source: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/inca.driver @ 3161

#!/bin/ksh

#D- Driver du script pour INCA
#-----------------------------------------------------------------
function INCA_sed_replace
{
    IGCM_debug_PushStack "INCA_sed_replace"

    sed -e "s/${2}/${3}/" ${1} > ${1}.tmp
    RET=$?
    echo "INCA_sed : ${1} ${2} ${3}"
    \mv ${1}.tmp ${1}

    IGCM_debug_PopStack "INCA_sed_replace"
    return $RET
}
#-----------------------------------------------------------------
function CHM_Initialize
{
    IGCM_debug_PushStack "CHM_Initialize"

    RESOL_CHM=$( echo $RESOL | awk "-Fx" '{print $2}' | awk "-FD" '{print $2}')

    [ -f ${SUBMIT_DIR}/../.resol ] && eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) || RESOL_ATM_3D=96x95x19
    RESOL_CHM_Z=$( echo ${RESOL_ATM_3D} | awk "-Fx" '{print $3}' | awk "-F-" '{print $1}')
    echo 'resol chimie', $RESOL_CHM

    [ -f ${SUBMIT_DIR}/../.chimie ] && eval $(grep CHEM ${SUBMIT_DIR}/../.chimie) 
    INCA_sed_replace ${SUBMIT_DIR}/config.card \${CHEM} ${CHEM}
    echo "INCA Tag : LMDZ-INCA" ${config_UserChoices_TagName}

    ##- LMDZ physics version
    ##  Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics) 
    if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
        LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
    else
        LMDZ_Physics=AP
    fi
    echo LMDZ physics version : ${LMDZ_Physics}


    for frequency in ${config_CHM_WriteFrequency} ; do
        case ${frequency} in
            1M|1m) freq_output=1mo ;;
        esac
        case ${frequency} in
            1D|1d) freq_output=1d ;;
        esac
    done



    IGCM_debug_PopStack "CHM_Initialize"
}

#-----------------------------------------------------------------
function CHM_Update
{
    IGCM_debug_PushStack "CHM_Update"

    case ${CHEM} in 
        AER)
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml forcage     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml aero        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml chemistry   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml emissions   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml species     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml dvel        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml washout     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml reacflux    output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml invariants  output_freq ${freq_output}

            if [ X${LMDZ_Physics} = X"AP" ] ; then
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aero
            else
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aeNP
            fi
        ;;
        DUSS)
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml forcage     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml aero        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml emissions   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml species     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml vegetation  output_freq ${freq_output}
            if [ X${LMDZ_Physics} = X"AP" ] ; then
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aero
            else
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aeNP
            fi
        ;;
        NMHC) 
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml reacflux    output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml emissions   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml chemistry   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml dvel        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml washout     output_freq ${freq_output}
            IGCM_comp_modifyDefFile nonblocker run.def config_inca chem
            ;;
        NMHC_AER)
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml forcage     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml aero        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml chemistry   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml emissions   output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml dvel        output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml washout     output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml reacflux    output_freq ${freq_output}
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml vegetation  output_freq ${freq_output}
            if [ X${LMDZ_Physics} = X"AP" ] ; then
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aero
            else
                IGCM_comp_modifyDefFile nonblocker run.def config_inca aeNP
            fi
        ;;
        GES)
            IGCM_comp_modifyXmlFile nonblocker file_def_inca.xml emissions   output_freq ${freq_output}
            IGCM_comp_modifyDefFile nonblocker run.def config_inca chem
        esac




    # inca.def : Activate reading of 10m wind in files if LMDZ_10m_winds=n in inca.card
    if [ ! X${inca_UserChoices_LMDZ_10m_winds} = X ] ; then
        IGCM_comp_modifyDefFile nonblocker inca.def LMDZ_10m_winds  ${inca_UserChoices_LMDZ_10m_winds}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def LMDZ_10m_winds  n
    fi

    # inca.def : choose write frequency for inca_avgr in inca.card
    if [ ! X${inca_UserChoices_freq_write_chem} = X ] ; then
        IGCM_comp_modifyDefFile nonblocker inca.def freq_write_chem  ${inca_UserChoices_freq_write_chem}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def  freq_write_chem  86400
    fi

    #inca.def : choose aerosol effect with feedback variable
    if [ ! X${inca_UserChoices_feedb} = X ] ; then
        IGCM_comp_modifyDefFile nonblocker inca.def  feedb  ${inca_UserChoices_feedb}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def feedb  0
    fi
    
    #inca.def : choose coupled model with orchidee  
    if [ ! X${inca_UserChoices_CoupOrchInca} = X ]; then 
        IGCM_comp_modifyDefFile nonblocker inca.def CoupOrchInca ${inca_UserChoices_CoupOrchInca}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def CoupOrchInca n
    fi

    #inca.def : choose sedimentation schema 
    if [ ! X${inca_UserChoices_multilayer_sedim} = X ]; then 
        IGCM_comp_modifyDefFile nonblocker inca.def multilayer_sediment ${inca_UserChoices_multilayer_sedim}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def multilayer_sediment y
    fi

    #inca.def : choose calcul interactif des diagnostiques flux chimique ou non  
    if [ ! X${inca_UserChoices_calcul_flux} = X ]; then 
        IGCM_comp_modifyDefFile nonblocker inca.def calcul_flux ${inca_UserChoices_calcul_flux}
    else
        IGCM_comp_modifyDefFile nonblocker inca.def calcul_flux n
    fi

    #inca.def : choose output library 
    if [  X${inca_UserChoices_XIOS} = Xy ] ; then
        IGCM_comp_modifyDefFile nonblocker inca.def  XIOS_INCA_OK  y
    else
        IGCM_comp_modifyDefFile nonblocker inca.def  XIOS_INCA_OK n
    fi

    if [  X${inca_UserChoices_IOIPSL} = Xy ] ; then
        IGCM_comp_modifyDefFile nonblocker inca.def  IOIPSL_INCA_OK  y
    else
        IGCM_comp_modifyDefFile nonblocker inca.def  IOIPSL_INCA_OK n
    fi


    if [  X${inca_UserChoices_10m_winds_method} = X ] ; then
    IGCM_comp_modifyDefFile nonblocker inca.def  10m_winds_method  threshold
    else
    IGCM_comp_modifyDefFile nonblocker inca.def  10m_winds_method ${inca_UserChoices_10m_winds_method}
    fi



    if [ X${inca_UserChoices_XIOS}  = Xy ] ; then
    # Add include of INCA context in iodef.xml
    # In iodef.xml add on next line after "COMPONENT CONTEXT"
    #  <context id="inca" src="./context_inca.xml"/>
        echo '<context id="inca" src="./context_inca.xml"/>' > add.tmp
        cp iodef.xml iodef.xml.tmp
        sed -e "/COMPONENT CONTEXT/r add.tmp" \
            iodef.xml.tmp > iodef.xml
        rm iodef.xml.tmp add.tmp
    fi

    # Add LongName as global attribute in XIOS output files (if LongName is not empty)
    if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
        listfile=$(ls file_def*inca.xml)
        echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
        for file in ${listfile}
        do
            cp ${file} ${file}.tmp
            sed -e "/<file id/r add.tmp" \
                ${file}.tmp > ${file}
            rm ${file}.tmp 
        done
        rm add.tmp
    fi

    IGCM_debug_PopStack "CHM_Update"
}

#-----------------------------------------------------------------
function CHM_Finalize
{
    IGCM_debug_PushStack "CHM_Finalize"

    echo FINALIZE CHM !!!
#
#    IGCM_sys_Mkdir ${R_OUT_EXE}
#    cd ${MODIPSL}
#    tar cf src_${config_UserChoices_JobName}.tar  modeles
#    IGCM_sys_Mv src_${config_UserChoices_JobName}.tar ${R_OUT_EXE}/.
#    cd -
#

    IGCM_debug_PopStack "CHM_Finalize"
}