| 1 | #!/bin/bash |
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| 2 | #set -vx |
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| 3 | # Default options |
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| 4 | # |
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| 5 | # |
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| 6 | # |
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| 7 | date |
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| 8 | #### 1 Set up the compiling options |
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| 9 | #### Define some directories |
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| 10 | submitdir=$( pwd ) |
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| 11 | modipsl=$submitdir/../.. |
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| 12 | arch_path=$submitdir/ARCH |
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| 13 | |
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| 14 | #### Set default options |
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| 15 | # Optimization mode |
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| 16 | # optmode=prod/dev/debug |
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| 17 | optmode=prod |
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| 18 | # Resolution of LMDZ in regular mode |
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| 19 | regular_latlon=yes |
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| 20 | resol_atm_3d=96x95x39 |
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| 21 | optchimie=NMHC_AER_S |
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| 22 | #recompilation de inca seul ou de tous les modeles |
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| 23 | clean_inca="" |
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| 24 | full_flag="" |
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| 25 | |
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| 26 | # fcm_arch |
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| 27 | fcm_arch=default |
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| 28 | # Default values to be overritten |
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| 29 | parallel=mpi_omp |
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| 30 | export fcm_arch parallel xios |
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| 31 | |
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| 32 | # Default netcdf_lib is used for XIOS but can be change by argument |
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| 33 | netcdf_lib="" |
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| 34 | |
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| 35 | # Output text file for compilation of each component |
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| 36 | outfile=$submitdir/out_compile_lmdzorinca |
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| 37 | rm -f $outfile; echo > $outfile |
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| 38 | echo; echo "Text output from compilation will be stored in file out_compile_lmdzorinca"; echo |
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| 39 | |
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| 40 | #### Read arguments |
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| 41 | # Loop over all arguments to modify default set up |
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| 42 | while (($# > 0)) ; do |
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| 43 | case $1 in |
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| 44 | "-h") cat <<fin |
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| 45 | |
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| 46 | ######################################################################## |
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| 47 | # Usage of the script compile_lmdzorinca.sh |
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| 48 | # |
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| 49 | ######################################################################## |
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| 50 | |
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| 51 | ./compile_config [Options] |
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| 52 | |
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| 53 | Options: -full, -regular_latlon, -chimie, -clean_inca, -debug, -dev, -prod(default) |
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| 54 | |
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| 55 | Example 1: Default compilation of LMDZ-ORCHIDEE-INCA with XIOS and IOIPSL - NMHC_AER_S / 96x95x39 |
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| 56 | ./compile_lmdzorinca.sh |
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| 57 | |
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| 58 | Example 2: Compilation with a chosen chemistry, for example DUSS (default: NMHC_AER_S) |
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| 59 | ./compile_lmdzorinca.sh -chimie DUSS |
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| 60 | |
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| 61 | Example 3: Compile in debug mode - in this case you need to modify Optmode in config.card |
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| 62 | ./compile_lmdzorinca.sh -debug |
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| 63 | |
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| 64 | Example 4: Default compilation with full recompilation of all components |
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| 65 | ./compile_lmdzorinca.sh -full |
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| 66 | |
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| 67 | Example 5: Default compilation with recompilation of inca model only |
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| 68 | ./compile_lmdzorinca.sh -clean_inca |
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| 69 | |
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| 70 | Example 6: Compilation of LMDZ in regular lat-lon for other dimensions (default: 96x95x39) |
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| 71 | The dimension can be changed to any other 3d dimension. |
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| 72 | ./compile_lmdzorinca.sh -regular_latlon 144x142x79 |
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| 73 | |
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| 74 | fin |
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| 75 | exit;; |
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| 76 | |
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| 77 | "-parallel") |
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| 78 | parallel=$2 ; shift ; shift ;; |
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| 79 | |
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| 80 | "-arch") |
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| 81 | fcm_arch="$2" ; shift ; shift ;; |
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| 82 | |
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| 83 | "-xios") |
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| 84 | xios="$2" ; shift ; shift ;; |
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| 85 | |
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| 86 | "-optmode") |
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| 87 | optmode=$2 ; shift ; shift ;; |
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| 88 | |
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| 89 | "-debug") |
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| 90 | optmode=debug ; shift ;; |
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| 91 | |
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| 92 | "-dev") |
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| 93 | optmode=dev ; shift ;; |
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| 94 | |
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| 95 | "-prod") |
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| 96 | optmode=prod ; shift ;; |
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| 97 | |
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| 98 | "-regular_latlon") |
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| 99 | regular_latlon=yes ; |
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| 100 | resol_atm_3d=$2 ; shift ; shift ;; |
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| 101 | |
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| 102 | "-full") |
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| 103 | full_flag="-full"; shift ;; |
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| 104 | |
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| 105 | "-clean_inca") |
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| 106 | clean_inca="-clean"; shift ;; |
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| 107 | |
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| 108 | "-netcdf_lib_seq") |
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| 109 | netcdf_lib="--netcdf_lib netcdf4_seq"; shift ;; |
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| 110 | |
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| 111 | "-chimie") |
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| 112 | echo $2; |
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| 113 | optchimie=$2; shift ; shift;; |
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| 114 | |
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| 115 | *) |
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| 116 | echo "unknown option "$2" , exiting..." |
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| 117 | exit |
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| 118 | esac |
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| 119 | done |
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| 120 | echo; echo "********************* WARNING **********************" |
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| 121 | echo; echo "********************* WARNING **********************" |
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| 122 | echo; echo " if you are working with an lmdz version before rev 3563 (check it with command svn info) " |
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| 123 | echo "you need to modify phylmd/physiq_mod.F90 file " |
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| 124 | echo "add ! to comment lines if/endif before and after the call to AEROSOL_METEO_CALC" |
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| 125 | echo; echo "********************* WARNING **********************" |
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| 126 | echo; echo "********************* WARNING **********************" |
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| 127 | |
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| 128 | echo "Following arguments are set in current compiling:" >> $outfile |
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| 129 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch, full_flag=$full_flag regular_latlon=$regular_latlon" >> $outfile |
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| 130 | echo >> $outfile |
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| 131 | |
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| 132 | ### Read host dependent default values |
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| 133 | ### These variables will not be changed if they were set as argument |
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| 134 | ###./host.sh $host |
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| 135 | # Later : Following lines should be set in host.sh file |
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| 136 | # begin host.sh |
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| 137 | if [ $fcm_arch == default ] ; then |
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| 138 | # Find out current host and source specific paths and commands for the host |
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| 139 | case $( hostname -s ) in |
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| 140 | ada*) |
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| 141 | fcm_arch=X64_ADA;; |
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| 142 | irene*) |
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| 143 | fcm_arch=X64_IRENE;; |
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| 144 | asterix*|obelix*) |
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| 145 | fcm_arch=ifort_LSCE;; |
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| 146 | ciclad*|climserv*) |
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| 147 | fcm_arch=ifort_CICLAD;; |
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| 148 | *) |
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| 149 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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| 150 | echo Exit now. |
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| 151 | exit |
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| 152 | esac |
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| 153 | fi |
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| 154 | |
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| 155 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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| 156 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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| 157 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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| 158 | echo >> $outfile |
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| 159 | echo "The file ARCH/arch-${fcm_arch}.env will be used for the compilation of each component" |
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| 160 | rm -f ARCH/arch.env |
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| 161 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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| 162 | fi |
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| 163 | |
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| 164 | #### 2 Do the compilation |
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| 165 | ## 2.1 Compile ioipsl |
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| 166 | cd $modipsl/modeles/IOIPSL |
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| 167 | echo; echo "NOW COMPILE IOIPSL" |
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| 168 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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| 169 | |
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| 170 | # Check if compilation with fcm is included in IOIPSL |
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| 171 | if [ ! -f makeioipsl_fcm ] ; then |
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| 172 | echo "The file makeiopsl_fcm do not exist. Probably this is not the right version of IOIPSL." |
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| 173 | echo "Version of IOIPSL with fcm compilation is needed to compile with this script. Stop now." |
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| 174 | exit |
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| 175 | fi |
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| 176 | |
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| 177 | echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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| 178 | ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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| 179 | # Test if compiling succeded |
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| 180 | if [[ $? != 0 ]] ; then |
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| 181 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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| 182 | exit |
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| 183 | fi |
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| 184 | |
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| 185 | ## 2.2 Compile xios |
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| 186 | cd $modipsl/modeles/XIOS |
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| 187 | echo; echo "NOW COMPILE XIOS" |
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| 188 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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| 189 | echo ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_flag >> $outfile |
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| 190 | ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_flag >> $outfile 2>&1 |
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| 191 | # Test if compiling succeded |
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| 192 | if [[ $? != 0 ]] ; then |
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| 193 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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| 194 | exit |
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| 195 | fi |
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| 196 | # Move executables to modipsl/bin |
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| 197 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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| 198 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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| 199 | else |
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| 200 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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| 201 | exit |
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| 202 | fi |
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| 203 | |
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| 204 | |
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| 205 | ## 2.3 Compile orchidee |
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| 206 | cd $modipsl/modeles/ORCHIDEE |
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| 207 | echo; echo "NOW COMPILE ORCHIDEE" |
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| 208 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile |
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| 209 | |
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| 210 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_flag -driver >> $outfile |
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| 211 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_flag -driver >> $outfile 2>&1 |
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| 212 | # Test if compiling finished |
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| 213 | if [[ $? != 0 ]] ; then |
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| 214 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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| 215 | exit |
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| 216 | fi |
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| 217 | |
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| 218 | |
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| 219 | ## 2.4 Compile LMDZ and INCA for regular latlon configuration |
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| 220 | if [ $regular_latlon = yes ] ; then |
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| 221 | |
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| 222 | cd $modipsl/modeles/INCA |
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| 223 | #compile INCA regulat lat_lon chimie librairy |
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| 224 | echo; echo "NOW COMPILE INCA ${optchimie} on resolution = ${resol_atm_3d}" |
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| 225 | echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -resol ${resol_atm_3d} -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag $clean_inca >> $outfile |
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| 226 | ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -resol ${resol_atm_3d} -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag $clean_inca >> $outfile 2>&1 |
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| 227 | |
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| 228 | # Test if compiling finished |
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| 229 | if [[ $? != 0 ]] ; then |
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| 230 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
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| 231 | exit |
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| 232 | fi |
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| 233 | |
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| 234 | echo "Move inca.dat modipsl/bin" |
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| 235 | if [[ -f $modipsl/modeles/INCA/SIMULATIONS/$optchimie/inca.dat ]] ; then |
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| 236 | mv $modipsl/modeles/INCA/SIMULATIONS/$optchimie/inca.dat $modipsl/bin/inca_${resol_atm_3d}_${optmode}_${optchimie}.dat ; |
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| 237 | # cp $modipsl/bin/inca_${resol_atm_3d}.dat inca.dat; |
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| 238 | else |
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| 239 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
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| 240 | exit |
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| 241 | fi |
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| 242 | |
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| 243 | |
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| 244 | cd $modipsl/modeles/LMDZ |
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| 245 | # Compile LMDZ regular lat-lon exectuable |
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| 246 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm_3d}" |
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| 247 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm_3d}" >> $outfile |
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| 248 | |
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| 249 | echo ./makelmdz_fcm -d ${resol_atm_3d} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -arch_path $arch_path -j 8 $full_flag gcm >> $outfile |
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| 250 | ./makelmdz_fcm -d ${resol_atm_3d} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -arch_path $arch_path -j 8 $full_flag gcm >> $outfile 2>&1 |
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| 251 | # Test if compiling finished |
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| 252 | if [[ $? != 0 ]] ; then |
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| 253 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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| 254 | exit |
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| 255 | fi |
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| 256 | |
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| 257 | # # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
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| 258 | # echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm_3d}" |
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| 259 | # echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm_3d}" >> $outfile |
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| 260 | # |
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| 261 | # echo ./makelmdz_fcm -d ${resol_atm_3d} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_flag ce0l >> $outfile |
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| 262 | # ./makelmdz_fcm -d ${resol_atm_3d} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_flag ce0l >> $outfile 2>&1 |
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| 263 | # # Test if compiling finished |
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| 264 | # if [[ $? != 0 ]] ; then |
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| 265 | # echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
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| 266 | # exit |
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| 267 | # fi |
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| 268 | # |
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| 269 | # Find executable suffix |
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| 270 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
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| 271 | suffix=_${resol_atm_3d}_phylmd_seq_orch_inca |
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| 272 | else |
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| 273 | suffix=_${resol_atm_3d}_phylmd_para_mem_orch_inca |
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| 274 | fi |
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| 275 | echo suffix = $suffix |
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| 276 | |
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| 277 | # Move executables to modipsl/bin folder |
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| 278 | echo "Move gcm.e and ce0l executable to modipsl/bin" |
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| 279 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix}.e ] ; then mv $modipsl/modeles/LMDZ/bin/gcm${suffix}.e $modipsl/bin/gcm_${resol_atm_3d}_${optmode}_${optchimie}.e ; fi |
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| 280 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix}.e ] ; then mv $modipsl/modeles/LMDZ/bin/ce0l${suffix}.e $modipsl/bin/ce0l_${resol_atm_3d}_${optmode}_${optchimie}.e ; fi |
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| 281 | |
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| 282 | fi |
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| 283 | |
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| 284 | |
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| 285 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
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| 286 | echo; echo "ALL COMPILING FINISHED" |
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| 287 | |
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| 288 | date |
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| 289 | exit |
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| 290 | |
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| 291 | |
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