source: CMIP6/PAMIP/CM6-pdSST-futAntSIC-001/CM6-pdSST-futAntSIC-001/Script_Output_CM6-pdSST-futAntSIC-001.000002 @ 5160

Last change on this file since 5160 was 5160, checked in by ggalod, 4 years ago

sauvegarde exp PAMIP
File size: 27.5 KB
Line 
1slurmstepd-irene1420: error: task/cgroup: task[0] unable to set taskset '0x0'
2+ SCRIPT_PID=57504
3+ set +x
4+ /bin/ksh -x /tmp/jobstart.57477
5+ BATCH_NUM_PROC_TOT=580
6Mon Oct  7 14:31:41 CEST 2019
7
8#######################################
9#       ANOTHER GREAT SIMULATION      #
10#######################################
11
12
13====================================================
14Where do we run ? irene1420
15Linux irene1420 3.10.0-957.12.2.el7.x86_64 #1 SMP Fri Apr 19 21:09:07 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
16====================================================
17
18Source machine dependent settings for irene Intel X-64 at TGCC
192019-10-07 14:31:41 --Debug1--> Module will be loaded once we know the compiler version
202019-10-07 14:31:41 --Debug1--> List of loaded modules:
21Currently Loaded Modulefiles:
22 1) ccc/1.0(default)                             25) nco/4.6.0(default)     
23 2) datadir/gencmip6                             26) cdo/1.7.2rc6(default) 
24 3) dfldatadir/gencmip6                         
25 4) flavor/buildcompiler/intel/17(default)       
26 5) feature/mkl/lp64                             
27 6) feature/mkl/sequential                       
28 7) mkl/17.0.6.256(default)                     
29 8) licsrv/intel                                 
30 9) c/intel/17.0.6.256(default)                 
3110) c++/intel/17.0.6.256(default)               
3211) fortran/intel/17.0.6.256(default)           
3312) intel/17.0.6.256(default)                   
3413) flavor/buildmpi/openmpi/2.0                 
3514) feature/openmpi/mpi_compiler/intel(default) 
3615) flavor/openmpi/standard(default)             
3716) hwloc/1.11.3(default)                       
3817) feature/openmpi/net/auto(default)           
3918) .tuning/openmpi/2.0.4                       
4019) mpi/openmpi/2.0.4(default)                   
4120) flavor/hdf5/parallel                         
4221) netcdf-c/4.6.0(default)                     
4322) netcdf-fortran/4.4.4(default)               
4423) hdf5/1.8.20(default)                         
4524) feature/bridge/heterogenous_mpmd             
46Check libIGCM_debug ..............................................[ OK ]
47Check libIGCM_card ...............................................[ OK ]
48Check libIGCM_date ...............................................[ OK ]
49
502019-10-07 14:31:46 --Debug1--> IGCM_config_CommonConfiguration
512019-10-07 14:31:46 --Debug1--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/config.card
52
532019-10-07 14:31:46 --Debug1--> DefineArrayFromOption : config_UserChoices
542019-10-07 14:31:46 --------------Debug3--> JobName : CM6-pdSST-futAntSIC-001
552019-10-07 14:31:46 --------------Debug3--> ExperimentName : pdSST-futAntSIC
562019-10-07 14:31:46 --------------Debug3--> SpaceName : PROD
572019-10-07 14:31:46 --------------Debug3--> TagName : LMDZOR
582019-10-07 14:31:46 --------------Debug3--> LongName : IPSLCM6.1.9-LR
592019-10-07 14:31:46 --------------Debug3--> ModelName : IPSL-CM6A-LR
602019-10-07 14:31:46 --------------Debug3--> Member : r1i1p1f1
612019-10-07 14:31:46 --------------Debug3--> ExpType : LMDZOR/amip_CMIP6
622019-10-07 14:31:46 --------------Debug3--> DataProject : gencmip6
632019-10-07 14:31:46 --------------Debug3--> CalendarType : leap
642019-10-07 14:31:46 --------------Debug3--> DateBegin : 2000-04-01
652019-10-07 14:31:46 --------------Debug3--> DateEnd : 2001-05-31
662019-10-07 14:31:46 --------------Debug3--> PeriodLength : 9M
67
682019-10-07 14:31:46 --Debug1--> DefineArrayFromOption : config_Ensemble
69
702019-10-07 14:31:46 --Debug1--> Warning with readding of config_Ensemble variable in /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/config.card.
712019-10-07 14:31:46 --Debug1--> Warning: Section Ensemble not found
72
732019-10-07 14:31:46 --Debug1--> DefineArrayFromOption : config_Post
742019-10-07 14:31:46 --------------Debug3--> RebuildFrequency : NONE
752019-10-07 14:31:46 --------------Debug3--> PackFrequency : 18M
762019-10-07 14:31:46 --------------Debug3--> TimeSeriesFrequency : NONE
772019-10-07 14:31:46 --------------Debug3--> SeasonalFrequency : NONE
782019-10-07 14:31:46 --------------Debug3--> SeasonalFrequencyOffset : 0
792019-10-07 14:31:46 --------------Debug3--> MetricsPCMDI : FALSE
80
81unload module dfldatadir/gencmip6 (Data Directory)
82unload module datadir/gencmip6 (Data Directory)
83load module datadir/gencmip6 (Data Directory)
84load module dfldatadir/gencmip6 (Data Directory)
852019-10-07 14:31:47 --Debug1--> Load dfldatadir for DataProject red in config.card : gencmip6
862019-10-07 14:31:47 --Debug1--> R_OUT has been defined = /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT
872019-10-07 14:31:47 --Debug1--> R_BUF has been defined = /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT
882019-10-07 14:31:47 --Debug1--> R_FIG has been defined = /ccc/work/cont003/gencmip6/p86ggas/IGCM_OUT
89IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/REBUILD
902019-10-07 14:31:47 --------Debug2--> run.card exists
91IGCM_sys_getJobSchedulerID
92IGCM_sys_check_quota
932019-10-07 14:31:48 --------Debug2--> IGCM_debug_sendAMQP_projectAccounting
94
952019-10-07 14:31:48 --Debug1--> IGCM_config_Initialize
96IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl
97IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/libIGCM
98IGCM_sys_TestDir : /ccc/cont003/dsku/perle2/home/app/gencmip6/p86ggas/PAMIP/26042019/modipsl/bin
99send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
100IGCM_sys_TestDir : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001
101Keep trace of inital SUBMIT_DIR :
102postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
103total 420
104-rw-r--r--.  1 p86ggas gencmip6   5926 Oct  7 14:31 Script_Output_CM6-pdSST-futAntSIC-001.000002
105drwxr-sr-x.  6 p86ggas gencmip6   4096 Oct  7 14:31 .
106-rw-r--r--.  1 p86ggas gencmip6 229704 Oct  7 14:31 Script_Output_CM6-pdSST-futAntSIC-001.000003
107-rw-r--r--.  1 p86ggas gencmip6   1935 Oct  7 14:31 run.card.bak
108-rw-r--r--.  1 p86ggas gencmip6   1935 Oct  7 14:31 run.card
109drwxr-sr-x. 52 p86ggas gencmip6   4096 Oct  7 13:29 ..
110-rw-r--r--.  1 p86ggas gencmip6   5112 Oct  7 13:28 config.card
111-rw-r--r--.  1 p86ggas gencmip6      6 Oct  7 13:28 tmpa
112drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 COMP
113-rw-r--r--.  1 p86ggas gencmip6  20446 Oct  7 13:28 Job_CM6-pdSST-futAntSIC-001
114-rw-r--r--.  1 p86ggas gencmip6   1913 Oct  7 13:28 run.card-oold1
115-rw-r--r--.  1 p86ggas gencmip6   5103 Oct  7 13:28 config.card_old
116-rw-r--r--.  1 p86ggas gencmip6   5103 Oct  7 13:28 config.card-oold2
117-rw-r--r--.  1 p86ggas gencmip6  20404 Oct  7 13:28 Job_CM619-pamip-STD_SAVED_36783
118-rw-r--r--.  1 p86ggas gencmip6   1727 Oct  7 13:28 run.card-oold2
119-rw-r--r--.  1 p86ggas gencmip6  20404 Oct  7 13:28 Job_CM619-pamip-STD_SAVED_149812
120-rw-r--r--.  1 p86ggas gencmip6    321 Oct  7 13:28 readme
121-rw-r--r--.  1 p86ggas gencmip6   6944 Oct  7 13:28 PACKOUTPUT.out_1913357
122-rwxr--r--.  1 p86ggas gencmip6  11053 Oct  7 13:28 pack_output.job
123-rw-r--r--.  1 p86ggas gencmip6    158 Oct  7 13:28 ferret.jnl
124-rw-r--r--.  1 p86ggas gencmip6  20422 Oct  7 13:28 old_Job_CM619-pamip-STD
125-rw-r--r--.  1 p86ggas gencmip6   1546 Oct  7 13:28 run.card.init
126drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 POST
127drwxr-sr-x.  2 p86ggas gencmip6   8192 Oct  7 13:28 PARAM
128drwxr-sr-x.  2 p86ggas gencmip6   4096 Oct  7 13:28 DRIVER
129
1302019-10-07 14:31:48 --Debug1--> DefineArrayFromSection : ListOfComponents
1312019-10-07 14:31:48 --------------Debug3--> ATM
1322019-10-07 14:31:48 --------------Debug3--> SRF
1332019-10-07 14:31:48 --------------Debug3--> SBG
1342019-10-07 14:31:48 --------------Debug3--> IOS
135
1362019-10-07 14:31:48 --Debug1--> DefineArrayFromOption : config_Restarts
1372019-10-07 14:31:48 --------------Debug3--> OverRule : y
1382019-10-07 14:31:48 --------------Debug3--> RestartDate : 2000-03-31
1392019-10-07 14:31:48 --------------Debug3--> RestartJobName : CM6-amip-redo-001
1402019-10-07 14:31:48 --------------Debug3--> RestartPath : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/amip
141
1422019-10-07 14:31:48 --------Debug2--> Define Script_Output_Prefix and Exe_Output
1432019-10-07 14:31:48 --------------Debug3--> Script_Output_Prefix = Script_Output
1442019-10-07 14:31:48 --------------Debug3--> Exe_Output = out_execution
145
1462019-10-07 14:31:48 --------Debug2--> (Re)Define R_INIT, R_BC and PeriodNb
1472019-10-07 14:31:48 --------------Debug3--> R_IN=/ccc/work/cont003/igcmg/igcmg/IGCM
1482019-10-07 14:31:48 --------------Debug3--> R_INIT=/ccc/work/cont003/igcmg/igcmg/IGCM/INIT
1492019-10-07 14:31:48 --------------Debug3--> R_BC=/ccc/work/cont003/igcmg/igcmg/IGCM/BC
1502019-10-07 14:31:48 --------------Debug3--> Loop in main Job with 1 period(s)
151IGCM_sys_TestDirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001
152IGCM_sys_TestDir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001
153IGCM_sys_MkdirWork : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669751_57504/CM6-pdSST-futAntSIC-001.57504
154IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669751_57504/CM6-pdSST-futAntSIC-001.57504
155
1562019-10-07 14:31:48 --Debug1--> IGCM_comp_Initialize
157
1582019-10-07 14:31:49 --Debug1--> Initialize ATM : lmdz component.
1592019-10-07 14:31:49 --------------Debug3--> DefineArrayFromSection : ATM
1602019-10-07 14:31:49 --------------Debug3--> Found in section config_ATM : WriteFrequency Restart RestartDate RestartJobName RestartPath
1612019-10-07 14:31:49 --Debug1--> Write frequency for lmdz : 1M
1622019-10-07 14:31:49 --------Debug2--> Initialize following component library
1632019-10-07 14:31:49 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/DRIVER/lmdz.driver
1642019-10-07 14:31:49 --------------Debug3--> With tag : LMDZ
1652019-10-07 14:31:49 --------------Debug3--> Initialize ATM output directory.
166IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM
167IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Output
168IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Analyse
169IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM
170IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Output
171IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Analyse
172IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Restart
173IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/ATM/Debug
1742019-10-07 14:31:49 --------Debug2--> DefineArrayFromSection : lmdz_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/lmdz.card
1752019-10-07 14:31:49 --------------Debug3--> lmdz_UserChoices_values:
1762019-10-07 14:31:49 --------------Debug3--> LMDZ_Physics=NPv6.1.3
1772019-10-07 14:31:49 --------------Debug3--> ConfType=annuel
1782019-10-07 14:31:49 --------------Debug3--> flag_aerosol=6
1792019-10-07 14:31:49 --------------Debug3--> ok_ade=y
1802019-10-07 14:31:49 --------------Debug3--> ok_aie=y
1812019-10-07 14:31:49 --------------Debug3--> aerosol_couple=n
1822019-10-07 14:31:49 --------------Debug3--> read_climoz=1
1832019-10-07 14:31:49 --------------Debug3--> ok_cdnc=y
1842019-10-07 14:31:49 --------------Debug3--> tau_gl=2.
1852019-10-07 14:31:49 --------------Debug3--> ByPass_hgardfou_teta=n
1862019-10-07 14:31:49 --------------Debug3--> ByPass_hgardfou_mats=n
1872019-10-07 14:31:49 --------------Debug3--> OutLevel=low
1882019-10-07 14:31:49 --------------Debug3--> LMDZ_COSP_OK=y
1892019-10-07 14:31:49 --------------Debug3--> LMDZ_COSP_monthly=n
1902019-10-07 14:31:49 --------------Debug3--> LMDZ_COSP_daily=n
1912019-10-07 14:31:49 --------------Debug3--> LMDZ_COSP_hf=n
1922019-10-07 14:31:49 --------------Debug3--> LMDZ_NMC_monthly=n
1932019-10-07 14:31:49 --------------Debug3--> LMDZ_NMC_daily=n
1942019-10-07 14:31:49 --------------Debug3--> LMDZ_NMC_hf=n
1952019-10-07 14:31:49 --------------Debug3--> ok_guide=n
1962019-10-07 14:31:49 --------Debug2--> DefineArrayFromOption : lmdz_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/lmdz.card
1972019-10-07 14:31:50 --------------Debug3--> 2D time series activated for Post_1M_histmth
1982019-10-07 14:31:50 --------------Debug3--> 3D time series activated with chunck for Post_1M_histmth
1992019-10-07 14:31:50 --------------Debug3--> Initialize lmdz with driver.
200LMDZ physics version : NPv6.1.3
201
2022019-10-07 14:31:50 --Debug1--> Initialize SRF : orchidee component.
2032019-10-07 14:31:50 --------------Debug3--> DefineArrayFromSection : SRF
2042019-10-07 14:31:50 --------------Debug3--> Found in section config_SRF : WriteFrequency Restart RestartDate RestartJobName RestartPath
2052019-10-07 14:31:50 --Debug1--> Write frequency for orchidee :
2062019-10-07 14:31:50 --------Debug2--> Initialize following component library
2072019-10-07 14:31:50 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/DRIVER/orchidee.driver
2082019-10-07 14:31:50 --------------Debug3--> With tag : ORCHIDEE
2092019-10-07 14:31:50 --------------Debug3--> Initialize SRF output directory.
210IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF
211IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Output
212IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Analyse
213IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF
214IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Output
215IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Analyse
216IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Restart
217IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SRF/Debug
2182019-10-07 14:31:50 --------Debug2--> DefineArrayFromSection : orchidee_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/orchidee.card
2192019-10-07 14:31:50 --------------Debug3--> orchidee_UserChoices_values:
2202019-10-07 14:31:50 --------------Debug3--> DefSuffix=CWRR
2212019-10-07 14:31:50 --------------Debug3--> VEGET_UPDATE=1Y
2222019-10-07 14:31:50 --------------Debug3--> output_level_sechiba_history=0
2232019-10-07 14:31:50 --------------Debug3--> output_level_sechiba_out_2=NONE
2242019-10-07 14:31:50 --------------Debug3--> output_level_sechiba_history_4dim=NONE
2252019-10-07 14:31:50 --------------Debug3--> output_freq_sechiba_history=1mo
2262019-10-07 14:31:50 --------------Debug3--> output_freq_sechiba_out_2=10800s
2272019-10-07 14:31:50 --------------Debug3--> output_freq_sechiba_history_4dim=1mo
2282019-10-07 14:31:50 --------Debug2--> DefineArrayFromOption : orchidee_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/orchidee.card
2292019-10-07 14:31:50 --------------Debug3--> 2D time series activated for Post_1M_sechiba_history
2302019-10-07 14:31:50 --------------Debug3--> 3D time series activated for Post_1M_sechiba_history
2312019-10-07 14:31:50 --------------Debug3--> Initialize orchidee with driver.
232
2332019-10-07 14:31:51 --Debug1--> Initialize SBG : stomate component.
2342019-10-07 14:31:51 --------------Debug3--> DefineArrayFromSection : SBG
2352019-10-07 14:31:51 --------------Debug3--> Found in section config_SBG : WriteFrequency Restart RestartDate RestartJobName RestartPath
2362019-10-07 14:31:51 --Debug1--> Write frequency for stomate :
2372019-10-07 14:31:51 --------Debug2--> Initialize following component library
2382019-10-07 14:31:51 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/DRIVER/stomate.driver
2392019-10-07 14:31:51 --------------Debug3--> With tag : ORCHIDEE
2402019-10-07 14:31:51 --------------Debug3--> Initialize SBG output directory.
241IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG
242IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Output
243IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Analyse
244IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG
245IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Output
246IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Analyse
247IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Restart
248IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/SBG/Debug
2492019-10-07 14:31:51 --------Debug2--> DefineArrayFromSection : stomate_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/stomate.card
2502019-10-07 14:31:51 --------------Debug3--> stomate_UserChoices_values:
2512019-10-07 14:31:51 --------------Debug3--> output_level_stomate_history=10
2522019-10-07 14:31:51 --------------Debug3--> output_level_stomate_ipcc_history=1
2532019-10-07 14:31:51 --------------Debug3--> output_freq_stomate_history=1mo
2542019-10-07 14:31:51 --------------Debug3--> output_freq_stomate_ipcc_history=1mo
2552019-10-07 14:31:51 --------Debug2--> DefineArrayFromOption : stomate_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/stomate.card
2562019-10-07 14:31:51 --------------Debug3--> 2D time series activated for Post_1M_stomate_history
2572019-10-07 14:31:51 --------------Debug3--> 3D time series activated for Post_1M_stomate_history
2582019-10-07 14:31:51 --------------Debug3--> 2D time series activated for Post_1M_stomate_ipcc_history
2592019-10-07 14:31:51 --------------Debug3--> Initialize stomate with driver.
260
2612019-10-07 14:31:51 --Debug1--> Initialize IOS : xios component.
2622019-10-07 14:31:52 --------------Debug3--> DefineArrayFromSection : IOS
2632019-10-07 14:31:52 --------------Debug3--> Found in section config_IOS : WriteFrequency Restart RestartDate RestartJobName RestartPath
2642019-10-07 14:31:52 --Debug1--> Write frequency for xios :
2652019-10-07 14:31:52 --------Debug2--> Initialize following component library
2662019-10-07 14:31:52 --------Debug2--> /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/DRIVER/xios.driver
2672019-10-07 14:31:52 --------------Debug3--> With tag : XIOS
2682019-10-07 14:31:52 --------------Debug3--> Initialize IOS output directory.
269IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS
270IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Output
271IGCM_sys_MkdirArchive : /ccc/store/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Analyse
272IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS
273IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Output
274IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Analyse
275IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Restart
276IGCM_sys_Mkdir : /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/IOS/Debug
2772019-10-07 14:31:52 --------Debug2--> DefineArrayFromSection : xios_UserChoices /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/xios.card
2782019-10-07 14:31:52 --------Debug2--> DefineArrayFromOption : xios_OutputFiles /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/COMP/xios.card
2792019-10-07 14:31:52 --------------Debug3--> Initialize xios with driver.
280INITIALIZE IOS !!!
281
282
2832019-10-07 14:31:52 --Debug1--> IGCM_config_Check
284
2852019-10-07 14:31:52 --Debug1--> Asynchronous rebuild has not been activated
2862019-10-07 14:31:52 --Debug1--> Proceed with standard post-treatment pathway
287
2882019-10-07 14:31:52 --Debug1--> Check coherence between TimeSeriesFrequency and PeriodLength
2892019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M
2902019-10-07 14:31:52 --Debug1--> Check coherence between SeasonalFrequency and PeriodLength
2912019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=9M
2922019-10-07 14:31:52 --Debug1--> Check coherence between PackFrequency and PeriodLength
2932019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=18M Slave=9M
2942019-10-07 14:31:52 --Debug1--> Check coherence between TimeSeriesFrequency and PackFrequency
2952019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M
2962019-10-07 14:31:52 --Debug1--> Check coherence between SeasonalFrequency and PackFrequency
2972019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=NONE Slave=18M
2982019-10-07 14:31:52 --Debug1--> Check coherence between Post_1M_histmth Chunck3D frequency and TimeSeriesFrequency
2992019-10-07 14:31:52 --------Debug2--> IGCM_post_CheckModuloFrequency : Master=100Y Slave=NONE
300
3012019-10-07 14:31:52 --Debug1--> Check if there is enough space on temporary filesystem
302IGCM_sys_check_quota
303
3042019-10-07 14:31:55 --Debug1--> Check where RUN_DIR_PATH variable is pointing to
305IGCM_sys_check_path
306
307Starting iteration 1 / 1
308
3092019-10-07 14:31:55 --Debug1--> IGCM_config_PeriodStart
310
311IGCM_sys_Cd : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001
3122019-10-07 14:31:56 --------Debug2--> Save previous ksh job output
313IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-001.000002 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/Out/Script_Output_CM6-pdSST-futAntSIC-001.000002.57504
314IGCM_sys_Cp : Script_Output_CM6-pdSST-futAntSIC-001.000003 /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/Out/Script_Output_CM6-pdSST-futAntSIC-001.000003.57504
3152019-10-07 14:31:56 --------Debug2--> Save current run.card
316IGCM_sys_Cp : /ccc/cont003/home/gencmip6/p86ggas/PAMIP/26042019/modipsl/config/LMDZOR_v6/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/run.card /ccc/scratch/cont003/gencmip6/p86ggas/IGCM_OUT/LMDZOR/PROD/pdSST-futAntSIC/CM6-pdSST-futAntSIC-001/Out/run.card
317IGCM_sys_Cd : /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669751_57504/CM6-pdSST-futAntSIC-001.57504
318
3192019-10-07 14:31:56 --------Debug2--> Number of months for PeriodLength : 9
320
3212019-10-07 14:31:56 --Debug1--> IGCM_config_DateCoherency
322
323
3242019-10-07 14:31:57 --Debug1--> CyclicYear wont be use without adding CyclicBegin and CyclicEnd in config.card
325
3262019-10-07 14:31:57 --Debug1--> IGCM_config_PeriodStart : Before Execution
3272019-10-07 14:31:57 --Debug1--> Year of simulation : 2001
3282019-10-07 14:31:57 --Debug1--> Month of simulation : 01
3292019-10-07 14:31:57 --Debug1--> PeriodLengthInDays : 273
3302019-10-07 14:31:57 --Debug1--> PeriodDateBegin : 20010101
3312019-10-07 14:31:57 --Debug1--> PeriodDateEnd : 20010930
3322019-10-07 14:31:57 --Debug1--> SimulationLengthInDays : 548
3332019-10-07 14:31:57 --Debug1--> ExperienceLengthInDays : 426
3342019-10-07 14:31:57 --Debug1--> IGCM_config_ConfigureExecution
3352019-10-07 14:31:57 --Debug1--> ATM
3362019-10-07 14:31:57 --------Debug2--> 71MPI
3372019-10-07 14:31:57 --------Debug2--> 8OMP
3382019-10-07 14:31:57 --Debug1--> IOS
3392019-10-07 14:31:57 --------Debug2--> 12MPI
3402019-10-07 14:31:57 --Debug1--> MPI/OMP treatment coreNumber = 580
3412019-10-07 14:31:57 --Debug1--> MPI/OMP treatment mpiTasks = 83
3422019-10-07 14:31:57 --Debug1--> MPI/OMP treatment openMPthreads = 8
3432019-10-07 14:31:57 --Debug1--> MPI/OMP treatment executionType = 2
344IGCM_sys_build_execution_scripts
3452019-10-07 14:31:57 --Debug1--> You run lmdz.x on 8 OMP threads
346IGCM_sys_Chmod : u+x script_lmdz.x.ksh
347IGCM_sys_Chmod : u+x script_xios.x.ksh
348IGCM_sys_Chmod : u+x run_file
349run_file contains :
35071-8 env OMP_NUM_THREADS=8 ./script_lmdz.x.ksh
35112-1 env OMP_NUM_THREADS=1 ./script_xios.x.ksh
3522019-10-07 14:31:57 --Debug1--> sys Irene : execution command is
3532019-10-07 14:31:57 --Debug1--> /usr/bin/time ccc_mprun -E-K1 -f ./run_file
3542019-10-07 14:31:57 --Debug1--> break because '${SimulationLengthInDays} -gt ${ExperienceLengthInDays}' : 548 -gt 426
355
3562019-10-07 14:31:57 --Debug1--> IGCM_config_Finalize
357
358IGCM_sys_SendMail :
359send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
360postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
3612019-10-07 14:32:07 --Debug1--> Normal End of computation.
362IGCM_sys_Cd : ..
363IGCM_sys_RmRunDir : -rf /ccc/scratch/cont003/gencmip6/p86ggas/RUN_DIR/2669751_57504
364send-mail: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
365Mon Oct  7 14:32:08 CEST 2019
366########## ########## ########## ########## ########## ########## ########## ##########
367Execution Sum Up
368########## ########## ########## ########## ########## ########## ########## ##########
369postdrop: warning: inet_protocols: disabling IPv6 name/address support: Address family not supported by protocol
370Jobid     : 2669751
371Jobname   : CM6-pdSST-futAntSIC-001
372User      : p86ggas
373Account   : gen7403@skylake
374Limits    : time = 2:14:00 , memory/task = 3750 Mo
375Date      : submit = 07/10/2019 14:31:38 , start = 07/10/2019 14:31:38 , end = 07/10/2019 16:45:39
376Execution : partition = skylake , QoS = normal , Comment = (null)
377Resources : ntasks = 624 , cpus/task = 1 , ncpus = 624 , nodes = 13
378   Nodes=irene[1420-1431,1523] CPU_IDs=0-47 Mem=180000 GRES_IDX=
379 
380Memory / step
381--------------
382                          Resident Size (Mo)                     Virtual Size (Go)
383JobID            Max     (Node:Task)       AveTask    Max  (Node:Task)            AveTask
384-----------      ------------------------  -------    --------------------------  -------
385
386Accounting / step
387------------------
388
389JobID           JobName                  Ntasks  Ncpus Nnodes  Layout       Elapsed               User         System     Eff  State
390------------    ------------             ------  ----- ------  -------      -------               -------      ------     ---  -----
3912669751         CM6-pdSST-futAntSIC-001       -    624     13        -     00:00:31   (100%)            -            -      -  -
392########## ########## ########## ########## ########## ########## ########## ##########
Note: See TracBrowser for help on using the repository browser.