	this.arrayGeisa2011.push(molecule);
302	this.arrayGeisaIasi2011.push(molecule);
303
304	var molecule = new Object();
305	molecule.id="hcn";
306	molecule.name="HCN";
307	molecule.isotopesArray = ["124", "125", "134"];
308	this.arrayGeisa2003.push(molecule);
309
310	var molecule = new Object();
311	molecule.id="c3h8";
312	molecule.name="C<sub>3</sub>H<sub>8</sub>";
313	molecule.isotopesArray = ["221"];
314	this.arrayGeisa2011.push(molecule);
315	this.arrayGeisa2003.push(molecule);
316
317	var molecule = new Object();
318	molecule.id="c2n2";
319	molecule.name="C<sub>2</sub>N<sub>2</sub>";
320	molecule.isotopesArray = ["224"];
321	this.arrayGeisa2011.push(molecule);
322	this.arrayGeisa2003.push(molecule);
323
324	var molecule = new Object();
325	molecule.id="c4h2";
326	molecule.name="C<sub>4</sub>H<sub>2</sub>";
327	molecule.isotopesArray = ["211"];
328	this.arrayGeisa2011.push(molecule);
329	this.arrayGeisa2003.push(molecule);
330
331	var molecule = new Object();
332	molecule.id="hc3n";
333	molecule.name="HC<sub>3</sub>N";
334	molecule.isotopesArray = ["124"];
335	this.arrayGeisa2011.push(molecule);
336	this.arrayGeisa2003.push(molecule);
337
338	var molecule = new Object();
339	molecule.id="hocl";
340	molecule.name="HOCl";
341	molecule.isotopesArray = ["165", "167"];
342	this.arrayGeisa2011.push(molecule);
343	this.arrayGeisa2003.push(molecule);
344
345	var molecule = new Object();
346	molecule.id="n2";
347	molecule.name="N<sub>2</sub>";
348	molecule.isotopesArray = ["44"];
349	this.arrayGeisa2011.push(molecule);
350	this.arrayGeisa2003.push(molecule);
351	this.arrayGeisaIasi2011.push(molecule);
352	this.arrayGeisaIasi2003.push(molecule);
353
354	var molecule = new Object();
355	molecule.id="ch3cl";
356	molecule.name="CH<sub>3</sub>Cl";
357	molecule.isotopesArray = ["215", "217"];
358	this.arrayGeisa2011.push(molecule);
359	this.arrayGeisa2003.push(molecule);
360
361	var molecule = new Object();
362	molecule.id="h2o2";
363	molecule.name="H<sub>2</sub>O<sub>2</sub>";
364	molecule.isotopesArray = ["166"];
365	this.arrayGeisa2011.push(molecule);
366	this.arrayGeisa2003.push(molecule);
367
368	var molecule = new Object();
369	molecule.id="h2s";
370	molecule.name="H<sub>2</sub>S";
371	molecule.isotopesArray = ["121", "141", "131"];
372	this.arrayGeisa2011.push(molecule);
373	this.arrayGeisa2003.push(molecule);
374
375	var molecule = new Object();
376	molecule.id="hcooh";
377	molecule.name="HCOOH";
378	molecule.isotopesArray = ["261"];
379	this.arrayGeisa2011.push(molecule);
380	this.arrayGeisa2003.push(molecule);
381	this.arrayGeisaIasi2011.push(molecule);
382
383	var molecule = new Object();
384	molecule.id="cof2";
385	molecule.name="COF<sub>2</sub>";
386	molecule.isotopesArray = ["269"];
387	this.arrayGeisa2011.push(molecule);
388	this.arrayGeisa2003.push(molecule);
389
390	var molecule = new Object();
391	molecule.id="sf6";
392	molecule.name="SF<sub>6</sub>";
393	molecule.isotopesArray = ["29"];
394	this.arrayGeisa2011.push(molecule);
395	this.arrayGeisa2003.push(molecule);
396
397	var molecule = new Object();
398	molecule.id="c3h4";
399	molecule.name="C<sub>3</sub>H<sub>4</sub>";
400	molecule.isotopesArray = ["341"];
401	this.arrayGeisa2011.push(molecule);
402	this.arrayGeisa2003.push(molecule);
403
404	var molecule = new Object();
405	molecule.id="ho2";
406	molecule.name="HO<sub>2</sub>";
407	molecule.isotopesArray = ["166"];
408	this.arrayGeisa2011.push(molecule);
409	this.arrayGeisa2003.push(molecule);
410
411	var molecule = new Object();
412	molecule.id="clono2";
413	molecule.name="ClONO<sub>2</sub>";
414	molecule.isotopesArray = ["564", "764"];
415	this.arrayGeisa2011.push(molecule);
416	this.arrayGeisa2003.push(molecule);
417
418	var molecule = new Object();
419	molecule.id="ch3br";
420	molecule.name="CH<sub>3</sub>Br";
421	molecule.isotopesArray = ["79", "81"];
422	this.arrayGeisa2011.push(molecule);
423
424	var molecule = new Object();
425	molecule.id="ch3oh";
426	molecule.name="CH<sub>3</sub>OH";
427	molecule.isotopesArray = ["216"];
428	this.arrayGeisa2011.push(molecule);
429	this.arrayGeisaIasi2011.push(molecule);
430
431	var molecule = new Object();
432	molecule.id="noplus";
433	molecule.name="NO<sup>+</sup>";
434	molecule.isotopesArray = ["46"];
435	this.arrayGeisa2011.push(molecule);
436
437	var molecule = new Object();
438	molecule.id="hnc";
439	molecule.name="HNC";
440	molecule.isotopesArray = ["142"];
441	this.arrayGeisa2011.push(molecule);
442
443	var molecule = new Object();
444	molecule.id="c6h6";
445	molecule.name="C<sub>6</sub>H<sub>6</sub>";
446	molecule.isotopesArray = ["266"];
447	this.arrayGeisa2011.push(molecule);
448
449	var molecule = new Object();
450	molecule.id="c2hd";
451	molecule.name="C<sub>2</sub>HD";
452	molecule.isotopesArray = ["122"];
453	this.arrayGeisa2011.push(molecule);
454
455	var molecule = new Object();
456	molecule.id="cf4";
457	molecule.name="CF<sub>4</sub>";
458	molecule.isotopesArray = ["291"];
459	this.arrayGeisa2011.push(molecule);
460
461	var molecule = new Object();
462	molecule.id="ch3cn";
463	molecule.name="CH<sub>3</sub>CN";
464	molecule.isotopesArray = ["234"];
465	this.arrayGeisa2011.push(molecule);
466
467
468	},
469
470	// CREATES ********************************************************
471	createForm: function()
472	{
473	//Titre de la page
474	var titlePage = document.createTextNode("Graphic vizualisation of the GEISA database");
475	document.getElementById("titlePage").appendChild(titlePage);
476
477	// Create menu deroulant choix de la base
478	var paramDatabase = new Object();
479	paramDatabase.id = "selectDatabase";
480	paramDatabase.parent = $("#database1");
481	this.selectDatabase = new Select( paramDatabase );
482	this.selectDatabase.add( 'GEISA2011', "GEISA 2011", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeG09.class%>' );
483	this.selectDatabase.add( 'GEISAIASI2011', "GEISA-IASI 2011", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeIasiG09.class%>' );
484	this.selectDatabase.add( 'GEISA2003', "GEISA 2003", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeG03.class%>' );
485	this.selectDatabase.add( 'GEISAIASI2003', "GEISA-IASI 2003", jQuery.proxy(this.onClickSelectDatabase, this), '<%=IsotopeIasiG03.class%>' );
486	this.selectDatabase.selectFirst( false );
487
488
489	this.createMolecules($('#BDD-GEISA2011'), this.arrayGeisa2011, "GEISA2011");
490	this.createMolecules($('#BDD-GEISA2003'), this.arrayGeisa2003, "GEISA2003");
491	this.createMolecules($('#BDD-GEISAIASI2011'), this.arrayGeisaIasi2011, "GEISAIASI2011");
492	this.createMolecules($('#BDD-GEISAIASI2003'), this.arrayGeisaIasi2003, "GEISAIASI2003");
493
494
495	//Zone texte SpectralRange
496	//Titre gÃ©nÃ©ral (qui changera en fonction de la base geisa choisie)
497	document.getElementById('spectralRangeTitre').innerHTML = "";
498	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
499
500	//Titre
501	//var titleSpectralRangeLower = document.createTextNode("Upper Bound :");
502	// document.getElementById("spectralRangeLower").appendChild(titleSpectralRangeLower);
503	document.getElementById("spectralRangeLower").innerHTML = "Lower value, cm<sup>-1</sup> : ";
504	//var titleSpectralRangeUpper = document.createTextNode("Upper Bound :");
505	// document.getElementById("spectralRangeUpper").appendChild(titleSpectralRangeUpper);
506	document.getElementById("spectralRangeUpper").innerHTML = "Upper value, cm<sup>-1</sup> : ";
507	//zone texte SpectralRangeLower
508	var inputSpectralRangeLower = $( document.createElement( "input" ) );
509	inputSpectralRangeLower.attr( {id:"RangeLower", class:"styleInputs"} );
510	inputSpectralRangeLower.val(0);
511	//pour mettre Ã jour le menu dÃ©roulant des transitions
512	inputSpectralRangeLower.bind( 'blur', this, jQuery.proxy( this.requestTransition, this ));
513	this.containerFormSpectralRangeLower.append( inputSpectralRangeLower );
514	//zone texte SpectralRangeUpper
515	var inputSpectralRangeUpper = $( document.createElement( "input" ) );
516	inputSpectralRangeUpper.attr( {id:"RangeUpper"} );
517	inputSpectralRangeUpper.val(35877.030506);
518	//pour mettre Ã jour le menu dÃ©roulant des transitions lorsque l'on change la valeur du spectral range
519	inputSpectralRangeUpper.bind( 'blur', this, jQuery.proxy( this.requestTransition, this ));
520	this.containerFormSpectralRangeUpper.append( inputSpectralRangeUpper );
521
522
523	//Zone texte Intensity
524	//Titre
525	//var titleIntensityLower = document.createTextNode("Lower Bound :");
526	//document.getElementById("intensityLower").appendChild(titleIntensityLower);
527	//var titleIntensityUpper = document.createTextNode("Upper Bound :");
528	//document.getElementById("intensityUpper").appendChild(titleIntensityUpper);
529	document.getElementById("intensityLower").innerHTML = "Lower value, cm/mol. : "
530	document.getElementById("intensityUpper").innerHTML = "Upper value, cm/mol. : "
531
532	//zone texte IntensityLower
533	var inputIntensityLower = $( document.createElement( "input" ) );
534	inputIntensityLower.attr( {id:"intensityLo", class:"styleInputs"} );
535	inputIntensityLower.val(0);
536	this.containerFormIntensityLower.append( inputIntensityLower );
537	//zone texte IntensityUpper
538	var inputIntensityUpper = $( document.createElement( "input" ) );
539	inputIntensityUpper.attr( {id:"intensityUp"} );
540	inputIntensityUpper.val(1e-16);
541	this.containerFormIntensityUpper.append( inputIntensityUpper );
542
543
544	// Create menu deroulant 1er choix axe des y
545	//Titre
546	var titleAxeY1 = document.createTextNode("Select parameter (left Y-axis)");
547	document.getElementById("axeY1").appendChild(titleAxeY1);
548	var spaceBr = document.createElement ("br");
549	document.getElementById("axeY1").appendChild(spaceBr);
550	//menu dÃ©roulant
551	var paramSelectAxeY1 = new Object();
552	paramSelectAxeY1.id = "selectAxeY1";
553	paramSelectAxeY1.parent = $("#axeY1");
554	this.selectTraceAxeY1 = new Select( paramSelectAxeY1 );
555	this.selectTraceAxeY1.add( 'B', "Intensity", jQuery.proxy(this.onClickSelectTraceAxeY1, this ));
556	this.selectTraceAxeY1.add( 'C', "Air broadening pressure halfwidth", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
557	this.selectTraceAxeY1.add( 'D', "Energy of the lower transition level", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
558	this.selectTraceAxeY1.add( 'F', "Temperature dependence coefficient n of the air broadening halfwidth ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
559	this.selectTraceAxeY1.add( 'N', "Self broadening pressure halfwidth (HWHM)", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
560	this.selectTraceAxeY1.add( 'O', "Air pressure shift of the line transition", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
561	this.selectTraceAxeY1.add( 'R', "Temperature dependence coefficient of the air pressure shift ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
562	this.selectTraceAxeY1.selectFirst( false );
563
564
565	// Create menu deroulant type de graphe
566	//Titre
567	var titleTypeTrace = document.createTextNode("Type of graph");
568	document.getElementById("NbCourbes").appendChild(titleTypeTrace);
569	var spaceBr = document.createElement ("br");
570	document.getElementById("NbCourbes").appendChild(spaceBr);
571	//menu dÃ©roulant
572	var paramNbCourbes = new Object();
573	paramNbCourbes.id = "SelectNbCourbes";
574	paramNbCourbes.parent = $("#NbCourbes");
575	this.SelectNbCourbes = new Select( paramNbCourbes );
576	this.SelectNbCourbes.add( 'ca', "One curve for all selection", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
577	this.SelectNbCourbes.add( 'cm', "One curve for each molecule selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
578	this.SelectNbCourbes.add( 'ci', "One curve for each isotopologue selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
579	this.SelectNbCourbes.add( 'gm', "One graph for each molecule selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
580	this.SelectNbCourbes.add( 'gi', "One graph for each isotopologue selected", jQuery.proxy(this.onClickSelectNbCourbes, this ) );
581	this.SelectNbCourbes.selectFirst( false );
582
583
584
585
586	// Create menu deroulant type d'Ã©chelle linÃ©aire ou logarithmique pour le choix y1
587	//Titre
588	var titleScaleY1 = document.createTextNode("Select the type of Scale (if intensity is choosen)");
589	document.getElementById("scaleY1Titre").appendChild(titleScaleY1);
590	//menu dÃ©roulant
591	var paramSelectScaleY1 = new Object();
592	paramSelectScaleY1.id = "SelectScaleY1";
593	paramSelectScaleY1.parent = $("#scaleY1");
594	this.selectScaleY1 = new Select( paramSelectScaleY1 );
595	this.selectScaleY1.add( 'l', "Linear" );
596	this.selectScaleY1.add( '-log_scale', "Logarithmic" );
597	this.selectScaleY1.selectFirst( false );
598
599	// Create menu deroulant style de tracer Y1
600	//Titre
601	var titleTypeTrace = document.createTextNode("Select the type of plot");
602	document.getElementById("typePlotY1").appendChild(titleTypeTrace);
603	var spaceBr = document.createElement ("br");
604	document.getElementById("typePlotY1").appendChild(spaceBr);
605	//menu dÃ©roulant
606	var paramSelectTypeTraceY1 = new Object();
607	paramSelectTypeTraceY1.id = "SelectTypePlotY1";
608	paramSelectTypeTraceY1.parent = $("#typePlotY1");
609	this.selectTypeTraceY1 = new Select( paramSelectTypeTraceY1 );
610	this.selectTypeTraceY1.add( 'l', "Lines" );
611	this.selectTypeTraceY1.add( 'p', "Dots" );
612	this.selectTypeTraceY1.add( 'i', "Peaks" );
613	this.selectTypeTraceY1.add( 'lp', "Lines and Dots" );
614	this.selectTypeTraceY1.selectFirst( false );
615
616	// Show/Hide advanced options
617	// document.getElementById('showAdvancedOptions').innerHTML = "";
618	// document.getElementById('showAdvancedOptions').innerHTML = "Show advanced options";
619
620
621	var showHide = document.createElement('a');
622	showHide.setAttribute('href',jQuery.proxy( this.onClickShowAdvancedOptions, this ));
623	showHide.setAttribute('title',"caption");
624	showHide.innerHTML="Show advanced options";
625	document.getElementById('showAdvancedOptions').appendChild(showHide);
626
627	// var showHide = $( document.createElement( "a" ) );
628	// showHide.attr( {href:"url", title:"caption", } );
629	// showHide.innerHTML= "Show advanced options";
630	//showHide.bind( 'click', this, jQuery.proxy( this.onClickShowAdvancedOptions, this ));
631	// $("#showAdvancedOptions").append( showHide );
632
633
634
635
636
637	//titre menu deroulant transition upper
638	var titleTransitionUpper = document.createTextNode("Upper state : ");
639	document.getElementById("transitionUpper").appendChild(titleTransitionUpper);
640
641
642	// Create menu deroulant transition upper
643	// var paramSelectTransitionUpper = new Object();
644	// paramSelectTransitionUpper.id = "transition1";
645	// paramSelectTransitionUpper.parent = $("#transitionUpper");
646	// this.selectTransitionUpper = new Select( paramSelectTransitionUpper );
647	// this.selectTransitionUpper.add( '-1', "Select a molecule" );
648	// this.selectTransitionUpper.selectFirst( false );
649
650	this.selectTransitionUpper = $( document.createElement( "select" ) );
651	this.selectTransitionUpper.attr( {id:"transition1"} );
652	var optTransitionUpper = $( document.createElement( "option" ) );
653	optTransitionUpper.attr( {value:"-1", text:"Select a molecule"} );
654	//var transitionsLower ="000";
655	// opt2.bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
656	this.selectTransitionUpper.append(optTransitionUpper);
657	$("#transitionUpper").append(this.selectTransitionUpper);
658
659
660	//titre menu deroulant transition lower
661	var titleTransitionLower = document.createTextNode("Lower state : ");
662	document.getElementById("transitionLower").appendChild(titleTransitionLower);
663
664	// Create menu deroulant transition lower
665	// var paramSelectTransitionLower = new Object();
666	// paramSelectTransitionLower.id = "transition2";
667	// paramSelectTransitionLower.parent = $("#transitionLower");
668	// this.selectTransitionLower = new Select( paramSelectTransitionLower );
669	// this.selectTransitionLower.add( '-1', "Select a molecule");
670	// this.selectTransitionLower.selectFirst( false );
671	this.selectTransitionLower = $( document.createElement( "select" ) );
672	this.selectTransitionLower.attr( {id:"transition2"} );
673	var optTransitionLower = $( document.createElement( "option" ) );
674	optTransitionLower.attr( {value:"-1", text:"Select a molecule"} );
675	this.selectTransitionLower.append(optTransitionLower);
676	$("#transitionLower").append(this.selectTransitionLower);
677
678	//bouton reset pour les transition
679	var resetButton = new Button( {value:"Reset", parent:$( "#transitionReset" ), id:"buttonReset", className: "gray_button", onClick:jQuery.proxy( this.requestTransition, this )} );
680
681
682	// //menu dÃ©roulant js en javascript sans passer par le modele
683	// var select = document.createElement('select');
684	// select.id = "transiEssai";
685	// select.name ="transiEssai";
686	//
687	// var opt = document.createElement('option');
688	// opt.setAttribute('value','id1');
689	// var theText = document.createTextNode("id1");
690	// opt.appendChild(theText);
691	// select.appendChild(opt);
692	//
693	// var opt = document.createElement('option');
694	// opt.setAttribute('value','id2');
695	// var theText = document.createTextNode("id2");
696	// opt.appendChild(theText);
697	//
698	// //opt.onclick=jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]);
699	// select.appendChild(opt);
700	// document.getElementById("transitionLower").appendChild(select);
701
702
703	//menu dÃ©roulant en jquery sans passer par le modele
704	// this.select2 = $( document.createElement( "select" ) );
705	// this.select2.attr( {id:"transiEssai2", name:"transiEssai2"} );
706	// var opt2 = $( document.createElement( "option" ) );
707	// opt2.attr( {value:"id3", text:"zzz"} );
708	// //var transitionsLower ="000";
709	// // opt2.bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
710	// this.select2.append(opt2);
711	// $("#transitionLower").append(this.select2);
712
713
714
715
716	//Zone text Mean Value
717	//Titre
718	var titleMeanValue = document.createTextNode("Step : ");
719	document.getElementById("meanValue1").appendChild(titleMeanValue);
720	//champ input
721	var inputMeanValue = $( document.createElement( "input" ) );
722	inputMeanValue.attr( {id:"meanValue2"} );
723	inputMeanValue.val(0);
724	this.containerFormMeanValue1.append( inputMeanValue );
725	inputMeanValue.bind( 'blur', this, jQuery.proxy( this.onBlurInputMeanValue, this ));
726
727
728	// Create menu deroulant 2eme choix axe des y
729	//Titre
730	var titleAxeY2 = document.createTextNode("Select secondary parameter (right Y-axis)");
731	document.getElementById("axeY2Titre").appendChild(titleAxeY2);
732	//menu dÃ©roulant
733	var paramSelectAxeY2 = new Object();
734	paramSelectAxeY2.id = "selectAxeY2";
735	paramSelectAxeY2.parent = $("#axeY2");
736	this.selectTraceAxeY2 = new Select( paramSelectAxeY2 );
737	this.selectTraceAxeY2.add( 'no', "None", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
738	this.selectTraceAxeY2.add( 'B', "Intensity", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
739	this.selectTraceAxeY2.add( 'C', "Air broadening pressure halfwidth", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
740	this.selectTraceAxeY2.add( 'D', "Energy of the lower transition level", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
741	this.selectTraceAxeY2.add( 'F', "Temperature dependence coefficient n of the air broadening halfwidth ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
742	this.selectTraceAxeY2.add( 'N', "Self broadening pressure halfwidth (HWHM)", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
743	this.selectTraceAxeY2.add( 'O', "Air pressure shift of the line transition", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
744	this.selectTraceAxeY2.add( 'R', "Temperature dependence coefficient of the air pressure shift ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
745	this.selectTraceAxeY2.selectFirst( false );
746
747	// Create menu deroulant type d'Ã©chelle linÃ©aire ou logarithmique pour le choix y2
748	//Titre
749	var titleScaleY2 = document.createTextNode("Select the type of Scale (if intensity is choosen)");
750	document.getElementById("scaleY2Titre").appendChild(titleScaleY2);
751	//menu dÃ©roulant
752	var paramSelectScaleY2 = new Object();
753	paramSelectScaleY2.id = "SelectScaleY2";
754	paramSelectScaleY2.parent = $("#scaleY2");
755	this.selectScaleY2 = new Select( paramSelectScaleY2 );
756	this.selectScaleY2.add( 'l', "Linear" );
757	this.selectScaleY2.add( '-log_scale2', "Logarithmic" );
758	this.selectScaleY2.selectFirst( false );
759	//est inactif par defaut car selectTraceAxeY2 est positionne a none par defaut
760	document.getElementById("scaleY2Titre").className = "notActiveText";
761	this.selectScaleY2.disable();
762
763	// Create menu deroulant style de tracer Y2
764	//Titre
765	var titleTypeTrace = document.createTextNode("Select the type of plot");
766	document.getElementById("typePlotY2Titre").appendChild(titleTypeTrace);
767	//menu dÃ©roulant
768	var paramSelectTypeTraceY2 = new Object();
769	paramSelectTypeTraceY2.id = "SelectTypePlotY2";
770	paramSelectTypeTraceY2.parent = $("#typePlotY2");
771	this.selectTypeTraceY2 = new Select( paramSelectTypeTraceY2 );
772	this.selectTypeTraceY2.add( 'l', "Lines" );
773	this.selectTypeTraceY2.add( 'p', "Dots" );
774	this.selectTypeTraceY2.add( 'i', "Peaks" );
775	this.selectTypeTraceY2.add( 'lp', "Lines and Dots" );
776	this.selectTypeTraceY2.selectFirst( false );
777	//est inactif par defaut car selectTraceAxeY2 est positionne a none par defaut
778	document.getElementById("typePlotY2Titre").className = "notActiveText";
779	this.selectTypeTraceY2.disable();
780
781
782
783
784	//crÃ©ation de l'image d'attente
785	var param = new Object();
786	param.id = "loadingForGraphics";
787	param.parent = this.containerLoading;
788	this.loadingGraphics = new Loading( param );
789	// this.loadingGraphics.display();
790	//this.loadingGraphics.hide();
791
792
793	// var submitButton = new Button( {value:"Submit", parent:$( "#boutonSubmit" ), id:"button_submit_3", className: "red_button", classNameText:"red_button_text", onClick:jQuery.proxy( this.onClickSubmit, this )} );
794	var submitButton = new Button( {value:"Submit", parent:$( "#boutonSubmit" ), id:"button_submit_3", className: "positive", onClick:jQuery.proxy( this.onClickSubmit, this )} );
795	},
796
797
798
799
800	/**
801	* This method creates the case to check for the moles
802	* create cases Ã cocher pour les molÃ©cules
803	* @param container
804	* @param moleculesArray
805	*/
806	//createMolecules: function(container, moleculesArray)
807	createMolecules: function(container, moleculesArray, BddVersion)
808	{
809	var table = $(document.createElement("table"));
810	container.append(table);
811	// var tr = $(document.createElement("tr"));
812	// tr.attr({valign: "top"});
813	// table.append(tr);
814	var i=0;
815	//nombre de molecules par ligne
816	var l=10;
817	//taille du tableau
818	//alert("l" +moleculesArray.length);
819	// parseInt : partie entiÃšre
820	// var res = parseInt(8/3);
821	//alert("res="+res);
822
823	$.each(moleculesArray, jQuery.proxy( function(index, moleculeElement )
824	{
825
826
827	//this.tr et non var tr pour que tr existe encore Ã la sortie du if
828	if ( index == (i*l))
829	{
830	//alert(index);
831	this.tr = $(document.createElement("tr"));
832	this.tr.attr({valign: "top"});
833	table.append(this.tr);
834	i=i+1;
835
836	}
837	var td = $(document.createElement("td"));
838	this.tr.append(td);
839
840	var span= $(document.createElement("span"));
841	span.addClass("molecule");
842	td.append(span);
843
844	var input = $(document.createElement("input"));
845	input.attr({type:"checkbox", id:"all-"+moleculeElement.id+"-"+BddVersion});
846	input.bind( 'click', this, jQuery.proxy( this.cliquetout, [this, moleculeElement.id, BddVersion ] ));
847	span.append(input);
848
849	var a = $(document.createElement("a"));
850	a.html("<b>"+moleculeElement.name+"</b>");
851
852	a.bind( 'click', this, jQuery.proxy( this.visibilite, [this,"Cache-"+ moleculeElement.id] ));
853	span.append(a);
854
855	var div= $(document.createElement("div"));
856	div.addClass("divViolet");
857	div.attr({id:"Cache-"+moleculeElement.id, style: "display:none"});
858	td.append(div);
859
860	var spanIsotopes= $(document.createElement("span"));
861	spanIsotopes.addClass("isotope");
862	spanIsotopes.attr({id:moleculeElement.id+"Isotope"+BddVersion});
863	div.append(spanIsotopes);
864
865
866	this.createIsotopes($("#"+moleculeElement.id+"Isotope"+BddVersion), moleculeElement.isotopesArray, moleculeElement.id, BddVersion);
867
868
869	}, this) );
870
871
872	},
873
874	createIsotopes: function(container, isotopesArray, moleculeElement, BddVersion )
875	{
876
877
878	$.each(isotopesArray, jQuery.proxy( function( index, isotopeElement )
879	{
880	container.append("   ");
881	var inputIsotopes = $(document.createElement("input"));
882	inputIsotopes.attr({type:"checkbox", id:"chk-"+moleculeElement+"_"+isotopeElement+"-"+BddVersion, name:"moles", value:moleculeElement+"_"+isotopeElement});
883	inputIsotopes.bind( 'click', this, jQuery.proxy( this.cliqueIsotope, [this, moleculeElement+"_"+isotopeElement, moleculeElement, BddVersion ] ));
884	container.append(inputIsotopes);
885	container.append(isotopeElement);
886	var br = $(document.createElement("br"));
887	container.append(br);
888
889	}, this) );
890	},
891
892	// <table><tr><td>
893	// <span class="molecule"><input type=checkbox id=all-ch3cn-GEISA2011 onclick="cliquetout('this, ch3cn, GEISA2011');">
894	// <a href="javascript:visibilite('this, Cache-ch3cn');"><B>CH<sub>3</sub>CN</a></B>
895	// </span>
896	// <div class="divViolet" id="Cache-ch3cn" style="display:none;">
897	// <span class="isotope" id="ch3cnIsotopeGEISA2011">   <input type=checkbox id=chk-ch3cn_234-GEISA2011 name=moles value=ch3cn_234 onclick="cliqueIsotope('this, ch3cn_234, GEISA2011');">234<br></span>
898	// </div>
899	// </td></tr></table>
900
901	// REQUESTS ********************************************************
902	//rÃ©cupÃ©ration de toutes les valeurs choisies par l'utilisateur et transformation de ces valeurs pour les inclure dans la requÃªte fortran
903	requestGeisa: function()
904	{
905
906	//on va chercher les chemin dÃ©clarÃ© dans le controller
907	this.pathProcess = "<%=Controller.PATH_PROCESS%>";
908	this.LongPathImages = "<%=Controller.LONG_PATH_IMAGES%>";
909
910
911
912	//sÃ©lection du fichier binaire de la base geisa sÃ©lectionnÃ©e
913	var paramBase = "";
914	switch (this.selectDatabase.getValue()) {
915	case 'GEISA2003':
916	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISA2003_asc_gs03_v1.0 -input_format asc -database_name GEISA2003 -database_type gs03";
917	break;
918	case 'GEISA2011':
919	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISA2009_bin -database_name GEISA2011 -database_type gs08";
920	break;
921	case 'GEISAIASI2003':
922	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISAIASI2003_asc_gsi03_v1.0 -input_format asc -database_name GEISAIASI2003 -database_type gsi03";
923	break;
924	case 'GEISAIASI2011':
925	paramBase = " -dirin "+this.pathProcess+" -dirout "+this.LongPathImages+" -filein "+this.pathProcess+"line_GEISAIASI2011_bin_gsi08_v1.0 -database_name GEISAIASI2011 -database_type gsi08";
926	break;
927	}
928
929
930	//molÃ©cules
931	//rÃ©cupÃ©ration des molÃ©cules sÃ©lectionnÃ©es
932	var inputs = document.getElementsByTagName( 'input' );
933	var count = inputs.length;
934	var isotopesSelectedName ="";
935	// alert(this.selectDatabase.getValue());
936	var i=0;
937	this.nbIsotopes = 0;
938	this.nbMolecules = 0;
939	this.nbGraph = 0;
940	for( i = 0; i < count; i++ )
941	{
942	var input = inputs.item( i );
943	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
944	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
945	{
946	//nombre d'isotopes sÃ©lectionnÃ©s
947	this.nbIsotopes = this.nbIsotopes + 1;
948
949	var molN=input.value;
950	var molN1=molN.replace("_", ":");
951	// exemple : -moleisot h2o:161 -moleisot h2o:162 -moleisot co2:626 -moleisot co2:627 -moleisot o3:666 -moleisot o3:668
952	isotopesSelectedName = isotopesSelectedName+"-moleisot "+molN1+" ";
953	}
954	//rÃ©cupÃ©ration du nombre de molÃ©cules sÃ©lectionnÃ©es
955	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("all-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
956	{
957	//nombre d'isotopes sÃ©lectionnÃ©s
958	this.nbMolecules = this.nbMolecules + 1;
959	}
960	}
961
962
963	//averti l'utilisateur qu'il faut au moins sÃ©lectionner un isotope
964	if (this.nbIsotopes == 0) {
965	alert("Error : no molecule or isotopoloque was selected");
966	return;
967	}
968
969
970
971	//sÃ©lection du nombre de courbes ou de graphs
972
973	var nbCourbes = "";
974	switch (this.SelectNbCourbes.getValue()) {
975	case 'cm':
976	nbCourbes = "-separate_mol -same_graph ";
977	this.nbGraph = 1;
978	this.nbCourbe = this.nbMolecules;
979	if (this.nbCourbe > 8) {
980	alert("Too much molecules selected to draw one curve for each molecule selected");
981	return;
982	}
983	break;
984	case 'ci':
985	nbCourbes = "-separate_iso -same_graph ";
986	this.nbGraph = 1;
987	this.nbCourbe = this.nbIsotopes;
988	if (this.nbCourbe > 8) {
989	alert("Too much isotopologues selected to draw one curve for each isotopologues selected");
990	return;
991	}
992	break;
993	case 'gm':
994	nbCourbes = "-separate_mol ";
995	this.nbGraph = this.nbMolecules;
996	if (this.nbGraph > 20) {
997	alert("Too much molecules selected to draw one graph for each molecules selected");
998	return;
999	}
1000	break;
1001	case 'gi':
1002	nbCourbes = "-separate_iso ";
1003	this.nbGraph = this.nbIsotopes;
1004	if (this.nbGraph > 20) {
1005	alert("Too much isotopologues selected to draw one graph for each isotopologues selected");
1006	return;
1007	}
1008	break;
1009	default:
1010	nbCourbes = "";
1011	this.nbGraph = 1;
1012	break;
1013	}
1014
1015
1016	//Spectral range
1017	var rangeLower="-wavenb_min "+$("#RangeLower").val();
1018	var rangeUpper="-wavenb_max "+$("#RangeUpper").val();
1019
1020	//controle des valeurs entrÃ©es par l'utilisateur
1021
1022	switch (this.selectDatabase.getValue()) {
1023	case 'GEISA2003':
1024	//isNaN = n'est pas un nombre
1025	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) > 35877.030506)
1026	{
1027	alert("Error: Invalid value for lower spectral range area");
1028	return;
1029	}
1030
1031	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) > 35877.030506)
1032	{
1033	alert("Error: Invalid value for upper spectral range area");
1034	return;
1035	}
1036	break;
1037	case 'GEISA2011':
1038	//isNaN = n'est pas un nombre
1039	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) > 35877.030506)
1040	{
1041	alert("Error: Invalid value for lower spectral range area");
1042	return;
1043	}
1044
1045	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) > 35877.030506)
1046	{
1047	alert("Error: Invalid value for upper spectral range area");
1048	return;
1049	}
1050	break;
1051	case 'GEISAIASI2003':
1052	//isNaN = n'est pas un nombre
1053	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) < 599.000793 \|\| parseInt($("#RangeLower").val()) > 3000.998767)
1054	{
1055	alert("Error: Invalid value for lower spectral range area");
1056	return;
1057	}
1058
1059	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) < 599.000793 \|\| parseInt($("#RangeUpper").val()) > 3000.998767)
1060	{
1061	alert("Error: Invalid value for upper spectral range area");
1062	return;
1063	}
1064	break;
1065	case 'GEISAIASI2011':
1066	//isNaN = n'est pas un nombre
1067	if(isNaN($("#RangeLower").val()) == true \|\| parseInt($("#RangeLower").val()) < 0 \|\| parseInt($("#RangeLower").val()) < 599.000793 \|\| parseInt($("#RangeLower").val()) > 3000.998767)
1068	{
1069	alert("Error: Invalid value for lower spectral range area");
1070	return;
1071	}
1072
1073	if(isNaN($("#RangeUpper").val()) == true \|\| parseInt( $("#RangeUpper").val()) == 0 \|\| parseInt( $("#RangeUpper").val()) < 0 \|\| parseInt($("#RangeUpper").val()) < 599.000793 \|\| parseInt($("#RangeUpper").val()) > 3000.998767)
1074	{
1075	alert("Error: Invalid value for upper spectral range area");
1076	return;
1077	}
1078	break;
1079	}
1080
1081
1082	if ($("#RangeLower").val() == "" )
1083	{
1084	rangeLower="";
1085	}
1086
1087	if ($("#RangeUpper").val() == "" )
1088	{
1089	rangeUpper="";
1090	}
1091	if( parseInt($("#RangeLower").val()) > parseInt($("#RangeUpper").val()) )
1092	{
1093	alert("Error: lower spectral range area is superior to upper spectral range area ");
1094	return;
1095	}
1096
1097
1098	//Transitions to do
1099	//exemple de requete avec transition
1100	//./all -filein line_GEISA2009_bin -moleisot h2o:161 -wavenb_min 1 -wavenb_max 1000 -database_name "GEISA2011" -vib_ident_lower '[000]'
1101	//var TransitionUpper ="-vib_ident_upper '[ "+this.selectTransitionUpper.getValue()+" ]'";
1102	var transitionUpper=document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value;
1103	//Enlever les espaces blancs
1104	// TransitionUp= TransitionUp.replace(/ /g,"");
1105	//var TransitionUpper ="-vib_ident_upper ["+TransitionUp+"]";
1106	// var transitionUpper = "["+transitionUp+"]";
1107	// alert ("transitionUpper"+transitionUpper);
1108
1109	// var TransitionLower ="-vib_ident_lower '[ "+this.selectTransitionLower.getValue()+" ]'";
1110	var transitionLower=document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value;
1111	// TransitionLo= TransitionLo.replace(/ /g,"");
1112	// var TransitionLower ="-vib_ident_lower ["+TransitionLo+"]";
1113	//var transitionLower ="["+transitionLo+"]";
1114
1115	//pas de transition sÃ©lectionnÃ©e
1116	// if (( this.selectTransitionUpper.getValue()== -1) \|\| (this.selectTransitionUpper.getValue() == "transition" ))
1117	// {
1118	// TransitionUpper ="";
1119	// }
1120	// if (( this.selectTransitionLower.getValue()== -1) \|\| (this.selectTransitionLower.getValue() == "transition" ))
1121	// {
1122	// TransitionLower ="";
1123	// }
1124	if (( document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == -1) \|\| (document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == "transition" ))
1125	{
1126	transitionUpper ="no";
1127	}
1128	if (( document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == -1) \|\| (document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == "transition" ))
1129	{
1130	transitionLower ="no";
1131	}
1132
1133	if ( document.getElementById('transition1').options[document.getElementById('transition1').selectedIndex].value == "")
1134	{
1135	transitionUpper ="noValue";
1136	}
1137
1138	if ( document.getElementById('transition2').options[document.getElementById('transition2').selectedIndex].value == "")
1139	{
1140	transitionLower ="noValue";
1141	}
1142
1143	var sel = document.getElementById('transition1');
1144	var idupper = sel.options[sel.selectedIndex].value;
1145	//alert("idupper"+idupper);
1146
1147	//Intensity range
1148	var intensityLower="-int_min "+$("#intensityLo").val();
1149	var intensityUpper="-int_max "+$("#intensityUp").val();
1150
1151	//controle des valeurs entrÃ©es par l'utilisateur
1152	if(isNaN($("#intensityLo").val()) == true \|\| $("#intensityLo").val() < 0 )
1153	{
1154	alert("Error: Invalid value for lower intensity range area");
1155	return;
1156	}
1157	if ($("#intensityLo").val() == "" )
1158	{
1159	intensityLower="";
1160	}
1161	if(isNaN($("#intensityUp").val()) == true \|\| $("#intensityUp").val() < 0 )
1162	{
1163	alert("Error: Invalid value for upper intensity range area");
1164	return;
1165	}
1166	if ($("#intensityUp").val() == "" )
1167	{
1168	intensityUpper="";
1169	}
1170
1171	//to do javascript ne sait comparer des exponenciels
1172	// if( $("#intensityLo").val() > $("#intensityUp").val() )
1173
1174	// {
1175	// alert("Error: lower intensity range area is superior to upper intensity range area ");
1176	// return;
1177	// }
1178
1179
1180	//Valeur de mean value
1181	var meanValue = "-step "+$("#meanValue2").val();
1182	//controle des valeurs entrÃ©es par l'utilisateur
1183	//Si ce n'est pas un nombre ou si il est nÃ©gatif
1184	if(isNaN($("#meanValue2").val()) == true \|\| $("#meanValue2").val() < 0 )
1185	{
1186	alert("Error: Invalid value for Average calculation area");
1187	return;
1188	}
1189	//si aucune valeur
1190	if ($("#meanValue2").val() == "" )
1191	{
1192	meanValue="";
1193	}
1194
1195	//sÃ©lection du premier choix pour l'axe des Y
1196	var field="-field "+this.selectTraceAxeY1.getValue();
1197
1198
1199	//sÃ©lection du type d'Ã©chelle pour le parametre Y1 (il y a une valeur pour ce champ que si logaritmic est choisi et si l'option est activÃ©e)
1200	if (this.selectScaleY1.getValue() == '-log_scale' && this.selectScaleY1.isDisable == false)
1201	{
1202	var logScale = this.selectScaleY1.getValue();
1203	}
1204	else
1205	{
1206	var logScale = ""
1207	}
1208
1209	//sÃ©lection du type de tracÃ© pour Y1
1210	var lineType="-line_type "+this.selectTypeTraceY1.getValue();
1211
1212
1213	//sÃ©lection ou non d'un 2eme choix pour l'axe des Y (pas de valeur pour ce champ si choix none ou si l'option n'est pas activÃ©e)
1214	if (this.selectTraceAxeY2.getValue() == 'no' \|\| this.selectTraceAxeY2.isDisable == true)
1215	{
1216	var field2 = "";
1217	}
1218	else
1219	{
1220	var field2 = "-field2 "+this.selectTraceAxeY2.getValue();
1221	}
1222
1223	//sÃ©lection du type d'Ã©chelle pour le parametre Y2 (il y a une valeur pour ce champ que si logaritmic est choisi et si l'option est activÃ©e)
1224	if (this.selectScaleY2.getValue() == '-log_scale2' && this.selectScaleY2.isDisable == false)
1225	{
1226	var logScale2 =this.selectScaleY2.getValue();
1227	}
1228	else
1229	{
1230	var logScale2 = "";
1231	}
1232
1233
1234	//sÃ©lection du type de tracÃ© pour Y2 (pas de valeur si l'option n'est pas activÃ©e)
1235	if ( this.selectTypeTraceY2.isDisable == true)
1236	{
1237	var lineType2 = "";
1238	}
1239	else
1240	{
1241	var lineType2 = "-line_type2 "+this.selectTypeTraceY2.getValue();
1242	}
1243
1244
1245	//ouverture de la div de l'image d'attente
1246	this.loadingGraphics.display();
1247
1248
1249
1250
1251	//construction de la requÃªte Fortran
1252	// var parameters = "&fortranRequest="+paramBase+" "+isotopesSelectedName+" "+rangeLower+" "+rangeUpper+" "+TransitionUpper+" "+TransitionLower+" "+intensityLower+" "+intensityUpper+" "+
1253	// meanValue+" "+nbCourbes+" "+field+" "+logScale+" "+lineType+" "+field2+" "+logScale2+" "+lineType2;
1254
1255	var parameters = "&fortranRequest="+paramBase+" "+isotopesSelectedName+" "+rangeLower+" "+rangeUpper+" "+intensityLower+" "+intensityUpper+" "+
1256	meanValue+" "+nbCourbes+" "+field+" "+logScale+" "+lineType+" "+field2+" "+logScale2+" "+lineType2;
1257
1258
1259	//remplacement de espace par "EEE" pour que le shell script ne voit qu'un seul argument en entrÃ©e
1260	parameters=parameters.replace(/ /g,"EEE");
1261	transitionUpper=transitionUpper.replace(/ /g,"EEE");
1262	//le + est interprÃ©tÃ© comme un espace (plus sera retransformÃ© en + dans le shell)
1263	transitionUpper=transitionUpper.replace(/\+/g,"plus");
1264	transitionLower=transitionLower.replace(/ /g,"EEE");
1265	transitionLower=transitionLower.replace(/\+/g,"plus");
1266
1267
1268	//envoie de la requÃªte au controller
1269	//en cas de succes appel de la fonction "handleGeisa"
1270	$.ajax( {
1271	//url: "project?methodName=createUserRequest&"+parameters+"&nbGraph="+ this.nbGraph,
1272	url: "project?methodName=createUserRequest&"+parameters+"&transitionUpper="+ transitionUpper+"&transitionLower="+ transitionLower+"&nbGraph="+ this.nbGraph,
1273	success:jQuery.proxy( this.handleGeisa, this )
1274	} );
1275	},
1276
1277
1278	//requÃªte pour interrogation de la base de donnÃ©es des transitions
1279	requestTransition: function()
1280	{
1281
1282	var nbMolecules=0;
1283
1284	//RÃ©cupÃ©ration du spectral range
1285	var spectralRangeLower = $("#RangeLower").val();
1286	var spectralRangeUpper = $("#RangeUpper").val();
1287
1288	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1289	var inputs = document.getElementsByTagName( 'input' );
1290	var count = inputs.length;
1291	var isotopesSelectedNameArray = new Array();
1292	var i=0;
1293
1294	for( i = 0; i < count; i++ )
1295	{
1296	var input = inputs.item( i );
1297	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1298	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
1299	{
1300	var molN=input.value;
1301	var molN1=molN.replace("_", ":");
1302	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1303	isotopesSelectedNameArray.push(molN1);
1304	}
1305
1306	//rÃ©cupÃ©ration du nombre de molÃ©cules sÃ©lectionnÃ©es
1307	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("all-")!= -1 && input.id.indexOf(this.selectDatabase.getValue())!= -1)
1308	{
1309	nbMolecules = nbMolecules + 1;
1310	}
1311
1312	}
1313	//alert ("nbMolecules"+nbMolecules);
1314	//si le nombre de molÃ©cule sÃ©lectionnÃ©es est supÃ©rieure Ã 1 les menus des transition sont inactifs
1315	if (nbMolecules > 1)
1316	{
1317
1318	//this.selectTransitionLower.disable();
1319	//this.selectTransitionUpper.disable();
1320	//ajoute une classe Ã celle dÃ©jÃ existante de transitionUpperTitle
1321	$("#transitionUpperTitle").addClass("notActiveText");
1322	$("#transitionLowerTitle").addClass("notActiveText");
1323	}
1324	else
1325	{
1326	//this.selectTransitionLower.enable();
1327	//this.selectTransitionUpper.enable();
1328	$("#transitionUpperTitle").removeClass("notActiveText");
1329	$("#transitionLowerTitle").removeClass("notActiveText");
1330	}
1331
1332
1333	//On ne fait appel Ã la BDD des transitions et si au plus 1 molÃ©cule est sÃ©lectionnÃ©e
1334	if (nbMolecules == 1 )
1335	{
1336	// $.ajax( {
1337	// url: "project?methodName=getTransitionByIsotopeName&isotopesSelectedName="+isotopesSelectedName+"&GeisaSelectedDatabase="+GeisaSelectedDatabase+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper,
1338	// success:jQuery.proxy( this.handleRequestTransition, this )
1339	// } );
1340
1341	$.ajax( {
1342	url: "project?methodName=getTransitionByIsotopeName&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+this.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper,
1343	success:jQuery.proxy( this.handleRequestTransition, this )
1344	} );
1345
1346	}
1347	else
1348	{
1349	//pour rÃ©initialiser le menu dÃ©roulant si aucune ou plusieurs molÃ©cules sont sÃ©lectionnÃ©es
1350	document.getElementById("transition2").length=0;
1351	//this.selectTransitionUpper.clear();
1352	document.getElementById("transition1").length=0;
1353
1354	if (nbMolecules == 0 )
1355	{
1356	//this.selectTransitionLower.add('-1', "Select a molecule");
1357	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"Select a molecule", selected:"selected"} ));
1358	//this.selectTransitionUpper.add('-1', "Select a molecule");
1359	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"Select a molecule", selected:"selected"} ));
1360	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1361	//this.selectTransitionLower.selectFirst();
1362	//this.selectTransitionUpper.selectFirst();
1363	}
1364
1365	if (nbMolecules > 1 )
1366	{
1367	//this.selectTransitionLower.add('-1', "Select a molecule");
1368	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"", selected:"selected", disabled:"disabled"} ));
1369	//this.selectTransitionUpper.add('-1', "Select a molecule");
1370	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"-1", text:"", selected:"selected", disabled:"disabled"} ));
1371	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1372	//this.selectTransitionLower.selectFirst();
1373	//this.selectTransitionUpper.selectFirst();
1374	}
1375	}
1376	},
1377
1378
1379
1380
1381	//requÃªte pour interrogation de la base de donnÃ©es des transitions en fonction d'une transition lower
1382	requestTransitionByTransitionLower: function()
1383	{
1384	var context = this[0];
1385	//exemple transitionLower=" 000" : il y a 25 caractÃšres dans chaque transition
1386	context.transitionLower = this[1];
1387
1388	//RÃ©cupÃ©ration de la Base Geisa sÃ©lectionnÃ©e
1389	var GeisaSelectedDatabase = context.selectDatabase.getValue();
1390
1391	//RÃ©cupÃ©ration du spectral range
1392	var spectralRangeLower = $("#RangeLower").val();
1393	var spectralRangeUpper = $("#RangeUpper").val();
1394
1395	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1396	var inputs = document.getElementsByTagName( 'input' );
1397	var count = inputs.length;
1398	var isotopesSelectedNameArray = new Array();
1399	var i=0;
1400
1401	for( i = 0; i < count; i++ )
1402	{
1403	var input = inputs.item( i );
1404	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1405	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(context.selectDatabase.getValue())!= -1)
1406	{
1407	var molN=input.value;
1408	var molN1=molN.replace("_", ":");
1409	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1410	isotopesSelectedNameArray.push(molN1);
1411	}
1412
1413	}
1414
1415	//le passage de javascript Ã java par ajax transforme les + en espace donc transformation des + en plus et dans le controller on fait l'inverse
1416	var transitionLowerReplaced = context.transitionLower.replace(/\+/g,"plus");
1417
1418	//Appel Ã la BDD
1419
1420	$.ajax( {
1421	url: "project?methodName=getTransitionByIsotopeNameByTransitionLower&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+context.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper+"&transitionLower="+transitionLowerReplaced,
1422	success:jQuery.proxy( context.handleRequestTransitionByTransitionLower, context)
1423	} );
1424
1425
1426
1427	},
1428
1429
1430	//requÃªte pour interrogation de la base de donnÃ©es des transitions en fonction d'une transition upper
1431	requestTransitionByTransitionUpper: function()
1432	{
1433	var context = this[0];
1434	//exemple transitionLower=" 000" : il y a 25 caractÃšres dans chaque transition
1435	context.transitionUpper = this[1];
1436
1437	//RÃ©cupÃ©ration de la Base Geisa sÃ©lectionnÃ©e
1438	var GeisaSelectedDatabase = context.selectDatabase.getValue();
1439
1440	//RÃ©cupÃ©ration du spectral range
1441	var spectralRangeLower = $("#RangeLower").val();
1442	var spectralRangeUpper = $("#RangeUpper").val();
1443
1444	//RÃ©cupÃ©ration des isotopes sÃ©lectionnÃ©s
1445	var inputs = document.getElementsByTagName( 'input' );
1446	var count = inputs.length;
1447	var isotopesSelectedNameArray = new Array();
1448	var i=0;
1449
1450	for( i = 0; i < count; i++ )
1451	{
1452	var input = inputs.item( i );
1453	//ne prendre que les isotopes sÃ©lectionnÃ©s dans la base de donnÃ©es sÃ©lectionnÃ©e (rechercher des id du type : "chk-ch3cn-GEISA-11")
1454	if( input.type == 'checkbox' && input.checked == true && input.id.indexOf("chk-")!= -1 && input.id.indexOf(context.selectDatabase.getValue())!= -1)
1455	{
1456	var molN=input.value;
1457	var molN1=molN.replace("_", ":");
1458	//tous les isotopes sÃ©lectionnÃ©s sont placÃ©s dans un tableau
1459	isotopesSelectedNameArray.push(molN1);
1460	}
1461
1462	}
1463	//le passage de javascript Ã java par ajax transforme les + en espace donc transformation des + en plus et dans le controller on fait l'inverse
1464	var transitionUpperReplaced = context.transitionUpper.replace(/\+/g,"plus");
1465
1466	//Appel Ã la BDD
1467	$.ajax( {
1468	url: "project?methodName=getTransitionByIsotopeNameByTransitionUpper&isotopesSelectedNameArray="+isotopesSelectedNameArray+"&geisaSelectedDatabase="+context.selectDatabase.getValue2()+"&spectralRangeLower="+spectralRangeLower+"&spectralRangeUpper="+spectralRangeUpper+"&transitionUpper="+transitionUpperReplaced,
1469	success:jQuery.proxy( context.handleRequestTransitionByTransitionUpper, context)
1470	} );
1471
1472
1473
1474	},
1475
1476
1477
1478	// requestTransition: function()
1479	// {
1480	// $.ajax( {
1481	// url: "project?methodName=transition&transitionValue="+ this.selectTransitionUpper.getValue(),
1482	// success:jQuery.proxy( this.handleRequestTransition, this )
1483	// } );
1484	// },
1485
1486	// HANDLES ******************************************************** = retours ajax
1487	//affichage sur l'interface
1488
1489	handleGeisa: function( result )
1490	{
1491
1492
1493	//chemin de l'image
1494	// this.pathImg = jQuery.parseJSON( result ).pathImg;
1495	this.pathImg = "<%=Controller.PATH_IMAGES%>";
1496	//numÃ©ro unique pour le nom du graph
1497	this.nb = jQuery.parseJSON( result ).nb;
1498	//Pour tracer le bon nombre de graphe et de bouton download
1499	var i=1;
1500	var content = '';
1501	for (i=1; i<this.nbGraph+1; i++) {
1502	content = content + '<img src=' + this.pathImg + "graph" + this.nb +"-"+i+ ".png"+ ' /><a href="project?methodName=downloadFile&fileName=' + "graph" + this.nb+"-"+i + ".png"+ '"><button class="dataProtocolDownloadButton">Download</button></a>';
1503	}
1504
1505	this.displayWindow(content);
1506	},
1507
1508
1509	// handleRequestTransition: function( result )
1510	// {
1511	// alert("youpi");
1512	// },
1513
1514
1515	handleRequestTransition: function( result )
1516	{
1517
1518
1519	// var transitions = jQuery.parseJSON( result ).transitions;
1520	var transitionsLower = jQuery.parseJSON( result ).transitionsLower;
1521	var transitionsUpper = jQuery.parseJSON( result ).transitionsUpper;
1522
1523	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1524	// this.selectTransitionLower.clear();
1525	document.getElementById("transition2").length=0;
1526	//this.selectTransitionUpper.clear();
1527	document.getElementById("transition1").length=0;
1528	// this.selectTransitionLower.add('transition', "Choose a transition");
1529	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1530
1531	// this.selectTransitionUpper.add('transition', "Choose a transition");
1532	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1533
1534	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1535	// this.selectTransitionLower.selectFirst();
1536	// this.selectTransitionUpper.selectFirst();
1537
1538	// alert ("transitionsUpper"+transitionsUpper);
1539	$.each(transitionsLower, jQuery.proxy( function(index, transitionsLower )
1540	{
1541	// this.selectTransitionLower.add(transitionsLower, transitionsLower,jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ]));
1542
1543
1544	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:transitionsLower, text:transitionsLower} ).bind( 'click', jQuery.proxy(this.requestTransitionByTransitionLower, [this, transitionsLower ])));
1545
1546	}, this));
1547
1548	$.each(transitionsUpper, jQuery.proxy( function(index, transitionsUpper )
1549	{
1550	//this.selectTransitionUpper.add(transitionsUpper, transitionsUpper,jQuery.proxy(this.requestTransitionByTransitionUpper, [this, transitionsUpper ]));
1551	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:transitionsUpper, text:transitionsUpper} ).bind( 'click', jQuery.proxy(this.requestTransitionByTransitionUpper, [this, transitionsUpper ])));
1552
1553	}, this));
1554
1555	},
1556
1557	handleRequestTransitionByTransitionLower : function( result )
1558	{
1559	//alert("transitionLower"+this.transitionLower);
1560	var transitionsUpperBis = jQuery.parseJSON( result ).transitionsUpperBis;
1561	//alert("transitionsUpper"+transitionsUpper);
1562
1563	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1564	// this.selectTransitionLower.clear();
1565	document.getElementById("transition2").length=0;
1566	//this.selectTransitionUpper.clear();
1567	document.getElementById("transition1").length=0;
1568	// while(0 < document.getElementById("transition1").length)
1569	// {
1570	// document.getElementById("transition1").options[0] = null;
1571	// }
1572
1573
1574	//this.selectTransitionLower.add(this.transitionLower, this.transitionLower);
1575	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled"} ));
1576	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:this.transitionLower, text:this.transitionLower, selected:"selected"} ));
1577	//this.selectTransitionUpper.add('transition', "Choose a transition");
1578	//rajout du text "Choose a transition" selectionnÃ© en premier mais on ne peut pa cliquer dessus
1579	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1580
1581
1582	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1583	//this.selectTransitionLower.selectFirst();
1584	//this.selectTransitionUpper.selectFirst();
1585
1586
1587
1588	$.each(transitionsUpperBis, jQuery.proxy( function(index, transitionsUpperBis )
1589	{
1590	// this.selectTransitionUpper.add(transitionsUpper, transitionsUpper);
1591	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:transitionsUpperBis, text:transitionsUpperBis} ));
1592
1593	}, this));
1594
1595	},
1596
1597
1598	handleRequestTransitionByTransitionUpper : function( result )
1599	{
1600	// alert("transitionUpper"+this.transitionUpper);
1601	var transitionsLowerBis = jQuery.parseJSON( result ).transitionsLowerBis;
1602	//alert("transitionsLower"+transitionsLower);
1603
1604	//pour vider les menus dÃ©roulant des transitions prÃ©cÃ©dentes
1605	// this.selectTransitionLower.clear();
1606	document.getElementById("transition2").length=0;
1607	//this.selectTransitionUpper.clear();
1608	document.getElementById("transition1").length=0;
1609
1610	// this.selectTransitionLower.add('transition', "Choose a transition");
1611	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled", selected:"selected"} ));
1612
1613	// this.selectTransitionUpper.add(this.transitionUpper, this.transitionUpper);
1614	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:"transition", text:"Choose a transition", disabled:"disabled"} ));
1615	this.selectTransitionUpper.append($( document.createElement( "option" ) ).attr( {value:this.transitionUpper, text:this.transitionUpper, selected:"selected"} ));
1616
1617
1618	//pour forcer Ã afficher le premier Ã©lÃ©ment (et non le premier Ã©lÃ©ment prÃ©cÃ©dent)
1619	//this.selectTransitionLower.selectFirst();
1620	//this.selectTransitionUpper.selectFirst();
1621
1622
1623
1624	$.each(transitionsLowerBis, jQuery.proxy( function(index, transitionsLowerBis )
1625	{
1626	//this.selectTransitionLower.add(transitionsLower, transitionsLower);
1627	this.selectTransitionLower.append($( document.createElement( "option" ) ).attr( {value:transitionsLowerBis, text:transitionsLowerBis} ));
1628	}, this));
1629
1630	},
1631	// EVENTS ********************************************************
1632	//
1633	onClickShowAdvancedOptions: function()
1634	{
1635	document.getElementById( "showAdvancedOptions" ).style.display = "none";
1636	},
1637
1638
1639
1640	//affichage de la valeur du spectral range et affichage du bloc des molecules en fonction de la base de donnees selectionnee
1641	onClickSelectDatabase: function(value)
1642	{
1643
1644	if ('GEISA2011' == value)
1645	{
1646	document.getElementById('spectralRangeTitre').innerHTML = "";
1647	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
1648	$("#RangeLower").val(0);
1649	$("#RangeUpper").val(35877.030506);
1650
1651	document.getElementById( "BDD-GEISA2011" ).style.display = "";
1652	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1653	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1654	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1655	}
1656
1657	if ('GEISAIASI2011' == value)
1658	{
1659	document.getElementById('spectralRangeTitre').innerHTML = "";
1660	document.getElementById('spectralRangeTitre').innerHTML = "Choosing spectral range (599.000793 to 3000.998767 cm<sup>-1</sup>)";
1661	$("#RangeLower").val(599.000793);
1662	$("#RangeUpper").val(3000.998767);
1663
1664	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1665	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "";
1666	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1667	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1668	}
1669
1670	if ('GEISA2003' == value)
1671	{
1672	document.getElementById('spectralRangeTitre').innerHTML = "";
1673	document.getElementById('spectralRangeTitre').innerHTML = "Choosing the spectral range from 0 to 35877.030506 cm<sup>-1</sup>";
1674	$("#RangeLower").val(0);
1675	$("#RangeUpper").val(35877.030506);
1676
1677	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1678	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1679	document.getElementById( "BDD-GEISA2003" ).style.display = "";
1680	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "none";
1681	}
1682	if ('GEISAIASI2003' == value)
1683	{
1684	document.getElementById('spectralRangeTitre').innerHTML = "";
1685	document.getElementById('spectralRangeTitre').innerHTML = "Choosing spectral range (599.000793 to 3000.998767 cm<sup>-1</sup>)";
1686	$("#RangeLower").val(599.000793);
1687	$("#RangeUpper").val(3000.998767);
1688
1689	document.getElementById( "BDD-GEISA2011" ).style.display = "none";
1690	document.getElementById( "BDD-GEISAIASI2011" ).style.display = "none";
1691	document.getElementById( "BDD-GEISA2003" ).style.display = "none";
1692	document.getElementById( "BDD-GEISAIASI2003" ).style.display = "";
1693	}
1694
1695	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1696	this.requestTransition();
1697	},
1698
1699
1700
1701	//Actions dÃ©clenchÃ©es quand on clique sur le nom d'une molÃ©cule
1702	cliquetout: function()
1703	{
1704	var context = this[0];
1705	// exemple :moleculeName = ch3ch
1706	var moleculeName = this[1];
1707	var bddVersion = this[2];
1708	var inputs = document.getElementsByTagName( 'input' );
1709	var count = inputs.length;
1710	for( i = 0; i < count; i++ )
1711	{
1712	var input = inputs.item( i );
1713	//cliquer toutes les molÃ©cules et isotopes du meme nom dans toutes les bases
1714	//if( input.type == 'checkbox' && ( input.id == ('chk-' + name + '-GEISA-11') \|\| input.id == ('chk-' + name + '-GEISA-03') \|\| input.id == ('chk-' + name + '-GEISA-IASI-11') \|\| input.id == ('chk-' + name + '-GEISA-IASI-03')
1715	// \|\| input.id == (name + '-all-GEISA-03') \|\| input.id == (name + '-all-GEISA-11') \|\| input.id == (name + '-all-GEISA-IASI-03') \|\| input.id == (name + '-all-GEISA-IASI-11')))
1716
1717	if( input.type == 'checkbox' && ( input.id.indexOf('chk-' + moleculeName + '_') != -1 \|\| input.id.indexOf('all-'+moleculeName+'-')!= -1 ))
1718
1719	{
1720	input.checked = document.getElementById( 'all-'+ moleculeName + '-' + bddVersion ).checked;
1721	}
1722	}
1723	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1724	context.requestTransition();
1725	},
1726
1727	//actions dÃ©clenchÃ©es quand on clique sur un isotope
1728	cliqueIsotope: function()
1729	{
1730	var context = this[0];
1731	//exemple isotopeName = ch3cn_134
1732	var isotopeName = this[1];
1733	// exemple moleculeName= ch3cn
1734	var moleculeName = this[2];
1735	var bddVersion = this[3];
1736	var inputs = document.getElementsByTagName( 'input' );
1737	var count = inputs.length;
1738	var i = 0;
1739	for( i = 0; i < count; i++ )
1740	{
1741	input = inputs.item( i );
1742
1743	//id=chk-ch3cn_234-GEISA2011
1744	//cliquer ou decliquer le meme isotope dans toutes les bases
1745	if( input.type == 'checkbox' && input.id.indexOf('chk-' + isotopeName) != -1)
1746	{
1747	input.checked = document.getElementById( 'chk-' + isotopeName + '-' + bddVersion ).checked;
1748
1749	}
1750	// id=all-ch3cn-GEISA2011
1751	//pour dÃ©cocher la case de la molecule quand on dÃ©coche un isotope
1752	// if( input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName) != -1 && input.checked == true )
1753	// {
1754	// input.checked = false;
1755	// }
1756	}
1757
1758
1759	//pour cocher molecule quand on clique sur un isotope et dÃ©cocher molÃ©cule quand tous les isotopes de la molÃ©cule sont dÃ©cochÃ©s
1760	var nbIsotopeSelected=0;
1761
1762	for( i = 0; i < count; i++ )
1763	{
1764	input = inputs.item( i );
1765	if( input.type == 'checkbox' && input.id.indexOf('chk-'+moleculeName+'_') != -1 && input.id.indexOf(bddVersion) != -1 && input.checked == true )
1766	{
1767	nbIsotopeSelected=nbIsotopeSelected+1;
1768	}
1769
1770	}
1771
1772
1773	for( i = 0; i < count; i++ )
1774	{
1775	input = inputs.item( i );
1776	if (input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName+'-') != -1 && nbIsotopeSelected == 0)
1777	{
1778	input.checked = false;
1779	}
1780
1781	if (input.type == 'checkbox' && input.id.indexOf('all-'+ moleculeName+'-') != -1 && nbIsotopeSelected > 0)
1782	{
1783	input.checked = true;
1784	}
1785
1786	}
1787
1788	// alert("database"+context.selectDatabase.getSize());
1789
1790	//mettre a jour le menu dÃ©roulant des transitions en fonction des isotopes sÃ©lectionnÃ©s, de la longueur d'onde et de la base geisa
1791	context.requestTransition();
1792
1793	},
1794
1795
1796
1797	//pour cacher ou voir les isotopes d'une molecule
1798	visibilite: function( )
1799	{
1800	var context = this[0];
1801	var thingId = this[1];
1802	var divs = document.getElementsByTagName( 'div' );
1803	var count = divs.length;
1804	var i = 0;
1805	for( i = 0; i < count; i++ )
1806	{
1807	var div = divs.item( i );
1808
1809
1810	if ( div.id == thingId)
1811	{
1812	if( div.style.display == "none" )
1813	{
1814	div.style.display = "";
1815	}
1816	else
1817	{
1818	div.style.display = "none";
1819	}
1820	}
1821	}
1822	},
1823
1824
1825	onBlurInputMeanValue: function()
1826	{
1827	//si step est sup a 0, ajout d'une ligne Z aux parametres Y1 et y2 si elle n'est pas dÃ©jÃ prÃ©sente
1828	// !this.selectTraceAxeY1.content('Z') indique que "Z" n'exite pas dans le menu dÃ©roulant selectTraceAxeY1
1829	if ($("#meanValue2").val() > 0 && !this.selectTraceAxeY1.content('Z'))
1830
1831	{
1832
1833	this.selectTraceAxeY1.add( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
1834	this.selectTraceAxeY2.add( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
1835	}
1836	//si step = a 0 et autres valeurs (a faire) , retrait de la ligne Z aux parametres Y1 et y2
1837	if ($("#meanValue2").val() == 0)
1838	{
1839	this.selectTraceAxeY1.remove( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY1, this ) );
1840	this.selectTraceAxeY2.remove( 'Z', "Number of lines ", jQuery.proxy(this.onClickSelectTraceAxeY2, this ) );
1841	//Selection par defaut du 1er element (pour que "Number of lines" ne soit plus selectionne par defaut si il n'existe plus)
1842	this.selectTraceAxeY1.selectFirst();
1843	this.selectTraceAxeY2.selectFirst();
1844	}
1845	},
1846
1847	onClickSelectNbCourbes: function(value)
1848	{
1849
1850	//si plusieurs courbes ou graphe choisis pour les isotopes et ou molecules, les choix pour Y2 sont inactifs
1851	if ('ca' != value)
1852	{
1853	//transformer le texte en gris
1854	document.getElementById("axeY2Titre").className = "notActiveText";
1855	document.getElementById("scaleY2Titre").className = "notActiveText";
1856	document.getElementById("typePlotY2Titre").className = "notActiveText";
1857	//pour rendre le menu dÃ©roulant inactif
1858	this.selectTraceAxeY2.disable();
1859	this.selectScaleY2.disable();
1860	this.selectTypeTraceY2.disable();
1861	}
1862	//si une seule courbe choisie pour les isotopes et ou molecules, les choix pour Y2 sont actifs
1863	if ('ca' == value)
1864	{
1865	//remet le texte en couleur active
1866	document.getElementById("axeY2Titre").className = "activeText";
1867	//rendre actif l'echelle que si l'intensite est choisie dans les parametres
1868	if (this.selectTraceAxeY2.getValue() == 'B')
1869	{
1870	document.getElementById("scaleY2Titre").className = "activeText";
1871	}
1872	//rendre actif le type de plot si ce n'est pas la valeur none qui est choisie
1873	if (this.selectTraceAxeY2.getValue() != 'no')
1874	{
1875	document.getElementById("typePlotY2Titre").className = "activeText";
1876	}
1877	//pour rendre les menu dÃ©roulant actifs
1878	this.selectTraceAxeY2.enable();
1879	//rendre actif l'echelle que si l'intensite est choisie dans les parametres
1880	if (this.selectTraceAxeY2.getValue() == 'B')
1881	{
1882	this.selectScaleY2.enable();
1883	}
1884	//rendre actif le type de plot si ce n'est pas la valeur none qui est choisie
1885	if (this.selectTraceAxeY2.getValue() != 'no')
1886	{
1887	this.selectTypeTraceY2.enable();
1888	}
1889	}
1890	},
1891
1892
1893	onClickSelectTraceAxeY1: function(value)
1894	{
1895	//si intensite n'est pas choisi pour Y1, le type d'Ã©chelle est inactif
1896	if (this.selectTraceAxeY1.getValue() != 'B')
1897	{
1898	//transformer le texte en gris
1899	document.getElementById("scaleY1Titre").className = "notActiveText";
1900	//pour rendre le menu dÃ©roulant inactif
1901	this.selectScaleY1.disable();
1902	}
1903	//si intensite est choisi pour Y1, le type d'Ã©chelle est actif
1904	if (this.selectTraceAxeY1.getValue() == 'B')
1905	{
1906	//transformer le texte en gris
1907	document.getElementById("scaleY1Titre").className = "activeText";
1908	//pour rendre le menu dÃ©roulant inactif
1909	this.selectScaleY1.enable();
1910	}
1911	},
1912
1913	onClickSelectTraceAxeY2: function(value)
1914	{
1915	//si intensite n'est pas choisi pour Y2, le type d'Ã©chelle est inactif
1916	if (this.selectTraceAxeY2.getValue() != 'B')
1917	{
1918	//transformer le texte en gris
1919	document.getElementById("scaleY2Titre").className = "notActiveText";
1920	//pour rendre le menu dÃ©roulant inactif
1921	this.selectScaleY2.disable();
1922	}
1923	//si intensite est choisi pour Y2, le type d'Ã©chelle est actif
1924	if (this.selectTraceAxeY2.getValue() == 'B')
1925	{
1926	//transformer le texte en gris
1927	document.getElementById("scaleY2Titre").className = "activeText";
1928	//pour rendre le menu dÃ©roulant inactif
1929	this.selectScaleY2.enable();
1930	}
1931	//si aucun parametre est choisi pour Y2, le type de plot est inactif
1932	if (this.selectTraceAxeY2.getValue() == 'no')
1933	{
1934	//transformer le texte en gris
1935	document.getElementById("typePlotY2Titre").className = "notActiveText";
1936	//pour rendre le menu dÃ©roulant inactif
1937	this.selectTypeTraceY2.disable();
1938	}
1939	//si un parametre est choisi pour Y2, le type de plot est actif
1940	if (this.selectTraceAxeY2.getValue() != 'no')
1941	{
1942	//transformer le texte en gris
1943	document.getElementById("typePlotY2Titre").className = "activeText";
1944	//pour rendre le menu dÃ©roulant inactif
1945	this.selectTypeTraceY2.enable();
1946	}
1947
1948	},
1949
1950	onClickSubmit: function()
1951	{
1952	this.requestGeisa();
1953	},
1954
1955	displayWindow: function(content)
1956	{
1957	//fermeture de la div de l'image d'attente
1958	this.loadingGraphics.hide();
1959
1960	// var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=' + this.nameImg + '"><button class="dataProtocolDownloadButton">Download</button></a>';
1961
1962	//alert(content);
1963	var $dialog = $( '<div></div>' )
1964
1965	.html( content )
1966
1967	.dialog( {
1968	autoOpen: false,
1969	title: "GEISA : spectroscopic database",
1970	//minHeight: 500,
1971	// minWidth: 660,
1972	height: 560,
1973	width:700,
1974	//Exemple de valeurs possible pour position : "middle", "top", [200, 100]
1975	position: "middle"
1976
1977	} );
1978	$dialog.dialog( 'open' )
1979	},
1980
1981	// displayWindow: function(coordinate)
1982	//{
1983	//var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=bib.txt"><button class="dataProtocolDownloadButton">Download</button></a>';
1984	// var content = '<img src=' + this.pathImg + ' /><a href="project?methodName=downloadFile&fileName=' + this.nameImg + '"><button class="dataProtocolDownloadButton">Download</button></a>';
1985
1986	//alert(content);
1987	// var $dialog = $( '<div></div>' )
1988	// .html( content + content1 )
1989
1990	// .dialog( {
1991	// autoOpen: false,
1992	// title: "GEISA : spectroscopic database",
1993	// minHeight: 500,
1994	// minWidth: 660,
1995
1996	//coordonnee y y
1997	// position:coordinate
1998
1999	// } );
2000	// $dialog.dialog( 'open' )
2001	//},
2002
2003
2004	onClickDownload: function()
2005	{
2006	document.location.href = "project?methodName=downloadFile&fileName=bib.txt";
2007	}
2008
2009
2010	} );
2011
2012
2013	</script>
2014
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2016

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