[583] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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| 3 | function OCE_Initialize |
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| 4 | { |
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| 5 | IGCM_debug_PushStack "OCE_Initialize" |
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| 6 | |
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| 7 | JOB_NAME=${config_UserChoices_JobName} |
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[2117] | 8 | |
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[4616] | 9 | if [ X$ResolOce != X ]; then |
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| 10 | #ResolOce is set in config.card |
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| 11 | RESOL_OCE=${ResolOce} |
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| 12 | IGCM_debug_Print 1 "RESOL_OCE : ${RESOL_OCE}" |
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[583] | 13 | |
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[4616] | 14 | elif [ -f ${SUBMIT_DIR}/../.resol ] ; then |
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| 15 | RESOL_OCE_ICE=$( echo ${RESOL} | awk "-Fx" '{print $1}' ) |
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| 16 | case ${RESOL_OCE_ICE} in |
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| 17 | ( *LIM2* ) SEAICE_MODEL=LIM2 ; LIM_VERSION=2 ;; |
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| 18 | ( *LIM3* ) SEAICE_MODEL=LIM3 ; LIM_VERSION=3 ;; |
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| 19 | ( *CICE* ) SEAICE_MODEL=CICE ;; |
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| 20 | ( * ) SEAICE_MODEL=UNKNOWN ;; |
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| 21 | esac |
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| 22 | RESOL_OCE=$( echo ${RESOL_OCE_ICE} | sed "s/${SEAICE_MODEL}//" ) |
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| 23 | IGCM_debug_Print 1 "RESOL_OCE_ICE : ${RESOL_OCE_ICE}" |
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| 24 | IGCM_debug_Print 1 "RESOL : ${RESOL}" |
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| 25 | IGCM_debug_Print 1 "SEAICE_MODEL : ${SEAICE_MODEL}" |
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| 26 | IGCM_debug_Print 1 "LIM_VERSION : ${LIM_VERSION}" |
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| 27 | IGCM_debug_Print 1 "RESOL_OCE : ${RESOL_OCE}" |
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| 28 | else |
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| 29 | IGCM_debug_Exit "ResolAtm is not set in config.card and the .resol file does not exist." |
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| 30 | IGCM_debug_Verif_Exit |
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| 31 | fi |
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[2109] | 32 | |
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[653] | 33 | # Local function to find namelists parameters |
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[2540] | 34 | #supergrep () { grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" ; } |
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| 35 | supergrep () { grep "^ *$1 *=" $2 | sed -e "s% *\!.*%%" -e "s%^ *$1 *=%%" ; } |
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[583] | 36 | ##--Variables used by OPA -- |
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[2198] | 37 | NAMELIST_OPA_CFG=${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}_cfg |
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[2379] | 38 | IGCM_debug_Print 1 "namelist_cfg : ${NAMELIST_OPA_CFG}" |
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[2198] | 39 | if [ ! -r ${NAMELIST_OPA_CFG} ] ; then |
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[2540] | 40 | IGCM_debug_Exit "${NAMELIST_OPA_CFG} not found" |
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| 41 | IGCM_debug_Verif_Exit |
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[2198] | 42 | fi |
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[2540] | 43 | OPA_RDT=$( supergrep rn_rdt ${NAMELIST_OPA_CFG} ) |
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| 44 | OPA_NN_FSBC=$( supergrep nn_fsbc ${NAMELIST_OPA_CFG} ) |
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| 45 | # |
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| 46 | # OPA_RDT=$( supergrep rn_rdt namelist_cfg ) |
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| 47 | # OPA_NN_FSBC=$( supergrep nn_fsbc namelist_cfg ) |
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[2861] | 48 | (( OPA_NPDT_DAY = 86400 / OPA_RDT )) |
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| 49 | (( OPA_NPDT_YEAR = OPA_NPDT_DAY * 365 )) |
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[2540] | 50 | (( OPA_RDT_SBC = OPA_RDT * OPA_NN_FSBC )) |
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[2267] | 51 | |
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[583] | 52 | # Period Length In Days between DateBegin and first day of calendar 0001 01 01 |
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| 53 | # /!\ Needed by OPA namelist to compute file names /!\ |
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| 54 | (( DaysSinceJC = $( IGCM_date_DaysSinceJC ${DateBegin} ) + 1 )) |
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| 55 | |
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[2379] | 56 | IGCM_debug_Print 1 " " |
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[2540] | 57 | IGCM_debug_Print 1 "OPA_RDT ${OPA_RDT}" |
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| 58 | IGCM_debug_Print 1 "OPA_NN_FSBC ${OPA_NN_FSBC}" |
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| 59 | IGCM_debug_Print 1 "OPA_RDT_SBC ${OPA_RDT_SBC}" |
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[2861] | 60 | IGCM_debug_Print 1 "OPA_NPDT_DAY ${OPA_NPDT_DAY}" |
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| 61 | IGCM_debug_Print 1 "OPA_NPDT_YEAR ${OPA_NPDT_YEAR}" |
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[2540] | 62 | IGCM_debug_Print 1 "DaysSinceJC ${DaysSinceJC}" |
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| 63 | |
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| 64 | ## Check that nn_fsbc is correct compare to coupling frequency |
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| 65 | FreqCoupling=${oasis_UserChoices_FreqCoupling:-86400} |
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[2267] | 66 | |
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[2540] | 67 | ## This informations are used for diaptr, trends and diagap files |
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| 68 | ## only the first frequency is used for this files |
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| 69 | |
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| 70 | IGCM_debug_Print 1 "FreqCoupling ${FreqCoupling}" |
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| 71 | IGCM_debug_Print 1 "OPA_NN_FSBC ${OPA_NN_FSBC}" |
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| 72 | IGCM_debug_Print 1 "OPA_RDT ${OPA_RDT}" |
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| 73 | IGCM_debug_Print 1 "OPA_RDT_SBC ${OPA_RDT_SBC}" |
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| 74 | |
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| 75 | if [[ ${OPA_RDT_SBC} -gt ${FreqCoupling} ]] ; then |
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| 76 | IGCM_debug_Exit "OPA_RDT_SBC=${OPA_RDT_SBC} is greater than FreqCoupling=${FreqCoupling}" |
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| 77 | IGCM_debug_Verif_Exit |
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| 78 | fi |
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[3735] | 79 | |
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[583] | 80 | IGCM_debug_PopStack "OCE_Initialize" |
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[2379] | 81 | |
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[583] | 82 | } |
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| 83 | |
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| 84 | #----------------------------------------------------------------- |
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| 85 | function OCE_Update |
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| 86 | { |
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| 87 | IGCM_debug_PushStack "OCE_Update" |
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[2540] | 88 | |
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[777] | 89 | ##--Write Frequency for iomput |
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[3434] | 90 | ## Differents frequencies are allowed for OCE files |
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[777] | 91 | |
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| 92 | V1D_ENABLE=".FALSE." |
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[2999] | 93 | V5D_ENABLE=".FALSE." |
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[777] | 94 | V1M_ENABLE=".FALSE." |
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| 95 | V1Y_ENABLE=".FALSE." |
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| 96 | |
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| 97 | for frequency in ${config_OCE_WriteFrequency} ; do |
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| 98 | case ${frequency} in |
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[2540] | 99 | ( 1D|1d ) V1D_ENABLE=".TRUE." ;; |
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[2999] | 100 | ( 5D|5d ) V5D_ENABLE=".TRUE." ;; |
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[2540] | 101 | ( 1M|1m ) V1M_ENABLE=".TRUE." ;; |
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| 102 | ( *[yY] ) V1Y_ENABLE=".TRUE." ;; |
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[777] | 103 | esac |
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| 104 | done |
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| 105 | |
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[583] | 106 | # Period Length In Days between DateBegin and first day of calendar 0001 01 01 |
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| 107 | # Needed by OPA namelist to compute correct file names |
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| 108 | (( PeriodDaysSinceJC = $( IGCM_date_DaysSinceJC ${PeriodDateBegin} ) + 1 )) |
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| 109 | |
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| 110 | ##-- Number of time steps updated : the first, the last and the number of time steps |
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[2861] | 111 | (( OPA_NIT000 = ( PeriodDaysSinceJC - DaysSinceJC ) * OPA_NPDT_DAY + 1 )) |
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| 112 | (( OPA_NPDT = PeriodLengthInDays * OPA_NPDT_DAY )) |
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[2540] | 113 | (( OPA_NITEND = OPA_NIT000 + OPA_NPDT - 1)) |
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[583] | 114 | |
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| 115 | ##-- We force one restart file at the end of the trunk |
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[2540] | 116 | OPA_NSTOCK="${OPA_NITEND}" |
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[583] | 117 | |
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[3193] | 118 | |
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| 119 | ##-- Additionnal Restart Option to force reproducibility ; force kt to kt red in restart file |
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| 120 | ## ${opa9_UserChoices_Reproducibility_after_restart} |
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| 121 | |
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| 122 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/opa9.card UserChoices Reproducibility_after_restart |
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| 123 | |
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| 124 | ##-- Restart configuration |
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[4480] | 125 | if ( [ "${opa9_UserChoices_Reproducibility_after_restart}" = "y" ] && [ "${config_OCE_Restart}" = "y" ] ) ; then |
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[3193] | 126 | OPA_LRSTAR=.TRUE. |
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| 127 | OPA_NRSTDT=2 |
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| 128 | #echo "OPA RESTART" |
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[3786] | 129 | IGCM_debug_Print 1 'WARNING : dangerous option for NEMO opa9 pisces lim3' |
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[3193] | 130 | IGCM_debug_Print 1 'Reproducibility_after_Restart forced ie kt forced to kt red in restart file : ' ${opa9_UserChoices_Reproducibility_after_restart} |
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[3786] | 131 | |
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[3193] | 132 | elif ( [ "${CumulPeriod}" -eq 1 ] && [ "${config_OCE_Restart}" = "n" ] ) ; then |
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| 133 | OPA_LRSTAR=.FALSE. |
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| 134 | OPA_NRSTDT=0 |
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| 135 | #echo "NO OPA RESTART" |
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[583] | 136 | elif ( [ "${CumulPeriod}" -eq 1 ] && [ "${config_OCE_Restart}" = "y" ] ) ; then |
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[3193] | 137 | OPA_LRSTAR=.TRUE. |
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| 138 | OPA_NRSTDT=0 |
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| 139 | #echo "OPA RESTART" |
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[583] | 140 | else |
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[3193] | 141 | OPA_LRSTAR=.TRUE. |
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| 142 | OPA_NRSTDT=2 |
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| 143 | #echo "OPA RESTART" |
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[583] | 144 | fi |
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| 145 | |
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[3523] | 146 | if ( [ "${CumulPeriod}" -eq 1 ] && [ "${opa9_UserChoices_Restart_TS_only}" = "y" ] ) ; then |
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[3518] | 147 | OPA_LRSTAR_TS=.TRUE. |
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| 148 | else |
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| 149 | OPA_LRSTAR_TS=.FALSE. |
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| 150 | fi |
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[3193] | 151 | |
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[4446] | 152 | if ( [ "${CumulPeriod}" -eq 1 ] && [ "${opa9_UserChoices_Dynamics_on_ClosedSeas}" = "y" ] ) ; then |
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| 153 | OPA_CLODYN=.FALSE. |
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| 154 | else |
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| 155 | OPA_CLODYN=.TRUE. |
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| 156 | fi |
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| 157 | |
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[3121] | 158 | ##-- Meshmask option. Forced only once. |
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[902] | 159 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/opa9.card UserChoices mesh_mask |
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[819] | 160 | |
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[3121] | 161 | OPA_NMSH=0 |
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[819] | 162 | if [ "${opa9_UserChoices_mesh_mask}" = "y" ]; then |
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[2540] | 163 | OPA_NMSH=1 |
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[902] | 164 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/opa9.card UserChoices mesh_mask "n" |
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[819] | 165 | fi |
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| 166 | |
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[583] | 167 | # nleapy configuration |
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| 168 | case ${config_UserChoices_CalendarType} in |
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[2540] | 169 | ( leap|gregorian) OPA_NLEAPY=1 ;; |
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| 170 | ( noleap ) OPA_NLEAPY=0 ;; |
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| 171 | ( 360d ) OPA_NLEAPY=30 ;; |
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| 172 | ( * ) OPA_NLEAPY=30 ;; |
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[583] | 173 | esac |
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| 174 | |
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[3786] | 175 | if ( [ "${opa9_UserChoices_Reproducibility_after_restart}" = "y" ] ) ; then |
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[3785] | 176 | ##-- choose the right restart file |
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| 177 | NEMO_RESTART_FILE=restartopa.nc |
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| 178 | [ -f restartopa_0000.nc ] && NEMO_RESTART_FILE=restartopa_0000.nc |
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[3775] | 179 | ##-- Getting from restart file the last time step of the run at which we want to re-start |
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[3785] | 180 | NEMO_KT_FROM_RESTART=$(ncdump -v kt ${NEMO_RESTART_FILE}|grep 'kt ='|awk '{print $3}' ) |
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[3798] | 181 | |
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| 182 | if ( [ "${CumulPeriod}" -eq 1 ] ) ; then |
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| 183 | ## Force the date in the restart file to be the last day before the begining of the new run |
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[3908] | 184 | dateendprevious=$( IGCM_date_AddDaysToGregorianDate ${DateBegin} -1 ) |
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| 185 | IGCM_debug_Print 1 "Previous Date ${dateendprevious}" |
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| 186 | IGCM_debug_Print 1 "cmd done to modify NEMO restartfile: ncap2 -s ndastp=${dateendprevious} ${NEMO_RESTART_FILE} tmp.nc" |
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[3835] | 187 | if [ -f restartopa_0000.nc ] ; then |
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| 188 | typeset -Z4 ncpu=0 |
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| 189 | while [ $ncpu -lt ${OCE_PROC_MPI} ] ; do |
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[3908] | 190 | ncap2 -s "ndastp=${dateendprevious}" restartopa_${ncpu}.nc tmp.nc |
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[3835] | 191 | mv tmp.nc restartopa_${ncpu}.nc |
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| 192 | (( ncpu = ncpu + 1 )) |
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| 193 | done |
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| 194 | else |
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[3908] | 195 | ncap2 -s "ndastp=${dateendprevious}" ${NEMO_RESTART_FILE} tmp.nc |
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[3835] | 196 | mv tmp.nc ${NEMO_RESTART_FILE} |
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| 197 | fi |
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[3798] | 198 | ##-- Getting from restart file the "new" restart date of run at which we want to re-start |
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| 199 | NEMO_NDASTP_FROM_RESTART=$(ncdump -v ndastp ${NEMO_RESTART_FILE}|grep 'ndastp ='|awk '{print $3}' ) |
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| 200 | IGCM_debug_Print 1 "NEMO_NDASTP (from Restart) for 1st Period : ${NEMO_NDASTP_FROM_RESTART}" |
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| 201 | |
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| 202 | fi |
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| 203 | |
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[3193] | 204 | (( NEMO_NIT000 = NEMO_KT_FROM_RESTART + 1 )) |
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| 205 | (( NEMO_NITEND = NEMO_KT_FROM_RESTART + OPA_NITEND - OPA_NIT000 + 1 )) |
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| 206 | IGCM_debug_Print 1 "NEMO_NIT000 (from Restart) : ${NEMO_NIT000}" |
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| 207 | IGCM_debug_Print 1 "NEMO_NITEND (from Restart + ... ) : ${NEMO_NITEND}" |
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| 208 | ##-- We force one restart file at the end of the trunk |
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| 209 | OPA_NSTOCK="${NEMO_NITEND}" |
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| 210 | OPA_NIT000="${NEMO_NIT000}" |
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| 211 | OPA_NITEND="${NEMO_NITEND}" |
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| 212 | fi |
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| 213 | |
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[583] | 214 | typeset -r PRECIS=8 |
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[2540] | 215 | NEMO_END=$( echo $( awk "BEGIN { printf \"%0${PRECIS}d\",${OPA_NITEND} }" ) ) |
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[583] | 216 | |
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[3518] | 217 | IGCM_comp_modifyNamelist blocker namelist_cfg cn_exp ${config_UserChoices_JobName} |
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| 218 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_it000 ${OPA_NIT000} |
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| 219 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_itend ${OPA_NITEND} |
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| 220 | IGCM_comp_modifyNamelist blocker namelist_cfg ln_rstart ${OPA_LRSTAR} |
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| 221 | IGCM_comp_modifyNamelist blocker namelist_cfg ln_rstart_ts ${OPA_LRSTAR_TS} |
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[4446] | 222 | IGCM_comp_modifyNamelist blocker namelist_cfg ln_clodyn ${OPA_CLODYN} |
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[3518] | 223 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_stock ${OPA_NSTOCK} |
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| 224 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_rstctl ${OPA_NRSTDT} |
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| 225 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_date0 ${PeriodDateBegin} |
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| 226 | IGCM_comp_modifyNamelist nonblocker namelist_cfg nn_msh ${OPA_NMSH} |
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[2625] | 227 | IGCM_comp_modifyNamelist nonblocker namelist_cfg nn_rnf_depth_file ${OPA_NMSH} |
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[3518] | 228 | IGCM_comp_modifyNamelist blocker namelist_cfg nn_leapy ${OPA_NLEAPY} |
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[2540] | 229 | |
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| 230 | # Update iodef.xml |
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[583] | 231 | |
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[2999] | 232 | IGCM_debug_Print 1 'Informations into iodef.xml : V1D_ENABLE V5D_ENABLE V1M_ENABLE V1Y_ENABLE ' |
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| 233 | IGCM_debug_Print 1 ${V1D_ENABLE} ${V5D_ENABLE} ${V1M_ENABLE} ${V1Y_ENABLE} |
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[1021] | 234 | |
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[3491] | 235 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1d_opa enabled ${V1D_ENABLE} |
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| 236 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 5d_opa enabled ${V5D_ENABLE} |
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| 237 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1m_opa enabled ${V1M_ENABLE} |
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| 238 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1y_opa enabled ${V1Y_ENABLE} |
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[3490] | 239 | |
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[3634] | 240 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1d_opa output_level ${opa9_UserChoices_OutputLevel} |
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| 241 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 5d_opa output_level ${opa9_UserChoices_OutputLevel} |
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| 242 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1m_opa output_level ${opa9_UserChoices_OutputLevel} |
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| 243 | IGCM_comp_modifyXmlFile nonblocker file_def_nemo-opa.xml 1y_opa output_level ${opa9_UserChoices_OutputLevel} |
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| 244 | |
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| 245 | |
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[4295] | 246 | # Update reference year/month/day |
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| 247 | IGCM_date_GetYearMonthDay ${DateBegin} iyear imonth iday |
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| 248 | IGCM_comp_modifyXmlFile force context_nemo.xml ref_year NONE ${iyear} |
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| 249 | IGCM_comp_modifyXmlFile force context_nemo.xml ref_month NONE ${imonth} |
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| 250 | IGCM_comp_modifyXmlFile force context_nemo.xml ref_day NONE ${iday} |
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| 251 | |
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| 252 | |
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[3785] | 253 | # for MPP and switch to different number of procs for NEMO. We need to suppres restartopa the second period, if restartopa_0000 exist |
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[1436] | 254 | # same thing for restart_trc and restart_ice_in |
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| 255 | |
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| 256 | for restartfilenemo in restartopa restart_trc restart_ice_in ; do |
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| 257 | [ -f ${restartfilenemo}.nc ] && [ -f ${restartfilenemo}_0000.nc ] && IGCM_sys_Rm -f ${restartfilenemo}.nc |
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| 258 | done |
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| 259 | |
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[2270] | 260 | # Add include of nemo context in iodef.xml |
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| 261 | # In iodef.xml add on next line after "COMPONENT CONTEXT" |
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| 262 | # <context id="nemo" src="./context_nemo.xml"/> |
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| 263 | echo '<context id="nemo" src="./context_nemo.xml"/>' > add.tmp |
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[3476] | 264 | if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then |
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| 265 | echo '<context id="nemo" src="./ping_nemo.xml"/>' >> add.tmp |
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| 266 | echo '<context id="nemo" src="./dr2xml_opa9.xml"/>' >> add.tmp |
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| 267 | fi |
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[2270] | 268 | cp iodef.xml iodef.xml.tmp |
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| 269 | sed -e "/COMPONENT CONTEXT/r add.tmp" \ |
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| 270 | iodef.xml.tmp > iodef.xml |
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| 271 | rm iodef.xml.tmp add.tmp |
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| 272 | |
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[2833] | 273 | #Long Name as global attribute (if LongName is not empty) |
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| 274 | if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then |
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[2876] | 275 | listfile=$(ls file_def_nemo*.xml) |
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[2833] | 276 | echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp |
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| 277 | for file in ${listfile} |
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| 278 | do |
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| 279 | cp ${file} ${file}.tmp |
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| 280 | sed -e "/<file id/r add.tmp" \ |
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| 281 | ${file}.tmp > ${file} |
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| 282 | rm ${file}.tmp |
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| 283 | done |
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| 284 | rm add.tmp |
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| 285 | fi |
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| 286 | |
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[4296] | 287 | #Compression level (if CompressionLevel is not empty) |
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| 288 | if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then |
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[4297] | 289 | echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel} |
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| 290 | listfile=$(ls file_def_nemo*.xml) |
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| 291 | for file in ${listfile} |
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| 292 | do |
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| 293 | sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file} |
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| 294 | done |
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[4296] | 295 | fi |
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| 296 | |
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| 297 | |
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[583] | 298 | IGCM_debug_PopStack "OCE_Update" |
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| 299 | } |
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| 300 | |
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| 301 | #----------------------------------- |
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| 302 | function OCE_Finalize |
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| 303 | { |
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| 304 | IGCM_debug_PushStack "OCE_Finalize" |
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| 305 | |
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[2379] | 306 | IGCM_debug_Print 1 FINALIZE OCE !!! |
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[583] | 307 | |
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| 308 | IGCM_debug_PopStack "OCE_Finalize" |
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| 309 | } |
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