#!/bin/bash #set -vx # Default options # # # date #### 1 Set up the compiling options #### Define some directories submitdir=$( pwd ) modipsl=$submitdir/../.. arch_path=$submitdir/ARCH mysrc_path=$submitdir/SOURCES #### Set default options # Atmospheric resolution, for LMDZ/ORCHIDEE in regular mode resol_atm=144x142x79 # Oceanic resolution, for NEMO (ORCA2/ORCA1/ORCA025) resol_oce=ORCA1 # Version of ice model lim2/lim3 icemodel=lim3 # Coupled with ocean biogeochemistry (y/n) oceanbio=y # Version ESM CO2: CO2 interactif ocean/atmosphere (y/n) esmco2=n # Version ESM AER : Aer interactif chemistry / atmosphere (y/n) esmaer=n # Also compile ce0l subprogram to LMDZ (y/n) ce0l=n # choose radiative code compilation option rad=rrtm opt_rad="" # choose inca chemistry optchimie=AER # Optimization mode # optmode=prod/dev/debug optmode=prod # fcm_arch fcm_arch=default # Default values to be overritten parallel=mpi_omp export fcm_arch parallel xios full_flag="" full_nemo=n full_inca="" full_xios="" full_lmdz="" full_orch="" # Output text file for compilation of each component datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` outfile=$submitdir/out_compile_ipslcm6.$datestr echo > $outfile echo; echo "Text output from compilation will be stored in file out_compile_ipslcm6.$datestr"; echo #### Read arguments # Loop over all arguments to modify default set up while (($# > 0)) ; do case $1 in "-h") cat <> $outfile echo " resol_atm=${resol_atm}, resol_oce=${resol_oce}, icemodel=${icemodel}, oceanbio=${oceanbio}" >> $outfile echo " esmco2=${esmco2}, esmchem=${esmchem}, chemistry=${optchimie}" >> $outfile echo " ce0l=${ce0l}" >> $outfile echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo," >> $outfile echo >> $outfile ### Read host dependent default values ### These variables will not be changed if they were set as argument ###./host.sh $host # Later : Following lines should be set in host.sh file # begin host.sh if [ $fcm_arch == default ] ; then # Find out current host and source specific paths and commands for the host case $( hostname -s ) in jean-zay*) fcm_arch=X64_JEANZAY;; irene170|irene171|irene190|irene191|irene192|irene193) fcm_arch=X64_IRENE;; irene172|irene173|irene194|irene195) fcm_arch=X64_IRENE-AMD;; asterix*|obelix*) fcm_arch=ifort_LSCE if [ "${parallel}" == "mpi_omp" ] ; then echo "Warning!! Currently at Obelix hybrid mode is not possible." echo " Option -parallel mpi_omp is now changed to -parallel mpi" echo "" parallel=mpi else echo "You used -parallel" $parallel fi ;; ciclad*|climserv*|loholt*|camelot*) fcm_arch=ifort_CICLAD;; *) echo Current host is not known. You must use option -arch to specify which architecuture files to use. echo Exit now. exit esac fi # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. if [ -f ARCH/arch-${fcm_arch}.env ] ; then echo >> $outfile echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." echo "Note that this new environement might be kept after compilation." echo "If this is the case, source again your personal environment after compilation. " echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile module list >> $outfile 2>&1 # Get initial svn version svn_version=$(module list -t | grep subversion) # Make a link to this file, to be used also in config.card rm -f ARCH/arch.env ln -s arch-${fcm_arch}.env ARCH/arch.env # Source the file source ARCH/arch.env >> $outfile 2>&1 if [ X$svn_version != X ] ; then # Put back initial version of svn module load ${svn_version} fi echo >> $outfile echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile module list >> $outfile 2>&1 fi #### 2 Do the compilation ## 2.1 Compile ioipsl cd $modipsl/modeles/IOIPSL echo; echo "NOW COMPILE IOIPSL" echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile # Check if compilation with fcm is included in IOIPSL if [ ! -f makeioipsl_fcm ] ; then echo "The file makeiopsl_fcm do not exist. Probably this is not the right version of IOIPSL." echo "Version of IOIPSL with fcm compilation is needed to compile with this script. Stop now." exit fi echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 # Test if compiling succeded if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" exit fi ## 2.2 Compile oasis3-mct cd $modipsl/oasis3-mct/util/make_dir echo; echo "NOW COMPILE OASIS3-MCT" echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc echo make -f TopMakefileOasis3 >> $outfile make -f TopMakefileOasis3 >> $outfile 2>&1 ## 2.3 Compile xios cd $modipsl/modeles/XIOS echo; echo "NOW COMPILE XIOS" echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile echo ./make_xios --use_oasis oasis3_mct --$optmode --arch $fcm_arch --arch_path $arch_path --job 4 $full_xios >> $outfile ./make_xios --use_oasis oasis3_mct --$optmode --arch $fcm_arch --arch_path $arch_path --job 4 $full_xios >> $outfile 2>&1 # Test if compiling succeded if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" exit fi # Move executables to modipsl/bin if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe else echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" exit fi ## 2.4 Compile orchidee cd $modipsl/modeles/ORCHIDEE echo; echo "NOW COMPILE ORCHIDEE" echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile # Check if the compilation of ORCHIDEE was previsouly interupted prematured. # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm # to ask question and wait for interactivly answer from the user. if [ -f build/fcm.bld.lock ] ; then echo >> $outfile echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile echo " The file will now be removed. " >> $outfile echo >> $outfile rm -f build/fcm.bld.lock fi echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1 # Test if compiling finished if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" exit fi ## 2.5 Compile NEMO nemo_root=$modipsl/modeles/NEMOGCM/CONFIG if [ ${icemodel} == lim2 ] ; then addkeys="key_lim2_vp key_diahth key_oasis3" delkeys="key_nosignedzero key_mpp_rep" else addkeys="key_top key_pisces key_age key_cfc key_cpl_carbon_cycle key_gas key_oasis3" if [ ${oceanbio} == y ] ; then if [ ${esmco2} == y ] ; then if [ ${esmchem} == y ] ; then delkeys="key_nosignedzero key_mpp_rep" else delkeys="key_nosignedzero key_mpp_rep" fi else delkeys="key_nosignedzero key_mpp_rep key_cpl_carbon_cycle key_gas" fi else delkeys="key_nosignedzero key_mpp_rep key_top key_pisces key_cfc key_age key_cpl_carbon_cycle key_gas" fi fi if [ ${oceanbio} == n ] ; then echo; echo "NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and without PISCES" echo >> $outfile ; echo " NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and without PISCES" >> $outfile else echo; echo "NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and PISCES" echo >> $outfile ; echo " NOW COMPILE NEMO. Resolution = ${resol_oce} with icemodel ${icemodel} and PISCES" >> $outfile fi echo >> $outfile ; echo cd $nemo_root >> $outfile echo >> $outfile ; echo cp $modipsl/config/IPSLCM6/SOURCES/NEMO/arch-${fcm_arch}.fcm ../ARCH/. >> $outfile echo >> $outfile cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm ../ARCH/. if [ ${resol_oce} == ORCA2 ] ; then cfg_wrk=ORCA2_LIM_PISCES ; fi if [ ${resol_oce} == ORCA1 ] ; then cfg_wrk=ORCA1_LIM3_PISCES ; fi if [ ${resol_oce} == ORCA025 ] ; then cfg_wrk=ORCA025_LIM3_PISCES ; fi echo cp $modipsl/config/IPSLCM6/SOURCES/NEMO/*.*90 $nemo_root/$cfg_wrk/MY_SRC/ >> $outfile echo >> $outfile cp $mysrc_path/NEMO/*.*90 $nemo_root/$cfg_wrk/MY_SRC/ if [ $full_nemo == y ] ; then # To make a full compilation, first make a clean to remove all files produced during previous compilation echo ./makenemo -m ${fcm_arch} -n $cfg_wrk clean >> $outfile echo >> $outfile ./makenemo -m ${fcm_arch} -n $cfg_wrk clean >> $outfile 2>&1 fi echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys" del_key "$delkeys" >> $outfile echo >> $outfile ./makenemo -m ${fcm_arch} -n $cfg_wrk -j16 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1 # Test if compiling finished if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP" exit fi echo >> $outfile echo "Move nemo executable to modipsl/bin" >> $outfile echo ls -lrt $nemo_root/$cfg_wrk/BLD/bin >> $outfile ls -lrt $nemo_root/$cfg_wrk/BLD/bin >> $outfile echo >> $outfile if [ -f $nemo_root/$cfg_wrk/BLD/bin/nemo.exe ] ; then if [ ${esmco2} == y ] && [ ${esmchem} == n ] ; then mv $nemo_root/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa.ESMCO2_${resol_oce}_${optmode} elif [ ${esmco2} == y ] && [ ${esmchem} == y ] ; then mv $nemo_root/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa.ESMCO2AER_${resol_oce}_${optmode} else mv $nemo_root/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${resol_oce}_${optmode} fi fi ## 2.6 Compile LMDZ for regular latlon configuration # If necessary compile INCA modele with AER configuration if [ ${esmchem} == y ] ; then cd $modipsl/modeles/INCA #compile INCA regulat lat_lon chimie library echo; echo "NOW COMPILE INCA ${optchimie} on resolution = ${resol_atm}" echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag $full_inca -cplocninca >> $outfile ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag $full_inca -cplocninca >> $outfile 2>&1 # Test if compiling finished if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" exit fi echo "Move inca.dat modipsl/bin" if [[ -f $modipsl/modeles/INCA/SIMULATIONS/$optchimie/inca.dat ]] ; then mv $modipsl/modeles/INCA/SIMULATIONS/$optchimie/inca.dat $modipsl/bin/inca_${optchimie}.dat ; else echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" exit fi echo "Move tracer.def to modipsl/bin" if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ; fi fi # Compile LMDZ regular lat-lon executable cd $modipsl/modeles/LMDZ echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile # Temporary use of SOURCES/LMDZ to handle modifications needed by LMDZ rev 4515 cp $mysrc_path/LMDZ/*.*90 libf/phylmd/. # Check if the compilation of LMDZ was previsouly interupted prematured. # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm # to ask question and wait for interactivly answer from the user. if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then echo >> $outfile echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile echo " The files dimension.h and .lock will now be removed. " >> $outfile echo >> $outfile rm -f libf/grid/dimensions.h rm -f .lock fi # Need to define the proper option for radiative code compilation. By default, we use rrtm case $rad in oldrad) opt_rad="" ;; rrtm) opt_rad="-rad rrtm" ;; ecrad) opt_rad="-rad ecrad" ;; *) echo Only oldrad rrtm ecrad for rad option ; exit esac if [ ${esmchem} == n ] ; then echo ./makelmdz_fcm -d ${resol_atm} -c OMCT -cosp true $opt_rad -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile ./makelmdz_fcm -d ${resol_atm} -c OMCT -cosp true $opt_rad -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 else #in esm aer case add chemistry option to lmdz compilation echo ./makelmdz_fcm -d ${resol_atm} -c OMCT -cosp true $opt_rad -rrtm true -$optmode -mem -parallel $parallel -chimie INCA -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile ./makelmdz_fcm -d ${resol_atm} -c OMCT -cosp true $opt_rad -rrtm true -$optmode -mem -parallel $parallel -chimie INCA -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 fi # Test if compiling finished if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" exit fi # Move executables to modipsl/bin folder echo >> $outfile echo "Move gcm.e executable to modipsl/bin" >> $outfile echo ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile echo >> $outfile suffix=_${resol_atm}_phylmd suffix=${suffix}_${rad} suffix=${suffix}_para_mem_orch_couple if [ ${esmchem} == n ] ; then suffix=${suffix}.e else suffix=${suffix}_inca.e fi echo gcm suffix = $suffix if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then if [ ${esmchem} == n ] ; then mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${optmode}.e else mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${optmode}_${optchimie}.e fi else echo "ERROR gcm${suffix} executable does not exist." echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" exit fi # Compile ce0l initialization program for LMDZ regular lat-lon exectuable if [ $ce0l == y ] ; then echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile echo ./makelmdz_fcm -d ${resol_atm} $opt_rad -$optmode -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile ./makelmdz_fcm -d ${resol_atm} $opt_rad -$optmode -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 # 1er aout - remove xios from ce0l compilation # # echo ./makelmdz_fcm -d ${resol_atm} $opt_rad -$optmode -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile # ./makelmdz_fcm -d ${resol_atm} $opt_rad -$optmode -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 # Test if compiling finished if [[ $? != 0 ]] ; then echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" exit fi # Move executables to modipsl/bin folder echo >> $outfile echo "Move ce0l.e executable to modipsl/bin" >> $outfile echo ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile echo >> $outfile suffix=_${resol_atm}_phylmd_seq.e if [ $lmdzsvn -ge 4186 ] ; then suffix=_${resol_atm}_phylmd_${rad}_seq.e ; fi echo ce0l suffix = $suffix if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e else echo "ERROR ce0l${suffix} executable does not exist." echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" exit fi fi echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile echo ls -lrt modipsl/bin >> $outfile ls -lrt $modipsl/bin >> $outfile echo; echo "ALL COMPILING FINISHED" ; echo echo "Executables are found in modipsl/bin" echo "Check that executable names correspond with the name set in config.card before launching the job" echo ls -lrt modipsl/bin ls -lrt $modipsl/bin date exit