[4426] | 1 | ###################### |
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| 2 | ## IRENE TGCC/CEA ## |
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| 3 | ###################### |
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| 4 | #MSUB -r MONITORING # Job name |
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| 5 | #MSUB -o MONITORING.out_%I |
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| 6 | #MSUB -e MONITORING.out_%I |
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| 7 | #MSUB -n 1 # Number of cores |
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| 8 | #MSUB -T 80000 # Maximum elapsed time |
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| 9 | #MSUB -q skylake |
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| 10 | #MSUB -c 4 |
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| 11 | #MSUB -Q normal |
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| 12 | #MSUB -A dcpcmip6 |
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| 13 | #MSUB -m store,work,scratch |
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| 14 | set +x |
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| 15 | |
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| 16 | #************************************************************** |
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| 17 | # Author: Sebastien Denvil |
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| 18 | # Contact: Sebastien.Denvil__at__ipsl.jussieu.fr |
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| 19 | # $Revision:: 1468 $ Revision of last commit |
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| 20 | # $Author:: mafoipsl $ Author of last commit |
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| 21 | # $Date:: 2018-08-14 15:55:41 +0200 (Tue, 14 Aug 2018) $ Date of last commit |
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| 22 | # IPSL (2006) |
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| 23 | # This software is governed by the CeCILL licence see libIGCM/libIGCM_CeCILL.LIC |
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| 24 | # |
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| 25 | #************************************************************** |
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| 26 | |
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| 27 | #set -eu |
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| 28 | #set -vx |
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| 29 | |
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| 30 | date |
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| 31 | |
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| 32 | |
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| 33 | #D- Task type DO NOT CHANGE (computing, post-processing or checking) |
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| 34 | TaskType=post-processing |
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| 35 | |
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| 36 | ######################################################################## |
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| 37 | |
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| 38 | #D- Flag to determine if this job in a standalone mode |
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| 39 | #D- Default : value from AA_job if any |
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| 40 | StandAlone=${StandAlone:=true} |
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| 41 | |
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| 42 | #D- Path to libIGCM |
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| 43 | #D- Default : value from AA_job if any |
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| 44 | # WARNING For StandAlone use : To run this script on some machine (ada and cesium) |
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| 45 | # WARNING you must check MirrorlibIGCM variable in sys library. |
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| 46 | # WARNING If this variable is true, you must use libIGCM_POST path instead |
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| 47 | # WARNING of your running libIGCM directory. |
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| 48 | libIGCM=${libIGCM:=/ccc/work/cont003/gencmip6/devillim/modipsl_v14fev/libIGCM} |
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| 49 | |
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| 50 | #D- Increased verbosity (1, 2, 3) |
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| 51 | #D- Default : value from AA_job if any |
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| 52 | Verbosity=${Verbosity:=3} |
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| 53 | |
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| 54 | #D- Low level debug : to bypass lib test checks and stack construction |
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| 55 | #D- Default : value from AA_job if any |
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| 56 | DEBUG_debug=${DEBUG_debug:=false} |
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| 57 | |
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| 58 | #D- TEMPORARY Flag to determine atmospheric resolution |
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| 59 | #D- Default : value from atmospheric driver if any |
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| 60 | RESOL_ATM=${RESOL_ATM:=ALL} |
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| 61 | |
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| 62 | #D- Flag to determine surface resolution |
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| 63 | #D- Default : value from surface driver if any |
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| 64 | RESOL_SRF=${RESOL_SRF:=ALL} |
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| 65 | |
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| 66 | #D- Flag to determine surface resolution |
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| 67 | #D- Default : value from surface driver if any |
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| 68 | RESOL_SBG=${RESOL_SBG:=ALL} |
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| 69 | |
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| 70 | #D- TEMPORARY Flag to determine ocean resolution |
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| 71 | #D- Default : value from ocean driver if any |
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| 72 | RESOL_OCE=${RESOL_OCE:=ORCA1} |
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| 73 | |
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| 74 | #D- TEMPORARY Flag to determine ice resolution |
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| 75 | #D- Default : value from ice driver if any |
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| 76 | RESOL_ICE=${RESOL_OCE:=ORCA1} |
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| 77 | |
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| 78 | #D- TEMPORARY Flag to determine marine biogeochemistry resolution |
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| 79 | #D- Default : value from ice driver if any |
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| 80 | RESOL_MBG=${RESOL_OCE:=ORCA1} |
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| 81 | |
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| 82 | ###################################################################### |
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| 83 | |
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| 84 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
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| 85 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
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| 86 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
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| 87 | #------- |
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| 88 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
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| 89 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
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| 90 | #------- |
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| 91 | RUN_DIR=${RUN_DIR_PATH} |
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| 92 | IGCM_sys_MkdirWork ${RUN_DIR} |
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| 93 | IGCM_sys_Cd ${RUN_DIR} |
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| 94 | #------- |
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| 95 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
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| 96 | ( ${DEBUG_debug} ) && IGCM_card_Check |
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| 97 | ( ${DEBUG_debug} ) && IGCM_date_Check |
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| 98 | |
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| 99 | ###################################################################### |
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| 100 | |
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| 101 | #set -vx |
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| 102 | |
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| 103 | # ------------------------------------------------------------------ |
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| 104 | # Test if all was right before proceeding further |
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| 105 | # ------------------------------------------------------------------ |
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| 106 | IGCM_debug_Verif_Exit |
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| 107 | |
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| 108 | if [ ${StandAlone} = true ] ; then |
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| 109 | CARD_DIR=${SUBMIT_DIR} |
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| 110 | else |
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| 111 | CARD_DIR=${RUN_DIR} |
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| 112 | IGCM_sys_Get_Master ${SUBMIT_DIR}/config.card ${RUN_DIR_PATH} |
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| 113 | IGCM_sys_Get_Master ${SUBMIT_DIR}/run.card ${RUN_DIR_PATH} |
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| 114 | IGCM_sys_Get_Master ${SUBMIT_DIR}/COMP ${RUN_DIR_PATH} |
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| 115 | IGCM_sys_Get_Master ${SUBMIT_DIR}/POST ${RUN_DIR_PATH} |
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| 116 | fi |
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| 117 | |
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| 118 | #================================== |
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| 119 | # First of all |
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| 120 | # |
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| 121 | # Read libIGCM compatibility version in config.card |
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| 122 | # Read UserChoices section |
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| 123 | # Read Ensemble section |
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| 124 | # Read Post section |
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| 125 | # Define all netcdf output directories |
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| 126 | #================================== |
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| 127 | IGCM_config_CommonConfiguration ${CARD_DIR}/config.card |
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| 128 | |
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| 129 | # ------------------------------------------------------------------ |
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| 130 | # Activate BigBrother so as to supervise this job |
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| 131 | # ------------------------------------------------------------------ |
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| 132 | IGCM_debug_BigBro_Initialize |
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| 133 | |
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| 134 | #================================== |
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| 135 | # Read ListOfComponents section: |
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| 136 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card ListOfComponents |
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| 137 | |
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| 138 | # Create R_FIGR that has been defined by IGCM_config_CommonConfiguration |
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| 139 | IGCM_sys_MkdirArchive ${R_FIGR} |
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| 140 | # |
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| 141 | IGCM_sys_TestDirArchive ${R_FIGR}/MONITORING |
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| 142 | if [ $? = 0 ] ; then |
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| 143 | IGCM_debug_Print 1 "Get MONITORING directory from archive" |
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| 144 | IGCM_sys_Get_Dir ${R_FIGR}/MONITORING ${RUN_DIR} |
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| 145 | else |
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| 146 | IGCM_debug_Print 1 "MONITORING first pass. Nothing has been done before" |
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| 147 | fi |
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| 148 | # -------------------------------------------- |
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| 149 | # Insert your commands between III...III lines |
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| 150 | # and precise produced directories to save |
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| 151 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 152 | |
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| 153 | for comp in ${config_ListOfComponents[*]} ; do |
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| 154 | IGCM_debug_Print 1 "################## Component: ${comp} ######################" |
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| 155 | liste_file_monitoring="" |
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| 156 | IGCM_card_DefineArrayFromOption ${CARD_DIR}/config.card ListOfComponents ${comp} |
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| 157 | eval compname=\${config_ListOfComponents_${comp}[0]} > /dev/null 2>&1 |
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| 158 | |
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| 159 | PATH_monitoring_file="" |
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| 160 | eval monitoring_file=monitoring01_${compname}_\${RESOL_${comp}}.cfg > /dev/null 2>&1 |
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| 161 | if [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/${monitoring_file} ]] ; then |
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| 162 | PATH_monitoring_file=${CARD_DIR}/POST/${monitoring_file} |
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| 163 | elif [[ -d ${CARD_DIR}/POST && -f ${CARD_DIR}/POST/monitoring01_${compname}.cfg ]] ; then |
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| 164 | PATH_monitoring_file=${CARD_DIR}/POST/monitoring01_${compname}.cfg |
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| 165 | elif [ -f ${FER_ATLAS}/${monitoring_file} ] ; then |
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| 166 | PATH_monitoring_file=${FER_ATLAS}/${monitoring_file} |
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| 167 | else |
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| 168 | IGCM_debug_Print 1 "No monitoring file found for this component. Was expecting ${monitoring_file}" |
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| 169 | IGCM_debug_Print 1 "Step to next component" |
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| 170 | continue |
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| 171 | fi |
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| 172 | # |
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| 173 | if [ X${PATH_monitoring_file} != X"" ] ; then |
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| 174 | IGCM_debug_Print 1 "Monitoring file used : ${PATH_monitoring_file}" |
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| 175 | IGCM_debug_Print 1 "Determine which frequency of time series to be used." |
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| 176 | |
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| 177 | FreqTS=$( grep FreqTS ${PATH_monitoring_file} | grep -v \# | awk -F "=" '{print $2}' ) |
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| 178 | if [ X${FreqTS} = X ] ; then |
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| 179 | # Default frequency is MO |
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| 180 | FreqTS=MO |
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| 181 | fi |
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| 182 | |
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| 183 | IGCM_debug_Print 1 "Times series frequency to be used is ${FreqTS}" |
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| 184 | IGCM_debug_Print 1 "Determine which files we need." |
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| 185 | . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive_NoError ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_${FreqTS} |
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| 186 | liste_file_monitoring=$( . monitoring01 -q -l2 --listcommand 'IGCM_sys_RshArchive_NoError ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_${FreqTS} ) |
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| 187 | fi |
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| 188 | # |
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| 189 | if [ ! "X${liste_file_monitoring}" = X ] ; then |
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| 190 | IGCM_sys_Get /l liste_file_monitoring ${RUN_DIR} |
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| 191 | IGCM_debug_Print 1 "monitoring01 -c ${CARD_DIR} -p ${comp} --time -t \"${config_UserChoices_JobName} monitoring\" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} ." |
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| 192 | IGCM_debug_Print 1 "monitoring01 starts ................................................." |
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| 193 | monitoring01 -c ${CARD_DIR} -p ${comp} --time -t "${config_UserChoices_JobName} monitoring" -o ${RUN_DIR}/MONITORING ${PATH_monitoring_file} . |
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| 194 | else |
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| 195 | IGCM_debug_Print 1 "No time series detected by this command :" |
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| 196 | IGCM_debug_Print 1 "monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive_NoError ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_${FreqTS}" |
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| 197 | . monitoring01 -l2 --listcommand 'IGCM_sys_RshArchive_NoError ls' ${PATH_monitoring_file} ${R_SAVE}/${comp}/Analyse/TS_${FreqTS} |
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| 198 | fi |
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| 199 | |
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| 200 | # Now do cleaning before starting with next component |
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| 201 | rm -f ${RUN_DIR}/*nc |
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| 202 | |
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| 203 | done |
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| 204 | |
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| 205 | # IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII |
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| 206 | |
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| 207 | # Save files |
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| 208 | IGCM_sys_Put_Dir MONITORING ${R_FIGR} |
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| 209 | |
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| 210 | # Dods copy |
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| 211 | if [ X${config_Post_DodsCopy} = XTRUE ] ; then |
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| 212 | IGCM_sys_Put_Dods MONITORING |
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| 213 | fi |
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| 214 | |
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| 215 | # Clean RUN_DIR_PATH (necessary for cesium and titane only) |
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| 216 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
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| 217 | |
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| 218 | # ------------------------------------------------------------------ |
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| 219 | # Finalize BigBrother to inform that the jobs end |
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| 220 | # ------------------------------------------------------------------ |
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| 221 | IGCM_debug_BigBro_Finalize |
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