source: CONFIG/UNIFORM/v6/IPSLESM6/GENERAL/DRIVER/lmdz.driver @ 3687

Last change on this file since 3687 was 3687, checked in by acosce, 3 years ago

Update IPSLESM to comply with v6 standard and add the AER experiment for the coupled model

File size: 24.9 KB
Line 
1#!/bin/ksh
2#-----------------------------------------------------------------
3function ATM_Initialize
4{
5    IGCM_debug_PushStack "ATM_Initialize"
6
7    RESOL_ATM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-F-" '{print $1}')
8
9    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x39
10
11    RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' )
12    RESOL_ATM_X=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $1}' )
13    RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $2}' )
14    RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
15
16    ##- LMDZ physics version
17    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
18    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
19        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
20    else
21        LMDZ_Physics=AP
22    fi
23    echo LMDZ physics version : ${LMDZ_Physics}
24
25    ##- Create_etat0_limit version
26    ##  Define variable CREATE only if it is set in lmdz.card section UserChoices.
27    ##  This variable is only used in lmdz.card to choose input files.
28    if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
29        IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
30        CREATE=${lmdz_UserChoices_CREATE}
31        echo create_etat0_limit version : ${CREATE}
32    fi
33
34
35    ## - LMDZ choice of config.def file
36    ##   ConfType must be set in lmdz.card
37    ConfType=${lmdz_UserChoices_ConfType}
38
39    ##- LMDZ output level, to be set in lmdz.card
40    if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
41        # OutLevel is not set. Take default value low.
42        OutLevel=low
43    else
44        OutLevel=${lmdz_UserChoices_OutLevel}
45    fi
46
47    ##-- Output frequency purpose ....
48    ##--  Initialisation  ....
49    ok_mensuel=.FALSE.
50    ok_journe=.FALSE.
51    ok_hf=.FALSE.
52    ok_hf3h=.FALSE.
53    ok_hf3hm=.FALSE.
54    ok_stn=.FALSE.
55
56
57    case ${config_UserChoices_PeriodLength} in
58        1Y|1y|1M|1m) ok_mensuel=.TRUE. ;;
59        5D|5d|1D|1d) ok_journe=.TRUE. ;;
60    esac
61
62    for frequency in ${config_ATM_WriteFrequency} ; do
63        case ${frequency} in
64            1M|1m) ok_mensuel=.TRUE. ;;
65        esac
66        case ${frequency} in
67            5D|5d|1D|1d) ok_journe=.TRUE. ;;
68        esac
69        case ${frequency} in
70            HF|hf) ok_hf=.TRUE. ;;
71        esac
72        case ${frequency} in
73            HF3h|hf3h) ok_hf3h=.TRUE. ;;
74        esac
75        case ${frequency} in
76            HF3hm|hf3hm) ok_hf3hm=.TRUE. ;;
77        esac
78        case ${frequency} in
79            STN|stn) ok_stn=.TRUE. ;;
80        esac
81    done
82
83    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
84        ok_mensuel=.FALSE.
85        ok_journe=.FALSE.
86        ok_hf=.FALSE.
87        ok_hf3h=.FALSE.
88        ok_hf3hm=.FALSE.
89        ok_stn=.FALSE.
90    fi
91
92##  Read LMDZ_COSP_OK in lmdz.card
93    if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then
94        ##  LMDZ_COSP_OK=y, now read all other COSP variables
95        ##  Read LMDZ_COSP_monthly in lmdz.card
96        if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then
97            LMDZ_COSP_monthly=.TRUE.
98        else
99            LMDZ_COSP_monthly=.FALSE.
100        fi
101        ##  Read LMDZ_COSP_daily in lmdz.card
102        if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then
103            LMDZ_COSP_daily=.TRUE.
104        else
105            LMDZ_COSP_daily=.FALSE.
106        fi
107        ##  Read LMDZ_COSP_hf in lmdz.card
108        if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then
109            LMDZ_COSP_hf=.TRUE.
110        else
111            LMDZ_COSP_hf=.FALSE.
112        fi
113    else
114        # LMDZ_COSP_OK=n : All cosp output are deactivated
115        LMDZ_COSP_monthly=.FALSE.
116        LMDZ_COSP_daily=.FALSE.
117        LMDZ_COSP_hf=.FALSE.
118    fi 
119
120    ##  Read LMDZ_NMC_monthly in lmdz.card
121    if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then
122        LMDZ_NMC_monthly=.TRUE.
123    else
124        LMDZ_NMC_monthly=.FALSE.
125    fi
126   
127    ## Read LMDZ_NMC_daily in lmdz.card
128    if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then
129        LMDZ_NMC_daily=.TRUE.
130    else
131        LMDZ_NMC_daily=.FALSE.
132    fi
133   
134    ## Read LMDZ_NMC_hf in lmdz.card
135    if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then
136        LMDZ_NMC_hf=.TRUE.
137    else
138        LMDZ_NMC_hf=.FALSE.
139    fi
140   
141
142    IGCM_debug_PopStack "ATM_Initialize"
143}
144
145#-----------------------------------------------------------------
146function ATM_Update
147{
148    IGCM_debug_PushStack "ATM_Update"
149
150    ##-- GHG forcing :
151    ##   If forcing file exist in run directory, read values for the current year
152    ##   and set in config.def. If not use the default value set in config.def
153
154    # Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
155    IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
156    IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
157    if [ -f SOLARANDVOLCANOES.txt ] ; then
158        value=`grep Annee_${year} SOLARANDVOLCANOES.txt | awk -F= '{print $2}'`
159        if [ X"${value}" = X ] ; then
160            # The grep returned empty variable, stop execution
161            IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
162            IGCM_debug_Verif_Exit
163        fi
164    else
165        value=DEFAULT
166    fi
167    IGCM_comp_modifyDefFile nonblocker config.def solaire $value
168
169
170    # Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
171    # Calculate co2_ppm_per as co2_ppm*4.
172    if [ -f CO2.txt ] ; then
173        value=`grep Annee_${year} CO2.txt | awk -F= '{print $2}'`
174        if [ X"${value}" = X ] ; then
175            # The grep returned empty variable, stop execution
176            IGCM_debug_Exit "The file CO2.txt do not contain the current year."
177            IGCM_debug_Verif_Exit
178        fi
179        value4=`grep Annee_${year} CO2.txt | awk -F= '{print $2 * 4}'`
180    else
181        value=DEFAULT
182        value4=DEFAULT
183    fi
184    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
185    IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
186
187
188    # Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
189    if [ -f CH4.txt ] ; then
190        value=`grep Annee_${year} CH4.txt | awk -F= '{print $2}'`
191        if [ X"${value}" = X ] ; then
192            # The grep returned empty variable, stop execution
193            IGCM_debug_Exit "The file CH4.txt do not contain the current year."
194            IGCM_debug_Verif_Exit
195        fi
196    else
197        value=DEFAULT
198    fi
199    IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
200
201
202    # Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
203    if [ -f N2O.txt ] ; then
204        value=`grep Annee_${year} N2O.txt | awk -F= '{print $2}'`
205        if [ X"${value}" = X ] ; then
206            # The grep returned empty variable, stop execution
207            IGCM_debug_Exit "The file N2O.txt do not contain the current year."
208            IGCM_debug_Verif_Exit
209        fi
210    else
211        value=DEFAULT
212    fi
213    IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
214
215    # Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
216    if [ -f CFC11.txt ] ; then
217        value=`grep Annee_${year} CFC11.txt | awk -F= '{print $2}'`
218        if [ X"${value}" = X ] ; then
219            # The grep returned empty variable, stop execution
220            IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
221            IGCM_debug_Verif_Exit
222        fi
223    else
224        value=DEFAULT
225    fi
226    IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
227
228
229    # Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
230    if [ -f CFC12.txt ] ; then
231        value=`grep Annee_${year} CFC12.txt | awk -F= '{print $2}'`
232        if [ X"${value}" = X ] ; then
233            # The grep returned empty variable, stop execution
234            IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
235            IGCM_debug_Verif_Exit
236        fi
237    else
238        value=DEFAULT
239    fi
240    IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
241
242
243    ## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
244    LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
245    IGCM_debug_Print 3 "LMDZ_t_coupl "   ${LMDZ_t_coupl}
246    IGCM_comp_modifyDefFile nonblocker config.def t_coupl   ${LMDZ_t_coupl} 
247
248    ##-- Add special treatement for CARBON CYCLE
249    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
250        ATM_Carbon_Update
251    fi
252
253
254    ##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
255    ##   COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
256    if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] &&  [ ${year} -ge 1979 ]) ; then
257        LMDZ_COSP_daily=.TRUE.
258    fi
259
260    ## Modifiy
261    IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel}
262   
263    IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe}
264   
265    if [ X${OutLevel} = Xlow ] || [ X${OutLevel} = Xmedium ] ; then
266        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2
267    else
268        IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5
269    fi
270   
271    IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf}
272   
273    if [ X${OutLevel} = Xlow ] ; then
274        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5
275    elif [ X${OutLevel} = Xmedium ] ; then
276        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6
277    elif [ X${OutLevel} = Xhigh ] ; then
278        IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7
279    fi
280       
281    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
282    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
283
284    IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn}
285
286    IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly}
287    IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily}
288    IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf}
289   
290    IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly}
291    IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily}
292    IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf}
293
294    # Activate the histstrataer output file only for configuration with interactive stratospheric aersols
295    # done by setting the key word LMDZ_strataero=y in lmdz.card
296    if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
297        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE.
298    else
299        IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .FALSE.
300    fi
301
302
303    ## run.def parameters
304
305
306    ##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
307    if [ ${CumulPeriod} -eq 1 ] ; then
308        IGCM_comp_modifyDefFile blocker run.def raz_date  1
309    else
310        IGCM_comp_modifyDefFile blocker run.def raz_date  0
311    fi
312
313    ##-- Calendar type for LMDZ and create_etat0_limit
314    case ${config_UserChoices_CalendarType} in
315        leap|gregorian)
316            IGCM_comp_modifyDefFile blocker run.def calend  gregorian ;;
317        noleap)
318            IGCM_comp_modifyDefFile blocker run.def calend  earth_365d ;;
319        360d)
320            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
321        *)
322            IGCM_comp_modifyDefFile blocker run.def calend  earth_360d ;;
323    esac
324
325    IGCM_comp_modifyDefFile blocker run.def dayref    ${InitDay}
326    IGCM_comp_modifyDefFile blocker run.def nday      ${PeriodLengthInDays}
327
328    # Set anneeref different for gcm and ce0l
329    # Test if executable create_etat0_limit is present and lmdz.x is not present
330    if [ -f create_etat0_limit* ] || [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
331        # for case ce0l : always take current year
332        IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
333
334        # Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
335        # In more recent versions of LMDZ, this will not be needed.
336        IGCM_comp_modifyDefFile force   run.def use_filtre_fft n
337    else
338        # for case gcm : take first year of simulation
339        IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
340    fi
341
342    ## Determine from the variable ListOfComponents in config.card coupling to external models
343    ## and set corresponding parameters in run.def
344    echo ListOfComponents now running : ${config_ListOfComponents[*]}
345
346    if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
347        echo "Activate ORCHIDEE, set VEGET=y in run.def"
348        IGCM_comp_modifyDefFile blocker run.def VEGET y
349    else
350        echo "No ORCHIDEE, set VEGET=n in run.def"
351        IGCM_comp_modifyDefFile blocker run.def VEGET n
352    fi
353
354    if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
355        echo "Activate coupling to ocean, set type_ocean=couple in run.def"
356        IGCM_comp_modifyDefFile blocker run.def type_ocean couple
357    else
358        echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
359        IGCM_comp_modifyDefFile blocker run.def type_ocean force
360    fi
361
362    if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
363        echo "Activate coupling to INCA, set type_trac=inca in run.def"
364        IGCM_comp_modifyDefFile blocker run.def type_trac inca
365    elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
366        echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
367        IGCM_comp_modifyDefFile blocker run.def type_trac repr
368        IGCM_comp_modifyDefFile blocker run.def config_inca none
369    else
370        echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
371        IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
372        IGCM_comp_modifyDefFile blocker run.def config_inca none
373    fi
374
375
376    # config.def : Activate direct radiative effect if ok_ade=y
377    if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
378        IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
379    else
380        IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
381    fi 
382
383    # config.def : Activate indirect radiative effect if ok_aie=y
384    if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
385        IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
386    else
387        IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
388    fi 
389
390    # config.def : Activate online aerosol coupled model if aerosol_couple=y
391    if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
392        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
393    else
394        IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
395    fi 
396
397    # config.def : Activate reading of ozone in climatology if read_climoz=2
398    if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
399        IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
400    else
401        IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0     
402    fi 
403
404    # config.def : Choose aerosol use in radiative effect
405    #  type of coupled aerosol =1 (default) =2 => bc  only =3 => pom only =4 => seasalt only
406    # =5 => dust only =6 => all aerosol   
407    if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
408        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
409    else
410        IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
411    fi 
412
413    # config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
414    if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
415        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
416    else
417        IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
418    fi 
419
420    # config.def : Activate COSP
421    if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
422        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
423    else
424        IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
425    fi 
426
427    # config.def : Modify parameter pmagic if it is set in lmdz.card
428    if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
429        IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
430    else
431        # Take default value set in config.def
432        IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
433    fi 
434
435    # guide.def : Activate nudging if ok_guide=y set in lmdz.card
436    if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
437        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide  ${lmdz_UserChoices_ok_guide}
438    else
439        IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
440    fi
441
442    ## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
443    ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
444    if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
445        awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
446        IGCM_sys_Mv gcm.def.tmp gcm.def
447        echo
448        IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
449        echo
450        cat gcm.def
451        ByPass_hgardfou_teta=n
452        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
453    fi
454
455    ## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
456    ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
457    if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
458        sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
459        IGCM_sys_Mv gcm.def.tmp gcm.def
460        echo
461        IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
462        echo
463        cat gcm.def
464        ByPass_hgardfou_mats=n
465        IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
466    fi
467
468    # Add include of LMDZ context in iodef.xml
469    # In iodef.xml add on next line after "COMPONENT CONTEXT"
470    #  <context id="LMDZ" src="./context_lmdz.xml"/>
471    echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
472    if [ X"$( echo ${config_UserChoices_ExpType} | grep CMIP6 )" != "X" ] ; then
473        echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
474        echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
475    fi
476    cp iodef.xml iodef.xml.tmp
477    sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
478    rm iodef.xml.tmp add.tmp
479
480    #Long Name as global attribute (if LongName is not empty)
481    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
482        listfile=$(ls file_def*lmdz.xml)
483        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
484        for file in ${listfile}
485        do
486            cp ${file} ${file}.tmp
487            sed -e "/<file id/r add.tmp" \
488                ${file}.tmp > ${file}
489            rm ${file}.tmp
490        done
491        rm add.tmp
492    fi
493           
494    IGCM_debug_PopStack "ATM_Update"
495}
496
497#-----------------------------------
498function ATM_Finalize
499{
500    IGCM_debug_PushStack "ATM_Finalize"
501
502    # Add special treatement for CARBON CYCLE
503    if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] || [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
504        ATM_Carbon_Finalize
505    fi
506
507    echo FINALIZE ATM !
508
509    IGCM_debug_PopStack "ATM_Finalize"
510}
511
512
513
514function ATM_Carbon_Update
515{
516    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
517
518    IGCM_debug_PushStack "ATM_Carbon_Update"
519
520    typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
521    typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
522    typeset PathCO2log
523    typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
524   
525    if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
526        ##--Initialization of fluxes to an undefined value at the first run
527        UndefinedValueCo2=-9999
528        InitPeriodCo2=0
529        InitDateBeginCo2=${UndefinedValueCo2}
530        InitYearCo2=$(( ${year} - 1 )) 
531        InitDateEndCo2=${InitYearCo2}1231
532        fCO2_ff=${UndefinedValueCo2} 
533        CO2SBG=${UndefinedValueCo2}
534        CO2LU=${UndefinedValueCo2}
535        CO2MBG=${UndefinedValueCo2}
536        CO2_ppm_prec=${UndefinedValueCo2}
537        # Get the initial value of atmosp. pco2
538        CO2_ppm=${lmdz_UserChoices_co2_init}
539       
540        IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
541        IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
542       
543        # Save CO2 values in ExeCpuLog variable contents 5 fields
544        echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
545            gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
546                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
547       
548        # Get the path where the log file co2.log is
549        PathCO2log=${SUBMIT_DIR} 
550        # Get Previous line in co2.log
551        PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
552       
553    else
554       
555        # NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
556        # !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
557        #SubmitRestartPath=
558        if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
559            IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
560            PathCO2log=${config_ATM_SubmitRestartPath}
561            Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
562            PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
563           
564            IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
565            IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
566           
567            # Save Last Line of control in new co2.log file
568            InitPeriodCo2=0   
569            InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $2}' )
570            InitDateEndCo2=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $3}' )
571            fCO2_ff=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $6}' )
572            CO2SBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $8}' )
573            CO2LU=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $9}' )
574            CO2MBG=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $7}' )
575            CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $5}' )
576            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
577           
578            echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
579                gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
580                              $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
581        else
582           # Get restart line in co2.log
583            PathCO2log=${SUBMIT_DIR}
584            PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
585           # Get the value of atmosp. pco2 in co2.log
586            CO2_ppm=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
587        fi
588       
589    fi
590   
591    if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
592        # Modify co2_ppm in config.def only for historical run
593        # If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
594        IGCM_comp_modifyDefFile force config.def co2_ppm     ${CO2_ppm}
595    fi
596    IGCM_debug_PopStack "ATM_Carbon_Update"
597}
598
599
600function ATM_Carbon_Finalize
601{
602    # This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
603
604    IGCM_debug_PushStack "ATM_Carbon_Finalize"
605
606    typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
607   
608        # Fossil fuel emission
609    if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
610            # For Control, no fossil fuel emission :
611        fCO2_ff=0
612        echo "Fossil Fuel for control run  :" ${fCO2_ff}
613    else
614            # For historical, get the fossile fuel file :
615        fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
616        echo "Fossil Fuel for historical run  :" ${fCO2_ff}
617    fi
618   
619        # Get the value of ocean carbon flux
620    CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
621    CO2MBG=$( echo ${CO2MBG} | sed -e "s/ *//" )
622    echo "Ocean carbon flux  :" ${CO2MBG}
623   
624        # Get the value of land fluxes
625    set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
626    CO2SRF=$( echo ${CO2SBG_3V[0]} | sed -e "s/ *//" )
627    CO2LU=$( echo ${CO2SBG_3V[1]} | sed -e "s/ *//" )
628    CO2SBG=$( echo ${CO2SBG_3V[2]} | sed -e "s/ *//" )
629    echo "Land carbon flux (NEP)         :" ${CO2SRF}
630    echo "LU flux          (FLUC)        :" ${CO2LU}
631    echo "Total Land carbon flux (NBP)   :" ${CO2SBG}
632   
633        # Previous CO2
634    CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" | gawk -F '|' '{gsub(" ",""); print $4}' )
635    echo "Previous CO2  :" ${CO2_ppm_prec}
636   
637        # Formula
638    CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" | bc -l )
639    echo "New CO2  :" ${CO2_ppm}
640   
641        # Save CO2 values in ExeCpuLog variable contents 5 fields
642    echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" |   \
643        gawk '{printf("  %11d | %15s | %15s | %22.15g | %20.15g | %11.8g | %11.8g | %12.8g | %12.8g \n", \
644                           $1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
645   
646    IGCM_debug_PopStack "ATM_Carbon_Finalize"
647}
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