source: CONFIG/IPSLCM/IPSLCM5A/Chistorical/COMP/lmdz.driver @ 3109

Last change on this file since 3109 was 1591, checked in by aclsce, 13 years ago

Bands files must be in read-write mode : in case CumulPeriod?=1,
moved chmod of Bands files after IGCM_sys_Put_Out because an opposite
chmod is done in IGCM_sys_Put_Out.
File size: 15.6 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function LMDZ_sed
4{
5    IGCM_debug_PushStack "LMDZ_sed"
6
7    sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp
8    RET=$?
9    echo "LMDZ_sed : ${1} ${2} ${3}"
10    \mv ${1}.tmp ${1}
11
12    IGCM_debug_PopStack "LMDZ_sed"
13    return $RET
14}
15
16function ATM_Initialize
17{
18    IGCM_debug_PushStack "ATM_Initialize"
19
20    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
21
22    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19
23
24    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
25
26    ##-- Calendar type for LMDZ
27    case ${config_UserChoices_CalendarType} in
28        leap|gregorian)
29            CalendarTypeForLmdz=earth_366d;;
30        noleap)
31            CalendarTypeForLmdz=earth_365d;;
32        360d)
33            CalendarTypeForLmdz=earth_360d;;
34        *)
35            CalendarTypeForLmdz=earth_360d
36    esac
37
38    ##--Frequency purpose ....
39    ##--  Initialisation  ....
40    OK_instan=n
41    OK_journe=n
42    OK_mensuel=n
43    ok_hf=n
44
45    case ${config_UserChoices_PeriodLength} in
46        1Y|1y|1M|1m) OK_mensuel=y ;;
47        5D|5d|1D|1d) OK_journe=y ;;
48    esac
49
50    for frequency in ${config_ATM_WriteFrequency} ; do
51        case ${frequency} in
52            5D|5d|1D|1d) OK_journe=y ;;
53        esac
54        case ${frequency} in
55            HF|hf) 
56                ok_hf=y
57                OK_instan=y
58                ;;
59        esac
60    done
61
62    ## Read LMDZ_NbPeriod_adjust option in lmdz.card
63    IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_NbPeriod_adjust
64    LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust}
65
66    if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
67        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices LMDZ_Bands_file_name
68        LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name}
69    fi
70
71    ##  Read LMDZ_Freq_aero and LMDZ_Length_aero in lmdz.card
72    LMDZ_Freq_aero=${lmdz_UserChoices_LMDZ_Freq_aero}
73    LMDZ_Length_aero=${lmdz_UserChoices_LMDZ_Length_aero}
74
75    ##  Read LMDZ_COSP_monthly  LMDZ_COSP_daily and LMDZ_COSP_hf in lmdz.card
76    LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK}
77    LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly}
78    LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily}
79    LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf}
80
81    ##  Read LMDZ_NMC_monthly  LMDZ_NMC_daily and LMDZ_NMC_hf in lmdz.card
82    LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly}
83    LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily}
84    LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf}
85
86    IGCM_debug_PopStack "ATM_Initialize"
87}
88
89#-----------------------------------------------------------------
90function ATM_Update
91{
92    IGCM_debug_PushStack "ATM_Update"
93
94    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
95    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
96    typeset PathCO2log
97
98    case ${config_UserChoices_PeriodLength} in
99        *Y|*y) 
100               LMDZ_ecrit_mth=30.
101               LMDZ_ecrit_ISCCP=30.
102               LMDZ_periodav=30.
103               if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then
104                  echo Change calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d
105                  exit
106               fi
107               ;;
108        *)
109               LMDZ_ecrit_mth=${PeriodLengthInDays}.
110               LMDZ_ecrit_ISCCP=${PeriodLengthInDays}.
111               LMDZ_periodav=${PeriodLengthInDays}.
112               ;;
113    esac
114
115    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
116    if [ ${CumulPeriod} -eq 1 ] ; then
117        RAZ_DATE=1
118    else
119        RAZ_DATE=0
120    fi
121
122    ## To have more variables in output files for aerosols. Parameters are set in lmdz.card
123    #if [ ${CumulPeriod}%${LMDZ_Freq_aero} -le ${LMDZ_Length_aero} ]; then
124    #   if [ ${CumulPeriod}%${LMDZ_Freq_aero} -ne 0 ]; then
125    #      lev_histmth=4
126    #   else
127    #      lev_histmth=2   
128    #   fi
129    #else
130    #   lev_histmth=2
131    #fi   
132
133    ## algo : For CumulPeriod=1 ;
134    ##        IF NbPeriod_Adjust = 0, Get Bands file directly from server, store it with _0 suffix
135    ##        ELSE LMDZ_adjust=y ; save Bands file on file server ;
136    ##        For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; Get Bands file from server (CumulPeriod-1) ; LMDZ_adjust=y ; save Bands file on file server ;
137    ##        For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from server (CumulPeriod=LMDZ_NbPeriod_adjust 0 to force it) ; Use Bands ;
138
139    if [ ${CumulPeriod} -eq 1 ] ; then
140        if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then
141            IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
142            IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0
143            IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat
144            IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0"
145        fi
146    fi
147
148    LMDZ_adjust=n
149    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y
150
151    RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart
152    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) 
153
154    [ ${CumulPeriod} -gt 1 ] && ( IGCM_sys_Get ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ; IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat )
155
156    ##-- GHG forcing for the current year
157    IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES_1610_2008.txt | awk -F= '{print $2}'`
158#    IPCC_CO2=`grep Annee_${year} CO2_1765_2005.txt | awk -F= '{print $2}'`
159    IPCC_CH4=`grep Annee_${year} CH4_1765_2005.txt | awk -F= '{print $2}'`
160    IPCC_N2O=`grep Annee_${year} N2O_1765_2005.txt | awk -F= '{print $2}'`
161    IPCC_CFC11=`grep Annee_${year} CFC11_1765_2005.txt | awk -F= '{print $2}'`
162    IPCC_CFC12=`grep Annee_${year} CFC12_1765_2005.txt | awk -F= '{print $2}'`
163
164    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ]) ; then
165        ##--Initialization of fluxes to an undefined value at the first run
166        UndefinedValueCo2=-9999
167        InitPeriodCo2=0
168        InitDateBeginCo2=${UndefinedValueCo2}
169        InitYearCo2=$(( ${year} - 1 )) 
170        InitDateEndCo2=${InitYearCo2}1231
171        fCO2_ff=${UndefinedValueCo2} 
172        CO2SBG=${UndefinedValueCo2}
173        CO2LU=${UndefinedValueCo2}
174        CO2MBG=${UndefinedValueCo2}
175        CO2_ppm_prec=${UndefinedValueCo2}
176        # Get the initial value of atmosp. pco2
177        CO2_ppm=${lmdz_UserChoices_co2_init}
178
179        IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
180        IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
181
182        # Save CO2 values in ExeCpuLog variable contents 5 fields
183        echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
184             gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
185                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
186   
187        # Get the path where the log file co2.log is
188        PathCO2log=${SUBMIT_DIR} 
189        # Get Previous line in co2.log
190        PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
191       
192    else
193
194        # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
195        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
196        #SubmitRestartPath=
197        if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ]) ; then
198            IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
199            PathCO2log=${config_ATM_SubmitRestartPath}
200            Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
201            PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
202   
203            IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
204            IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
205   
206            # Save Last Line of control in new co2.log file
207            InitPeriodCo2=0   
208            InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
209            InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
210            fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
211            CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
212            CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
213            CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
214            CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
215            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
216
217            echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
218                  gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
219                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
220        else
221           # Get restart line in co2.log
222           PathCO2log=${SUBMIT_DIR}
223           PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
224           # Get the value of atmosp. pco2 in co2.log
225           CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
226        fi
227
228    fi
229
230    ##-- For historical daily cosp must be output during 1979-2005 period
231    [ ${year} -ge 1979 ] && LMDZ_COSP_daily=y
232
233    ## physiq.def parameters modified from initial physiq_L${RESOL_ATM_Z}
234    LMDZ_sed physiq.def OK_instan   ${OK_instan}
235    LMDZ_sed physiq.def OK_journe   ${OK_journe}
236    LMDZ_sed physiq.def OK_mensuel  ${OK_mensuel}
237    #LMDZ_sed physiq.def lev_histmth ${lev_histmth}
238    LMDZ_sed physiq.def ok_hf       ${ok_hf}
239    LMDZ_sed physiq.def ecrit_mth   ${LMDZ_ecrit_mth}
240    LMDZ_sed physiq.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP}
241    LMDZ_sed physiq.def ok_cosp     ${LMDZ_COSP_OK}
242    LMDZ_sed physiq.def ok_mensuelCOSP  ${LMDZ_COSP_monthly}
243    LMDZ_sed physiq.def ok_journeCOSP   ${LMDZ_COSP_daily}
244    LMDZ_sed physiq.def ok_hfCOSP   ${LMDZ_COSP_hf}
245    LMDZ_sed physiq.def ok_histNMC  "${LMDZ_NMC_monthly}, ${LMDZ_NMC_daily}, ${LMDZ_NMC_hf}"
246    LMDZ_sed physiq.def solaire     ${IPCC_SOLAR}
247#    LMDZ_sed physiq.def co2_ppm     ${IPCC_CO2}
248    LMDZ_sed physiq.def co2_ppm     ${CO2_ppm}
249    LMDZ_sed physiq.def CH4_ppb     ${IPCC_CH4}
250    LMDZ_sed physiq.def N2O_ppb     ${IPCC_N2O}
251    LMDZ_sed physiq.def CFC11_ppt   ${IPCC_CFC11}
252    LMDZ_sed physiq.def CFC12_ppt   ${IPCC_CFC12}
253
254    ## gcm.def parameters : no change since gcm.def_${RESOL_ATM_3D} is used and already modified
255
256    ## run.def parameters
257    LMDZ_sed run.def dayref   ${InitDay}
258    LMDZ_sed run.def anneeref ${InitYear}
259    LMDZ_sed run.def calend   ${CalendarTypeForLmdz}
260    LMDZ_sed run.def nday     ${PeriodLengthInDays}
261    LMDZ_sed run.def raz_date ${RAZ_DATE}
262    LMDZ_sed run.def periodav ${LMDZ_periodav}
263    LMDZ_sed run.def adjust   ${LMDZ_adjust}
264
265    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
266    IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta
267    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
268    if [ ${ByPass_hgardfou_teta} = y ] ; then
269        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
270        IGCM_sys_Mv gcm.def.tmp gcm.def
271        echo
272        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
273        echo
274        cat gcm.def
275        ByPass_hgardfou_teta=n
276        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
277    fi
278
279    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
280    IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats
281    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
282    if [ ${ByPass_hgardfou_mats} = y ] ; then
283        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
284        IGCM_sys_Mv gcm.def.tmp gcm.def
285        echo
286        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
287        echo
288        cat gcm.def
289        ByPass_hgardfou_mats=n
290        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
291    fi
292
293    if ( ${FirstInitialize} ) ; then
294
295        if ( [ "${config_Restarts_OverRule}" = "n" ] && [ "${config_ATM_Restart}" = "n" ] ); then
296            if [ ${DRYRUN} -le 2 ] ; then
297                ##-- suppression of ozone file construction --
298                cp physiq.def physiq.def.save
299                LMDZ_sed physiq.def read_climoz 0
300                IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/.
301                if [ ${DRYRUN} -le 1 ] ; then
302                    ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e
303                    IGCM_sys_Put_Out start.nc    ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc
304                    IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc
305                fi
306                IGCM_sys_Mv physiq.def.save physiq.def
307            else
308                echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated"
309                echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack
310            fi
311        fi
312
313    fi
314
315    IGCM_debug_PopStack "ATM_Update"
316}
317
318#-----------------------------------
319function ATM_Finalize
320{
321    IGCM_debug_PushStack "ATM_Finalize"
322
323    [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_D}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod}
324
325    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
326
327#   get the fossile fuel file :
328    fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
329    echo "Fossil Fuel for historical run  :" ${fCO2_ff}
330
331    # Get the value of ocean carbon flux
332    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
333    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
334    echo "Ocean carbon flux  :" ${CO2MBG}
335   
336    # Get the value of land fluxes
337    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
338    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
339    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
340    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
341    echo "Land carbon flux (NEP)         :" ${CO2SRF}
342    echo "LU flux          (FLUC)        :" ${CO2LU}
343    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
344
345    # Previous CO2
346    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
347    echo "Previous CO2  :" ${CO2_ppm_prec}
348
349    # Formula
350    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
351    echo "New CO2  :" ${CO2_ppm} 
352
353    # Save CO2 values in ExeCpuLog variable contents 5 fields
354    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
355         gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
356                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
357    echo FINALIZE ATM !
358
359    IGCM_debug_PopStack "ATM_Finalize"
360}
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