[396] | 1 | #!/bin/ksh |
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| 2 | #----------------------------------------------------------------- |
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[894] | 3 | function LMDZ_sed |
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| 4 | { |
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[1690] | 5 | # Usage : LMDZ_sed filedef var_name myvalue |
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| 6 | # In file filedef modify the line containing var_name=xxx into var_name=myvalue |
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[894] | 7 | IGCM_debug_PushStack "LMDZ_sed" |
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[1783] | 8 | |
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| 9 | # Test if the fichier exist |
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| 10 | if [ ! -f ${1} ] ; then |
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| 11 | echo "WARNING : ${1} file does not exist. Following will not be done : LMDZ_sed : ${1} ${2} ${3}" |
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[2209] | 12 | IGCM_debug_PopStack "LMDZ_sed" |
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[1783] | 13 | return |
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| 14 | fi |
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[894] | 15 | |
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[911] | 16 | sed -e "s/^${2}\ *=.*/${2}= ${3}/" ${1} > ${1}.tmp |
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[894] | 17 | RET=$? |
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| 18 | echo "LMDZ_sed : ${1} ${2} ${3}" |
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| 19 | \mv ${1}.tmp ${1} |
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| 20 | |
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| 21 | IGCM_debug_PopStack "LMDZ_sed" |
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| 22 | return $RET |
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| 23 | } |
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[2275] | 24 | |
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[1690] | 25 | function LMDZ_sed_default |
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| 26 | { |
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| 27 | # Usage : LMDZ_sed_default filedef var_name |
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| 28 | # In file filedef modify the line "var_name=xxx DEFAULT= myvalue" |
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| 29 | # into "var_name=myvalue" |
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| 30 | IGCM_debug_PushStack "LMDZ_sed_default" |
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[894] | 31 | |
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[1690] | 32 | DefValue=$( grep ${2} ${1} | awk -F"DEFAULT.=*" '{print $2}') |
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| 33 | |
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| 34 | LMDZ_sed ${1} ${2} $DefValue |
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| 35 | IGCM_debug_PopStack "LMDZ_sed_default" |
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| 36 | return $RET |
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| 37 | } |
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| 38 | |
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[396] | 39 | function ATM_Initialize |
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| 40 | { |
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| 41 | IGCM_debug_PushStack "ATM_Initialize" |
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| 42 | |
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[671] | 43 | RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}') |
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[396] | 44 | |
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[2275] | 45 | [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39 |
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[396] | 46 | |
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[659] | 47 | RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' ) |
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[1802] | 48 | RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' ) |
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| 49 | RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' ) |
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| 50 | RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}" |
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[2275] | 51 | FreqCoupling=${oasis_UserChoices_FreqCoupling:-86400} |
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[649] | 52 | |
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[1923] | 53 | ##-- Calendar type for LMDZ and create_etat0_limit |
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[697] | 54 | case ${config_UserChoices_CalendarType} in |
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| 55 | leap|gregorian) |
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[1923] | 56 | CalendarTypeForLmdz=earth_366d |
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| 57 | CalendarTypeForCreate=gregorian;; |
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[697] | 58 | noleap) |
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[1923] | 59 | CalendarTypeForLmdz=earth_365d |
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| 60 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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[697] | 61 | 360d) |
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[1923] | 62 | CalendarTypeForLmdz=earth_360d |
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| 63 | CalendarTypeForCreate=${CalendarTypeForLmdz};; |
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[697] | 64 | *) |
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| 65 | CalendarTypeForLmdz=earth_360d |
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[1923] | 66 | CalendarTypeForCreate=${CalendarTypeForLmdz} |
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[697] | 67 | esac |
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| 68 | |
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[1541] | 69 | ##- LMDZ physics version |
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| 70 | ## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) |
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| 71 | if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then |
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| 72 | LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics} |
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| 73 | else |
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| 74 | LMDZ_Physics=AP |
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| 75 | fi |
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| 76 | echo LMDZ physics version : ${LMDZ_Physics} |
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| 77 | |
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[1643] | 78 | ##- Create_etat0_limit version |
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[1782] | 79 | ## Define variable CREATE only if it is set in lmdz.card section UserChoices. |
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| 80 | ## This variable is only used in lmdz.card to choose input files. |
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| 81 | if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then |
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| 82 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE |
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| 83 | CREATE=${lmdz_UserChoices_CREATE} |
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| 84 | echo create_etat0_limit version : ${CREATE} |
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| 85 | fi |
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[1643] | 86 | |
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[1782] | 87 | |
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[1550] | 88 | ## - LMDZ choice of config.def file |
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| 89 | ## ConfType must be set in lmdz.card |
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| 90 | ConfType=${lmdz_UserChoices_ConfType} |
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[1541] | 91 | |
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[1550] | 92 | ##- LMDZ output level, to be set in lmdz.card |
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| 93 | if [ X${lmdz_UserChoices_OutLevel} = X ] ; then |
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| 94 | # OutLevel is not set. Take default value low. |
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| 95 | OutLevel=low |
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| 96 | else |
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| 97 | OutLevel=${lmdz_UserChoices_OutLevel} |
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| 98 | fi |
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| 99 | |
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[1539] | 100 | ##-- Output frequency purpose .... |
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[396] | 101 | ##-- Initialisation .... |
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[1539] | 102 | ok_mensuel=n |
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| 103 | ok_journe=n |
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[396] | 104 | ok_hf=n |
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[1539] | 105 | ok_hf3h=n |
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| 106 | ok_hf3hm=n |
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| 107 | ok_stn=n |
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[396] | 108 | |
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| 109 | case ${config_UserChoices_PeriodLength} in |
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[1539] | 110 | 1Y|1y|1M|1m) ok_mensuel=y ;; |
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| 111 | 5D|5d|1D|1d) ok_journe=y ;; |
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[396] | 112 | esac |
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| 113 | |
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| 114 | for frequency in ${config_ATM_WriteFrequency} ; do |
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| 115 | case ${frequency} in |
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[1539] | 116 | 1M|1m) ok_mensuel=y ;; |
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[396] | 117 | esac |
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| 118 | case ${frequency} in |
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[1539] | 119 | 5D|5d|1D|1d) ok_journe=y ;; |
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| 120 | esac |
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| 121 | case ${frequency} in |
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[396] | 122 | HF|hf) ok_hf=y ;; |
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| 123 | esac |
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[1539] | 124 | case ${frequency} in |
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| 125 | HF3h|hf3h) ok_hf3h=y ;; |
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| 126 | esac |
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| 127 | case ${frequency} in |
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| 128 | HF3hm|hf3hm) ok_hf3hm=y ;; |
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| 129 | esac |
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| 130 | case ${frequency} in |
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| 131 | STN|stn) ok_stn=y ;; |
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| 132 | esac |
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[396] | 133 | done |
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| 134 | |
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[902] | 135 | ## Read LMDZ_NbPeriod_adjust option in lmdz.card |
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[1688] | 136 | if [ X"${lmdz_UserChoices_LMDZ_NbPeriod_adjust}" = X"" ] ; then |
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| 137 | # The variable is not in lmdz.card, set default value |
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| 138 | LMDZ_NbPeriod_adjust=0 |
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| 139 | else |
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| 140 | LMDZ_NbPeriod_adjust=${lmdz_UserChoices_LMDZ_NbPeriod_adjust} |
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| 141 | fi |
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[396] | 142 | |
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[815] | 143 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1688] | 144 | LMDZ_Bands_file_name=${lmdz_UserChoices_LMDZ_Bands_file_name} |
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[815] | 145 | fi |
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| 146 | |
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[912] | 147 | |
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[1783] | 148 | ## Read LMDZ_COSP_OK in lmdz.card |
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| 149 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ] ; then |
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| 150 | LMDZ_COSP_OK=${lmdz_UserChoices_LMDZ_COSP_OK} |
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| 151 | else |
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| 152 | LMDZ_COSP_OK=n |
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| 153 | fi |
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| 154 | ## Read LMDZ_COSP_monthly in lmdz.card |
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| 155 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_monthly} = X ] ; then |
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| 156 | LMDZ_COSP_monthly=${lmdz_UserChoices_LMDZ_COSP_monthly} |
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| 157 | else |
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| 158 | LMDZ_COSP_monthly=n |
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| 159 | fi |
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| 160 | ## Read LMDZ_COSP_daily in lmdz.card |
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| 161 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_daily} = X ] ; then |
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| 162 | LMDZ_COSP_daily=${lmdz_UserChoices_LMDZ_COSP_daily} |
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| 163 | else |
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| 164 | LMDZ_COSP_daily=n |
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| 165 | fi |
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| 166 | ## Read LMDZ_COSP_hf in lmdz.card |
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| 167 | if [ ! X${lmdz_UserChoices_LMDZ_COSP_hf} = X ] ; then |
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| 168 | LMDZ_COSP_hf=${lmdz_UserChoices_LMDZ_COSP_hf} |
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| 169 | else |
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| 170 | LMDZ_COSP_hf=n |
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| 171 | fi |
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[1000] | 172 | |
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[1783] | 173 | ## Read LMDZ_NMC_monthly in lmdz.card |
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| 174 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_monthly} = X ] ; then |
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| 175 | LMDZ_NMC_monthly=${lmdz_UserChoices_LMDZ_NMC_monthly} |
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| 176 | else |
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| 177 | LMDZ_NMC_monthly=n |
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| 178 | fi |
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[1000] | 179 | |
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[1783] | 180 | ## Read LMDZ_NMC_daily in lmdz.card |
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| 181 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_daily} = X ] ; then |
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| 182 | LMDZ_NMC_daily=${lmdz_UserChoices_LMDZ_NMC_daily} |
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| 183 | else |
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| 184 | LMDZ_NMC_daily=n |
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| 185 | fi |
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| 186 | |
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| 187 | ## Read LMDZ_NMC_hf in lmdz.card |
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| 188 | if [ ! X${lmdz_UserChoices_LMDZ_NMC_hf} = X ] ; then |
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| 189 | LMDZ_NMC_hf=${lmdz_UserChoices_LMDZ_NMC_hf} |
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| 190 | else |
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| 191 | LMDZ_NMC_hf=n |
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| 192 | fi |
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| 193 | |
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| 194 | |
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[396] | 195 | IGCM_debug_PopStack "ATM_Initialize" |
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| 196 | } |
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| 197 | |
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| 198 | #----------------------------------------------------------------- |
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| 199 | function ATM_Update |
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| 200 | { |
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| 201 | IGCM_debug_PushStack "ATM_Update" |
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| 202 | |
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[1537] | 203 | |
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[749] | 204 | case ${config_UserChoices_PeriodLength} in |
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| 205 | *Y|*y) |
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| 206 | LMDZ_ecrit_ISCCP=30. |
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| 207 | LMDZ_periodav=30. |
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[755] | 208 | if [ "${config_UserChoices_CalendarType}" != "360d" ] ; then |
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[1649] | 209 | echo Do not consider following warning if your running create_etat0_limit : |
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[1650] | 210 | echo WARNING !!! For lmdz : calendartype in config.card. PeriodLength=1Y allowed only for CalendarType=360d |
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[1649] | 211 | fi |
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[749] | 212 | ;; |
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| 213 | *) |
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| 214 | LMDZ_ecrit_ISCCP=${PeriodLengthInDays}. |
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| 215 | LMDZ_periodav=${PeriodLengthInDays}. |
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| 216 | ;; |
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| 217 | esac |
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[1546] | 218 | |
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[396] | 219 | ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def |
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| 220 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 221 | RAZ_DATE=1 |
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| 222 | else |
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| 223 | RAZ_DATE=0 |
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| 224 | fi |
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| 225 | |
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[1892] | 226 | ## Algorithme for special treatment for Bands_xxx file |
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| 227 | ## For CumulPeriod=1 ; |
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| 228 | ## IF NbPeriod_Adjust = 0 ; set LMDZ_adjust=n |
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| 229 | ## IF LMDZ_Bands_file_name was given in lmdz.card THEN Get Bands file directly from server. Store it later with _0 suffix. |
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| 230 | ## IF no LMDZ_Bands_file_name was given, start without Bands file. Store it later with _0 suffix. |
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| 231 | ## ELSE set LMDZ_adjust=y ; start without Bands file ; Store it later in PARAM/ directory in submit directory with suffix _1 ; |
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| 232 | ## |
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| 233 | ## For CumulPeriod=2 to LMDZ_NbPeriod_adjust ; |
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| 234 | ## Get Bands file from PARAM/ in submit directory (CumulPeriod-1) ; set LMDZ_adjust=y ; Store Bands file in PARAM/ ; |
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| 235 | ## |
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| 236 | ## For CumulPeriod > LMDZ_NbPeriod_adjust ; LMDZ_adjust=n ; Get Bands file from PARAM/ ; Do not store ; |
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[815] | 237 | |
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| 238 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 239 | if [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
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[1778] | 240 | if [ ! X${LMDZ_Bands_file_name} = X ] ; then |
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[1688] | 241 | IGCM_sys_Get ${LMDZ_Bands_file_name} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 242 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 243 | IGCM_debug_Print 1 "Bands file forced to ${LMDZ_Bands_file_name} and stored in ${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0" |
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| 244 | fi |
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[815] | 245 | fi |
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| 246 | fi |
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| 247 | |
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[743] | 248 | LMDZ_adjust=n |
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| 249 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && LMDZ_adjust=y |
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| 250 | |
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[815] | 251 | RefPeriod=${LMDZ_NbPeriod_adjust} #0 to use a Bands file from Restart |
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| 252 | [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] && (( RefPeriod = ${CumulPeriod} - 1 )) |
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[743] | 253 | |
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[1897] | 254 | # Get Bands file from PARAM directory if file exist |
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[1998] | 255 | if ( [ ${CumulPeriod} -gt 1 ] && [ -f ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} ] ) ; then |
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[1894] | 256 | IGCM_sys_Cp ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${RefPeriod} Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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[1892] | 257 | IGCM_sys_Chmod u+w Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat |
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| 258 | fi |
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[743] | 259 | |
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[1535] | 260 | ##-- GHG forcing : |
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[1546] | 261 | ## If forcing file exist in run directory, read values for the current year and modify config.def |
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[1535] | 262 | if [ -f SOLARANDVOLCANOES.txt ] ; then |
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| 263 | IPCC_SOLAR=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'` |
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[1546] | 264 | LMDZ_sed config.def solaire ${IPCC_SOLAR} |
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[1690] | 265 | else |
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| 266 | LMDZ_sed_default config.def solaire |
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[1535] | 267 | fi |
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| 268 | if [ -f CO2.txt ] ; then |
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| 269 | IPCC_CO2=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'` |
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[1546] | 270 | LMDZ_sed config.def co2_ppm ${IPCC_CO2} |
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[1690] | 271 | else |
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| 272 | LMDZ_sed_default config.def co2_ppm |
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[1535] | 273 | fi |
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[1690] | 274 | |
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| 275 | |
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[1535] | 276 | if [ -f CH4.txt ] ; then |
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| 277 | IPCC_CH4=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'` |
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[1546] | 278 | LMDZ_sed config.def CH4_ppb ${IPCC_CH4} |
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[1690] | 279 | else |
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| 280 | LMDZ_sed_default config.def CH4_ppb |
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[1535] | 281 | fi |
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| 282 | if [ -f N2O.txt ] ; then |
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| 283 | IPCC_N2O=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'` |
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[1546] | 284 | LMDZ_sed config.def N2O_ppb ${IPCC_N2O} |
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[1690] | 285 | else |
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| 286 | LMDZ_sed_default config.def N2O_ppb |
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[1535] | 287 | fi |
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| 288 | if [ -f CFC11.txt ] ; then |
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| 289 | IPCC_CFC11=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'` |
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[1546] | 290 | LMDZ_sed config.def CFC11_ppt ${IPCC_CFC11} |
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[1690] | 291 | else |
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| 292 | LMDZ_sed_default config.def CFC11_ppt |
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[1535] | 293 | fi |
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| 294 | if [ -f CFC12.txt ] ; then |
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| 295 | IPCC_CFC12=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'` |
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[1546] | 296 | LMDZ_sed config.def CFC12_ppt ${IPCC_CFC12} |
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[1690] | 297 | else |
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| 298 | LMDZ_sed_default config.def CFC12_ppt |
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[1535] | 299 | fi |
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| 300 | |
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[2275] | 301 | ## Coupling Time Step |
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| 302 | LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-${lmdz_UserChoices_t_coupl}} |
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| 303 | IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl} |
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| 304 | LMDZ_sed config.def t_coupl ${LMDZ_t_coupl} |
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[1780] | 305 | |
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| 306 | ##-- Add special treatement for CARBON CYCLE |
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[1546] | 307 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
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[1780] | 308 | ATM_Carbon_Update |
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| 309 | fi |
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[1537] | 310 | |
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| 311 | |
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[1538] | 312 | ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate |
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| 313 | ## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run). |
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| 314 | if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then |
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| 315 | LMDZ_COSP_daily=y |
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| 316 | fi |
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[1537] | 317 | |
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[1538] | 318 | |
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[1540] | 319 | ## output.def parameters |
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[1546] | 320 | # columns in phys_output_filekeys refer to the filenames given in phys_out_filenames in output.def : |
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[1539] | 321 | # histmth histday histhf histfh3h histhf3hm histstn |
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[1546] | 322 | LMDZ_sed output.def phys_out_filekeys "${ok_mensuel} ${ok_journe} ${ok_hf} ${ok_hf3h} ${ok_hf3hm} ${ok_stn}" |
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[1540] | 323 | LMDZ_sed output.def ecrit_ISCCP ${LMDZ_ecrit_ISCCP} |
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| 324 | LMDZ_sed output.def ok_cosp ${LMDZ_COSP_OK} |
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| 325 | LMDZ_sed output.def ok_mensuelCOSP ${LMDZ_COSP_monthly} |
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| 326 | LMDZ_sed output.def ok_journeCOSP ${LMDZ_COSP_daily} |
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| 327 | LMDZ_sed output.def ok_hfCOSP ${LMDZ_COSP_hf} |
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[1783] | 328 | LMDZ_sed output.def ok_histNMC "${LMDZ_NMC_monthly} ${LMDZ_NMC_daily} ${LMDZ_NMC_hf}" |
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[396] | 329 | |
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[1544] | 330 | ## gcm.def parameters : |
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| 331 | # Modification only for new physics |
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[2270] | 332 | if [ X${LMDZ_Physics} = X"AP" ] ; then |
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[2275] | 333 | LMDZ_sed gcm.def iphysiq 10 |
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[1690] | 334 | else |
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[2275] | 335 | LMDZ_sed_default gcm.def iphysiq |
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[1544] | 336 | fi |
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[396] | 337 | |
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[1544] | 338 | |
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[911] | 339 | ## run.def parameters |
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| 340 | LMDZ_sed run.def dayref ${InitDay} |
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| 341 | LMDZ_sed run.def nday ${PeriodLengthInDays} |
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| 342 | LMDZ_sed run.def raz_date ${RAZ_DATE} |
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| 343 | LMDZ_sed run.def periodav ${LMDZ_periodav} |
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| 344 | LMDZ_sed run.def adjust ${LMDZ_adjust} |
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[396] | 345 | |
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[1804] | 346 | # Set anneeref different for gcm and ce0l |
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[1923] | 347 | # Variable calend is different for a run with create_etat0_limit and the gcm |
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[1804] | 348 | # Test if executable create_etat0_limit is present and lmdz.x is not present |
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| 349 | if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
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| 350 | # for case ce0l : always take current year |
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| 351 | LMDZ_sed run.def anneeref ${year} |
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[1923] | 352 | LMDZ_sed run.def calend ${CalendarTypeForCreate} |
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[1804] | 353 | else |
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| 354 | # for case gcm : take first year of simulation |
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| 355 | LMDZ_sed run.def anneeref ${InitYear} |
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[1923] | 356 | LMDZ_sed run.def calend ${CalendarTypeForLmdz} |
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[1804] | 357 | fi |
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[1643] | 358 | |
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[1804] | 359 | # Activate creation of file grilles_gcm.nc only at first period |
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| 360 | if [ ${CumulPeriod} -eq 1 ] ; then |
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| 361 | LMDZ_sed run.def grilles_gcm_netcdf y |
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| 362 | else |
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| 363 | LMDZ_sed run.def grilles_gcm_netcdf n |
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| 364 | fi |
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| 365 | |
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[1650] | 366 | ## Determine from the variable ListOfComponents in config.card coupling to external models |
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| 367 | ## and set corresponding parameters in run.def |
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| 368 | echo ListOfComponents now running : ${config_ListOfComponents[*]} |
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| 369 | |
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| 370 | if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then |
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| 371 | echo "Activate ORCHIDEE, set VEGET=y in run.def" |
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| 372 | LMDZ_sed run.def VEGET y |
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| 373 | else |
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| 374 | echo "No ORCHIDEE, set VEGET=n in run.def" |
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| 375 | LMDZ_sed run.def VEGET n |
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| 376 | fi |
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| 377 | |
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| 378 | if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then |
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| 379 | echo "Activate coupling to ocean, set type_ocean=couple in run.def" |
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| 380 | LMDZ_sed run.def type_ocean couple |
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| 381 | else |
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| 382 | echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def" |
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| 383 | LMDZ_sed run.def type_ocean force |
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| 384 | fi |
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| 385 | |
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| 386 | if [ X${config_ListOfComponents_CHM} = Xinca ] ; then |
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| 387 | echo "Activate coupling to INCA, set type_trac=inca in run.def" |
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[1665] | 388 | LMDZ_sed run.def type_trac inca |
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[1650] | 389 | elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then |
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| 390 | echo "Activate coupling to REPROBUS, set type_trac=repr in run.def" |
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[1665] | 391 | LMDZ_sed run.def type_trac repr |
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[1779] | 392 | LMDZ_sed run.def config_inca none |
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[1650] | 393 | else |
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| 394 | echo "No coupling to chemistry model, set type_trac=lmdz in run.def" |
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[1665] | 395 | LMDZ_sed run.def type_trac lmdz |
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[1779] | 396 | LMDZ_sed run.def config_inca none |
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[1650] | 397 | fi |
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| 398 | |
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| 399 | |
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[2015] | 400 | # config.def : Activate direct radiative effect if ok_ade=y |
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| 401 | if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then |
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| 402 | LMDZ_sed config.def ok_ade ${lmdz_UserChoices_ok_ade} |
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| 403 | else |
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[1686] | 404 | LMDZ_sed config.def ok_ade n |
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[2015] | 405 | fi |
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| 406 | |
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| 407 | # config.def : Activate indirect radiative effect if ok_aie=y |
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| 408 | if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then |
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| 409 | LMDZ_sed config.def ok_aie ${lmdz_UserChoices_ok_aie} |
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| 410 | else |
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[1686] | 411 | LMDZ_sed config.def ok_aie n |
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[2015] | 412 | fi |
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[1816] | 413 | |
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[2015] | 414 | # config.def : Activate online aerosol coupled model if aerosol_couple=y |
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| 415 | if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then |
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| 416 | LMDZ_sed config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple} |
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[1686] | 417 | else |
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[1816] | 418 | LMDZ_sed config.def aerosol_couple n |
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[2015] | 419 | fi |
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[1686] | 420 | |
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[2015] | 421 | # config.def : Activate reading of ozone in climatology if read_climoz=2 |
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| 422 | if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then |
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| 423 | LMDZ_sed config.def read_climoz ${lmdz_UserChoices_read_climoz} |
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| 424 | else |
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| 425 | LMDZ_sed config.def read_climoz 0 |
---|
| 426 | fi |
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| 427 | |
---|
| 428 | # config.def : Choose aerosol use in radiative effect |
---|
| 429 | # type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only |
---|
| 430 | # =5 => dust only =6 => all aerosol |
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| 431 | if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then |
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| 432 | LMDZ_sed config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol} |
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| 433 | else |
---|
| 434 | LMDZ_sed config.def flag_aerosol 0 |
---|
| 435 | fi |
---|
| 436 | |
---|
| 437 | # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y |
---|
| 438 | if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then |
---|
| 439 | LMDZ_sed config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc} |
---|
| 440 | else |
---|
| 441 | LMDZ_sed config.def ok_cdnc n |
---|
| 442 | fi |
---|
| 443 | |
---|
[1690] | 444 | # guide.def : Activate nudging if ok_guide=y set in lmdz.card |
---|
[1643] | 445 | if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then |
---|
| 446 | LMDZ_sed guide.def ok_guide ${lmdz_UserChoices_ok_guide} |
---|
[1690] | 447 | else |
---|
| 448 | LMDZ_sed guide.def ok_guide n |
---|
[1643] | 449 | fi |
---|
| 450 | |
---|
[902] | 451 | ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ] |
---|
[1172] | 452 | ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta} |
---|
[1688] | 453 | if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then |
---|
[396] | 454 | awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp |
---|
| 455 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 456 | echo |
---|
| 457 | IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def" |
---|
| 458 | echo |
---|
| 459 | cat gcm.def |
---|
| 460 | ByPass_hgardfou_teta=n |
---|
[902] | 461 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}" |
---|
[396] | 462 | fi |
---|
| 463 | |
---|
[902] | 464 | ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ] |
---|
[1172] | 465 | ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats} |
---|
[1688] | 466 | if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then |
---|
[396] | 467 | sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp |
---|
| 468 | IGCM_sys_Mv gcm.def.tmp gcm.def |
---|
| 469 | echo |
---|
| 470 | IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def" |
---|
| 471 | echo |
---|
| 472 | cat gcm.def |
---|
| 473 | ByPass_hgardfou_mats=n |
---|
[902] | 474 | IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}" |
---|
[396] | 475 | fi |
---|
| 476 | |
---|
| 477 | if ( ${FirstInitialize} ) ; then |
---|
[1643] | 478 | if [ -f start.nc ] && [ -f startphy.nc ] ; then |
---|
| 479 | # The restart files already exist. They have been copied from a previous run or from a CREATE job |
---|
| 480 | echo "Restart files for LMDZ have been copied from a previous run" |
---|
[1778] | 481 | elif [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then |
---|
[1649] | 482 | # Do nothing because it is the program for creating restart files that is running and not LMDZ |
---|
| 483 | echo "create_etat0_limit.e will create initial start files" |
---|
[1643] | 484 | else |
---|
| 485 | # Restart files have to be created |
---|
| 486 | echo "Run create_etat0_limit.e to create restart files start.nc and startphy.nc for LMDZ" |
---|
[396] | 487 | if [ ${DRYRUN} -le 2 ] ; then |
---|
[894] | 488 | ##-- suppression of ozone file construction -- |
---|
[1643] | 489 | cp config.def config.def.save |
---|
| 490 | LMDZ_sed config.def read_climoz 0 |
---|
[396] | 491 | IGCM_sys_Cp ${R_EXE}/create_etat0_limit.e ${RUN_DIR}/. |
---|
| 492 | if [ ${DRYRUN} -le 1 ] ; then |
---|
[908] | 493 | ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e |
---|
[1643] | 494 | IGCM_sys_Put_Out start.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_start.nc |
---|
| 495 | IGCM_sys_Put_Out startphy.nc ${R_OUT_ATM_R}/${config_UserChoices_JobName}_${PeriodDateBegin}_startphy.nc |
---|
[396] | 496 | fi |
---|
[1643] | 497 | IGCM_sys_Mv config.def.save config.def |
---|
[396] | 498 | else |
---|
[908] | 499 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated" |
---|
| 500 | echo "EXECUTION of ${HOST_MPIRUN_COMMAND} -np 1 ./create_etat0_limit.e simulated for DRYRUN = " $DRYRUN >> stack |
---|
[396] | 501 | fi |
---|
| 502 | fi |
---|
| 503 | fi |
---|
| 504 | |
---|
| 505 | IGCM_debug_PopStack "ATM_Update" |
---|
| 506 | } |
---|
| 507 | |
---|
| 508 | #----------------------------------- |
---|
| 509 | function ATM_Finalize |
---|
| 510 | { |
---|
| 511 | IGCM_debug_PushStack "ATM_Finalize" |
---|
| 512 | |
---|
[1897] | 513 | # If the file exist, copy Bands_ file to PARAM/ in submit directory. This file will be used for the simulation. |
---|
[1892] | 514 | # Copy also the same file into ATM/Restart at ARCHIVE directory for backup. |
---|
[1897] | 515 | if [ -f Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ] ; then |
---|
| 516 | if [ ${CumulPeriod} -le ${LMDZ_NbPeriod_adjust} ] ; then |
---|
| 517 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
| 518 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_${CumulPeriod} |
---|
| 519 | elif [ ${CumulPeriod} -eq 1 ] && [ ${LMDZ_NbPeriod_adjust} -eq 0 ] ; then |
---|
| 520 | # Special case : first period and no adjust => Save bands file with suffix _0 |
---|
| 521 | IGCM_sys_Cp Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${SUBMIT_DIR}/PARAM/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
| 522 | IGCM_sys_Put_Out Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat ${R_OUT_ATM_R}/${config_UserChoices_JobName}_Bands_${RESOL_ATM_3D}_${NUM_PROC_ATM}prc.dat_0 |
---|
| 523 | fi |
---|
[1892] | 524 | fi |
---|
[396] | 525 | |
---|
[1537] | 526 | # Add special treatement for CARBON CYCLE |
---|
[1546] | 527 | if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then |
---|
[1780] | 528 | ATM_Carbon_Finalize |
---|
| 529 | fi |
---|
[1537] | 530 | |
---|
[1780] | 531 | echo FINALIZE ATM ! |
---|
[1537] | 532 | |
---|
[1780] | 533 | IGCM_debug_PopStack "ATM_Finalize" |
---|
| 534 | } |
---|
[1537] | 535 | |
---|
| 536 | |
---|
| 537 | |
---|
[1780] | 538 | function ATM_Carbon_Update |
---|
| 539 | { |
---|
| 540 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
[1537] | 541 | |
---|
[1780] | 542 | IGCM_debug_PushStack "ATM_Carbon_Update" |
---|
| 543 | |
---|
| 544 | typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2 |
---|
| 545 | typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 546 | typeset PathCO2log |
---|
| 547 | typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX |
---|
| 548 | |
---|
| 549 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then |
---|
| 550 | ##--Initialization of fluxes to an undefined value at the first run |
---|
| 551 | UndefinedValueCo2=-9999 |
---|
| 552 | InitPeriodCo2=0 |
---|
| 553 | InitDateBeginCo2=${UndefinedValueCo2} |
---|
| 554 | InitYearCo2=$(( ${year} - 1 )) |
---|
| 555 | InitDateEndCo2=${InitYearCo2}1231 |
---|
| 556 | fCO2_ff=${UndefinedValueCo2} |
---|
| 557 | CO2SBG=${UndefinedValueCo2} |
---|
| 558 | CO2LU=${UndefinedValueCo2} |
---|
| 559 | CO2MBG=${UndefinedValueCo2} |
---|
| 560 | CO2_ppm_prec=${UndefinedValueCo2} |
---|
| 561 | # Get the initial value of atmosp. pco2 |
---|
| 562 | CO2_ppm=${lmdz_UserChoices_co2_init} |
---|
| 563 | |
---|
| 564 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 565 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 566 | |
---|
[1537] | 567 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
[1780] | 568 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
[1537] | 569 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
[1780] | 570 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 571 | |
---|
| 572 | # Get the path where the log file co2.log is |
---|
| 573 | PathCO2log=${SUBMIT_DIR} |
---|
| 574 | # Get Previous line in co2.log |
---|
| 575 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 576 | |
---|
| 577 | else |
---|
| 578 | |
---|
| 579 | # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ): |
---|
| 580 | # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2. |
---|
| 581 | #SubmitRestartPath= |
---|
| 582 | if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then |
---|
| 583 | IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath |
---|
| 584 | PathCO2log=${config_ATM_SubmitRestartPath} |
---|
| 585 | Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} ) |
---|
| 586 | PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log ) |
---|
| 587 | |
---|
| 588 | IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log |
---|
| 589 | IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log |
---|
| 590 | |
---|
| 591 | # Save Last Line of control in new co2.log file |
---|
| 592 | InitPeriodCo2=0 |
---|
| 593 | InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' ) |
---|
| 594 | InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' ) |
---|
| 595 | fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' ) |
---|
| 596 | CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' ) |
---|
| 597 | CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' ) |
---|
| 598 | CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' ) |
---|
| 599 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' ) |
---|
| 600 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 601 | |
---|
| 602 | echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 603 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 604 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 605 | else |
---|
| 606 | # Get restart line in co2.log |
---|
| 607 | PathCO2log=${SUBMIT_DIR} |
---|
| 608 | PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log ) |
---|
| 609 | # Get the value of atmosp. pco2 in co2.log |
---|
| 610 | CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 611 | fi |
---|
| 612 | |
---|
[1537] | 613 | fi |
---|
[1780] | 614 | |
---|
| 615 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then |
---|
| 616 | # Modify co2_ppm in config.def only for historical run |
---|
| 617 | # If not historical run, keep co2_ppm value set earlier by LMDZ_sed |
---|
| 618 | LMDZ_sed config.def co2_ppm ${CO2_ppm} |
---|
| 619 | fi |
---|
| 620 | IGCM_debug_PopStack "ATM_Carbon_Update" |
---|
| 621 | } |
---|
[1537] | 622 | |
---|
[396] | 623 | |
---|
[1780] | 624 | function ATM_Carbon_Finalize |
---|
| 625 | { |
---|
| 626 | # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card |
---|
| 627 | |
---|
| 628 | IGCM_debug_PushStack "ATM_Carbon_Finalize" |
---|
| 629 | |
---|
| 630 | typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff |
---|
| 631 | |
---|
| 632 | # Fossil fuel emission |
---|
| 633 | if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then |
---|
| 634 | # For Control, no fossil fuel emission : |
---|
| 635 | fCO2_ff=0 |
---|
| 636 | echo "Fossil Fuel for control run :" ${fCO2_ff} |
---|
| 637 | else |
---|
| 638 | # For historical, get the fossile fuel file : |
---|
| 639 | fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt ) |
---|
| 640 | echo "Fossil Fuel for historical run :" ${fCO2_ff} |
---|
| 641 | fi |
---|
| 642 | |
---|
| 643 | # Get the value of ocean carbon flux |
---|
| 644 | CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output ) |
---|
| 645 | CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" ) |
---|
| 646 | echo "Ocean carbon flux :" ${CO2MBG} |
---|
| 647 | |
---|
| 648 | # Get the value of land fluxes |
---|
| 649 | set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 ) |
---|
| 650 | CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" ) |
---|
| 651 | CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" ) |
---|
| 652 | CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" ) |
---|
| 653 | echo "Land carbon flux (NEP) :" ${CO2SRF} |
---|
| 654 | echo "LU flux (FLUC) :" ${CO2LU} |
---|
| 655 | echo "Total Land carbon flux (NBP) :" ${CO2SBG} |
---|
| 656 | |
---|
| 657 | # Previous CO2 |
---|
| 658 | CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' ) |
---|
| 659 | echo "Previous CO2 :" ${CO2_ppm_prec} |
---|
| 660 | |
---|
| 661 | # Formula |
---|
| 662 | CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l ) |
---|
| 663 | echo "New CO2 :" ${CO2_ppm} |
---|
| 664 | |
---|
| 665 | # Save CO2 values in ExeCpuLog variable contents 5 fields |
---|
| 666 | echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" | \ |
---|
| 667 | gawk '{printf(" %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \ |
---|
| 668 | $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log |
---|
| 669 | |
---|
| 670 | IGCM_debug_PopStack "ATM_Carbon_Finalize" |
---|
[396] | 671 | } |
---|