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source: CONFIG/UNIFORM/v6/LMDZOR_v6.2/GENERAL/DRIVER/lmdz.driver @ 4798

Last change on this file since 4798 was 4798, checked in by jgipsl, 4 years ago
Corrected bug as done in [4795] done by C. Ethe.
File size: 30.8 KB

Line
1	#!/bin/ksh
2	#-----------------------------------------------------------------
3	function ATM_Initialize
4	{
5	IGCM_debug_PushStack "ATM_Initialize"
6
7	# Read the resolution from the variables ResolAtm set in config.card UserChoices section or from .resol file
8	if [ X$ResolAtm != X ] ; then
9	# ResolAtm is set in config.card
10	RESOL_ATM_3D=${ResolAtm}
11	elif [ -f ${SUBMIT_DIR}/../.resol ] ; then
12	# ResolAtm was not set in config.card, try to read .resol file
13	eval $(grep RESOL_ATM_3D ${SUBMIT_DIR}/../.resol) \|\| RESOL_ATM_3D=96x95x39
14	else
15	IGCM_debug_Exit "ResolAtm is not set in config.card and the .resol file does not exist."
16	IGCM_debug_Verif_Exit
17	fi
18
19	IGCM_debug_Print 1 "The atomsopheric resolution is ${RESOL_ATM_3D} "
20
21	RESOL_ATM_Z=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $3}' )
22	RESOL_ATM_X=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $1}' )
23	RESOL_ATM_Y=$( echo ${RESOL_ATM_3D} \| awk "-Fx" '{print $2}' )
24	RESOL_ATM_XY="${RESOL_ATM_X}x${RESOL_ATM_Y}"
25	RESOL_ATM=LMD${RESOL_ATM_X}${RESOL_ATM_Y}
26
27	##- LMDZ physics version
28	## Read LMDZ_Physics option in lmdz.card, if not present take default value AP (old physics)
29	if [ ! X${lmdz_UserChoices_LMDZ_Physics} = X ] ; then
30	LMDZ_Physics=${lmdz_UserChoices_LMDZ_Physics}
31	else
32	LMDZ_Physics=AP
33	fi
34	echo LMDZ physics version : ${LMDZ_Physics}
35
36	##- Create_etat0_limit version
37	## Define variable CREATE only if it is set in lmdz.card section UserChoices.
38	## This variable is only used in lmdz.card to choose input files.
39	if [ ! X${lmdz_UserChoices_CREATE} = X ] ; then
40	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices CREATE
41	CREATE=${lmdz_UserChoices_CREATE}
42	echo create_etat0_limit version : ${CREATE}
43	fi
44
45
46	## - LMDZ choice of config.def file
47	## ConfType must be set in lmdz.card
48	ConfType=${lmdz_UserChoices_ConfType}
49
50	##- LMDZ output level, to be set in lmdz.card
51	if [ X${lmdz_UserChoices_OutLevel} = X ] ; then
52	# OutLevel is not set. Take default value low.
53	OutLevel=low
54	else
55	OutLevel=${lmdz_UserChoices_OutLevel}
56	fi
57
58	##-- Output frequency purpose ....
59	##-- Initialisation ....
60	ok_mensuel=.FALSE.
61	ok_journe=.FALSE.
62	ok_hf=.FALSE.
63	ok_hf3h=.FALSE.
64	ok_hf3hm=.FALSE.
65	ok_stn=.FALSE.
66
67
68	case ${config_UserChoices_PeriodLength} in
69	1Y\|1y\|1M\|1m) ok_mensuel=.TRUE. ;;
70	5D\|5d\|1D\|1d) ok_journe=.TRUE. ;;
71	esac
72
73	for frequency in ${config_ATM_WriteFrequency} ; do
74	case ${frequency} in
75	1M\|1m) ok_mensuel=.TRUE. ;;
76	esac
77	case ${frequency} in
78	5D\|5d\|1D\|1d) ok_journe=.TRUE. ;;
79	esac
80	case ${frequency} in
81	HF\|hf) ok_hf=.TRUE. ;;
82	esac
83	case ${frequency} in
84	HF3h\|hf3h) ok_hf3h=.TRUE. ;;
85	esac
86	case ${frequency} in
87	HF3hm\|hf3hm) ok_hf3hm=.TRUE. ;;
88	esac
89	case ${frequency} in
90	STN\|stn) ok_stn=.TRUE. ;;
91	esac
92	done
93
94
95	## Read LMDZ_COSP_OK in lmdz.card
96	if [ X${lmdz_UserChoices_LMDZ_COSP_OK} = Xy ] ; then
97	## LMDZ_COSP_OK=y, now read all other COSP variables
98	## Read LMDZ_COSP_monthly in lmdz.card
99	if [ X${lmdz_UserChoices_LMDZ_COSP_monthly} = Xy ] ; then
100	LMDZ_COSP_monthly=.TRUE.
101	else
102	LMDZ_COSP_monthly=.FALSE.
103	fi
104	## Read LMDZ_COSP_daily in lmdz.card
105	if [ X${lmdz_UserChoices_LMDZ_COSP_daily} = Xy ] ; then
106	LMDZ_COSP_daily=.TRUE.
107	else
108	LMDZ_COSP_daily=.FALSE.
109	fi
110	## Read LMDZ_COSP_hf in lmdz.card
111	if [ X${lmdz_UserChoices_LMDZ_COSP_hf} = Xy ] ; then
112	LMDZ_COSP_hf=.TRUE.
113	else
114	LMDZ_COSP_hf=.FALSE.
115	fi
116	else
117	# LMDZ_COSP_OK=n : All cosp output are deactivated
118	LMDZ_COSP_monthly=.FALSE.
119	LMDZ_COSP_daily=.FALSE.
120	LMDZ_COSP_hf=.FALSE.
121	fi
122
123	## Read LMDZ_NMC_monthly in lmdz.card
124	if [ X${lmdz_UserChoices_LMDZ_NMC_monthly} = Xy ] ; then
125	LMDZ_NMC_monthly=.TRUE.
126	else
127	LMDZ_NMC_monthly=.FALSE.
128	fi
129
130	## Read LMDZ_NMC_daily in lmdz.card
131	if [ X${lmdz_UserChoices_LMDZ_NMC_daily} = Xy ] ; then
132	LMDZ_NMC_daily=.TRUE.
133	else
134	LMDZ_NMC_daily=.FALSE.
135	fi
136
137	## Read LMDZ_NMC_hf in lmdz.card
138	if [ X${lmdz_UserChoices_LMDZ_NMC_hf} = Xy ] ; then
139	LMDZ_NMC_hf=.TRUE.
140	else
141	LMDZ_NMC_hf=.FALSE.
142	fi
143
144	IGCM_debug_PopStack "ATM_Initialize"
145	}
146
147	#-----------------------------------------------------------------
148	function ATM_Update
149	{
150	IGCM_debug_PushStack "ATM_Update"
151
152	##-- GHG forcing :
153	## If forcing file exist in run directory, read values for the current year
154	## and set in config.def. If not use the default value set in config.def
155
156	# Read value for solaire from file SOLARANDVOLCANOES.txt. If file not existing, take DEFAULT value from file.
157	IGCM_debug_Print 1 "Note that the solaire parameter is here below changed but it is only used by LMDZ for old physics(AP and NPv3.2)"
158	IGCM_debug_Print 1 "For newer physics with iflag_rrtm=1 and ok_suntime_rrtm=y, the solar constant is instead taken from solarforcing.nc file"
159	if [ -f SOLARANDVOLCANOES.txt ] ; then
160	value=`grep Annee_${year} SOLARANDVOLCANOES.txt \| awk -F= '{print $2}'`
161	if [ X"${value}" = X ] ; then
162	# The grep returned empty variable, stop execution
163	IGCM_debug_Exit "The file SOLARANDVOLCANOES.txt do not contain the current year."
164	IGCM_debug_Verif_Exit
165	fi
166	else
167	value=DEFAULT
168	fi
169	IGCM_comp_modifyDefFile nonblocker config.def solaire $value
170
171	# Read value for eccentricity from file Eccentricity.txt. If file not existing, take DEFAULT value from file.
172	if [ -f Eccentricity.txt ] ; then
173	value=`grep Annee_${year} Eccentricity.txt \| awk -F= '{print $2}'`
174	if [ X"${value}" = X ] ; then
175	# The grep returned empty variable, stop execution
176	IGCM_debug_Exit "The file Eccentricity.txt do not contain the current year."
177	IGCM_debug_Verif_Exit
178	fi
179	else
180	value=DEFAULT
181	fi
182	IGCM_comp_modifyDefFile nonblocker config.def R_ecc $value
183
184	# Read value for obliquity from file Obliquity.txt. If file not existing, take DEFAULT value from file.
185	if [ -f Obliquity.txt ] ; then
186	value=`grep Annee_${year} Obliquity.txt \| awk -F= '{print $2}'`
187	if [ X"${value}" = X ] ; then
188	# The grep returned empty variable, stop execution
189	IGCM_debug_Exit "The file Obliquity.txt do not contain the current year."
190	IGCM_debug_Verif_Exit
191	fi
192	else
193	value=DEFAULT
194	fi
195	IGCM_comp_modifyDefFile nonblocker config.def R_incl $value
196
197	# Read value for perihelie from file Perihelie.txt. If file not existing, take DEFAULT value from file.
198	if [ -f Perihelie.txt ] ; then
199	value=`grep Annee_${year} Perihelie.txt \| awk -F= '{print $2}'`
200	if [ X"${value}" = X ] ; then
201	# The grep returned empty variable, stop execution
202	IGCM_debug_Exit "The file Perihelie.txt do not contain the current year."
203	IGCM_debug_Verif_Exit
204	fi
205	else
206	value=DEFAULT
207	fi
208	IGCM_comp_modifyDefFile nonblocker config.def R_peri $value
209
210	# Read value for co2_ppm from file CO2.txt. If file not existing, take DEFAULT value from file.
211	# Calculate co2_ppm_per as co2_ppm*4.
212	if [ -f CO2.txt ] ; then
213	value=`grep Annee_${year} CO2.txt \| awk -F= '{print $2}'`
214	if [ X"${value}" = X ] ; then
215	# The grep returned empty variable, stop execution
216	IGCM_debug_Exit "The file CO2.txt do not contain the current year."
217	IGCM_debug_Verif_Exit
218	fi
219	value4=`grep Annee_${year} CO2.txt \| awk -F= '{print $2 * 4}'`
220	else
221	value=DEFAULT
222	value4=DEFAULT
223	fi
224	IGCM_comp_modifyDefFile nonblocker config.def co2_ppm $value
225	IGCM_comp_modifyDefFile nonblocker config.def co2_ppm_per $value4
226
227
228	# Read value for CH4_ppb from file CH4.txt. If file not existing, take DEFAULT value from file.
229	if [ -f CH4.txt ] ; then
230	value=`grep Annee_${year} CH4.txt \| awk -F= '{print $2}'`
231	if [ X"${value}" = X ] ; then
232	# The grep returned empty variable, stop execution
233	IGCM_debug_Exit "The file CH4.txt do not contain the current year."
234	IGCM_debug_Verif_Exit
235	fi
236	else
237	value=DEFAULT
238	fi
239	IGCM_comp_modifyDefFile nonblocker config.def CH4_ppb $value
240
241
242	# Read value for N2O_ppb from file N2O.txt. If file not existing, take DEFAULT value from file.
243	if [ -f N2O.txt ] ; then
244	value=`grep Annee_${year} N2O.txt \| awk -F= '{print $2}'`
245	if [ X"${value}" = X ] ; then
246	# The grep returned empty variable, stop execution
247	IGCM_debug_Exit "The file N2O.txt do not contain the current year."
248	IGCM_debug_Verif_Exit
249	fi
250	else
251	value=DEFAULT
252	fi
253	IGCM_comp_modifyDefFile nonblocker config.def N2O_ppb $value
254
255	# Read value for CFC11_ppt from file CFC11.txt. If file not existing, take DEFAULT value from file.
256	if [ -f CFC11.txt ] ; then
257	value=`grep Annee_${year} CFC11.txt \| awk -F= '{print $2}'`
258	if [ X"${value}" = X ] ; then
259	# The grep returned empty variable, stop execution
260	IGCM_debug_Exit "The file CFC11.txt do not contain the current year."
261	IGCM_debug_Verif_Exit
262	fi
263	else
264	value=DEFAULT
265	fi
266	IGCM_comp_modifyDefFile nonblocker config.def CFC11_ppt $value
267
268
269	# Read value for CFC12_ppt from file CFC12.txt. If file not existing, take DEFAULT value from file.
270	if [ -f CFC12.txt ] ; then
271	value=`grep Annee_${year} CFC12.txt \| awk -F= '{print $2}'`
272	if [ X"${value}" = X ] ; then
273	# The grep returned empty variable, stop execution
274	IGCM_debug_Exit "The file CFC12.txt do not contain the current year."
275	IGCM_debug_Verif_Exit
276	fi
277	else
278	value=DEFAULT
279	fi
280	IGCM_comp_modifyDefFile nonblocker config.def CFC12_ppt $value
281
282
283	## Coupling Time Step : Take value of FreqCoupling set in oasis.card or if it is not set, take default value 86400
284	LMDZ_t_coupl=${oasis_UserChoices_FreqCoupling:-86400}
285	IGCM_debug_Print 3 "LMDZ_t_coupl " ${LMDZ_t_coupl}
286	IGCM_comp_modifyDefFile nonblocker config.def t_coupl ${LMDZ_t_coupl}
287
288	##-- Add special treatement for CARBON CYCLE
289	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
290	ATM_Carbon_Update
291	fi
292
293
294	##-- Set LMDZ_COSP_daily1979=y in section UserChoices in lmdz.card to activate
295	## COSP daily output for years 1979 and later (mandatory for historical CMIP5 run).
296	if ([ X"${lmdz_UserChoices_LMDZ_COSP_daily1979}" = X"y" ] && [ ${year} -ge 1979 ]) ; then
297	LMDZ_COSP_daily=.TRUE.
298	fi
299
300	## Modifiy
301	IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth enabled ${ok_mensuel}
302	if [ X${OutLevel} = Xlow ] ; then
303	IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 5
304	elif [ X${OutLevel} = Xmedium ] ; then
305	IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 6
306	elif [ X${OutLevel} = Xhigh ] ; then
307	IGCM_comp_modifyXmlFile nonblocker file_def_histmth_lmdz.xml histmth output_level 7
308	fi
309
310	IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday enabled ${ok_journe}
311
312	if [ X${OutLevel} = Xlow ] \|\| [ X${OutLevel} = Xmedium ] ; then
313	IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 2
314	else
315	IGCM_comp_modifyXmlFile nonblocker file_def_histday_lmdz.xml histday output_level 5
316	fi
317
318	IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf enabled ${ok_hf}
319
320	if [ X${OutLevel} = Xlow ] ; then
321	IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 5
322	elif [ X${OutLevel} = Xmedium ] ; then
323	IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 6
324	elif [ X${OutLevel} = Xhigh ] ; then
325	IGCM_comp_modifyXmlFile nonblocker file_def_histhf_lmdz.xml histhf output_level 7
326	fi
327
328	IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
329	IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
330
331	IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn}
332
333	IGCM_comp_modifyXmlFile nonblocker file_def_histmthNMC_lmdz.xml histmthNMC enabled ${LMDZ_NMC_monthly}
334	IGCM_comp_modifyXmlFile nonblocker file_def_histdayNMC_lmdz.xml histdayNMC enabled ${LMDZ_NMC_daily}
335	IGCM_comp_modifyXmlFile nonblocker file_def_histhfNMC_lmdz.xml histhfNMC enabled ${LMDZ_NMC_hf}
336
337	IGCM_comp_modifyXmlFile nonblocker file_def_histmthCOSP_lmdz.xml histmthCOSP enabled ${LMDZ_COSP_monthly}
338	IGCM_comp_modifyXmlFile nonblocker file_def_histdayCOSP_lmdz.xml histdayCOSP enabled ${LMDZ_COSP_daily}
339	IGCM_comp_modifyXmlFile nonblocker file_def_histhfCOSP_lmdz.xml histhfCOSP enabled ${LMDZ_COSP_hf}
340
341	# Activate the histstrataer output file only for configuration with interactive stratospheric aersols
342	# done by setting the key word LMDZ_strataero=y in lmdz.card
343	if [ X${lmdz_UserChoices_LMDZ_strataero} = Xy ] ; then
344	IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .TRUE.
345	IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled .TRUE.
346	else
347	IGCM_comp_modifyXmlFile nonblocker file_def_histstrataer_lmdz.xml histstrataer enabled .FALSE.
348	IGCM_comp_modifyXmlFile nonblocker file_def_histdaystrataer_lmdz.xml histdaystrataer enabled .FALSE.
349	fi
350
351
352	## run.def parameters
353
354
355	##-- Remise ou non a zero de la date initiale de LMDZ pour le fichier run.def
356	if [ ${CumulPeriod} -eq 1 ] ; then
357	IGCM_comp_modifyDefFile blocker run.def raz_date 1
358	else
359	IGCM_comp_modifyDefFile blocker run.def raz_date 0
360	fi
361
362	##-- Calendar type for LMDZ and create_etat0_limit
363	case ${config_UserChoices_CalendarType} in
364	leap\|gregorian)
365	IGCM_comp_modifyDefFile blocker run.def calend gregorian ;;
366	noleap)
367	IGCM_comp_modifyDefFile blocker run.def calend earth_365d ;;
368	360d)
369	IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;;
370	*)
371	IGCM_comp_modifyDefFile blocker run.def calend earth_360d ;;
372	esac
373
374	IGCM_comp_modifyDefFile blocker run.def dayref ${InitDay}
375	IGCM_comp_modifyDefFile blocker run.def nday ${PeriodLengthInDays}
376
377	# Set anneeref different for gcm and ce0l
378	# Test if executable create_etat0_limit is present and lmdz.x is not present
379	if [ -f create_etat0_limit* ] \|\| [ -f ce0l* ] && [ ! -f lmdz.x ] ; then
380	# for case ce0l : always take current year
381	IGCM_comp_modifyDefFile blocker run.def anneeref ${year}
382
383	# Temporary, set use_filtre_fft=n because we now use dyn3d for ce0l version where fft is not implemented.
384	# In more recent versions of LMDZ, this will not be needed.
385	IGCM_comp_modifyDefFile force run.def use_filtre_fft n
386	else
387	# for case gcm : take first year of simulation
388	IGCM_comp_modifyDefFile blocker run.def anneeref ${InitYear}
389	fi
390
391	## Determine from the variable ListOfComponents in config.card coupling to external models
392	## and set corresponding parameters in run.def
393	echo ListOfComponents now running : ${config_ListOfComponents[*]}
394
395	if [ X${config_ListOfComponents_SRF} = Xorchidee ] ; then
396	echo "Activate ORCHIDEE, set VEGET=y in run.def"
397	IGCM_comp_modifyDefFile blocker run.def VEGET y
398	else
399	echo "No ORCHIDEE, set VEGET=n in run.def"
400	IGCM_comp_modifyDefFile blocker run.def VEGET n
401	fi
402
403	if [ X${config_ListOfComponents_CPL} = Xoasis ] ; then
404	echo "Activate coupling to ocean, set type_ocean=couple in run.def"
405	IGCM_comp_modifyDefFile blocker run.def type_ocean couple
406	else
407	echo "LMDZ is running in forced mode without ocean model, set type_ocean=force in run.def"
408	IGCM_comp_modifyDefFile nonblocker run.def type_ocean force
409	fi
410
411	if [ X${config_ListOfComponents_CHM} = Xinca ] ; then
412	echo "Activate coupling to INCA, set type_trac=inca in run.def"
413	IGCM_comp_modifyDefFile blocker run.def type_trac inca
414	elif [ X${config_ListOfComponents_CHM} = Xreprobus ] ; then
415	echo "Activate coupling to REPROBUS, set type_trac=repr in run.def"
416	IGCM_comp_modifyDefFile blocker run.def type_trac repr
417	IGCM_comp_modifyDefFile blocker run.def config_inca none
418	elif [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
419	echo "ESM config, set type_trac=co2i in run.def"
420	IGCM_comp_modifyDefFile blocker run.def type_trac co2i
421	IGCM_comp_modifyDefFile blocker run.def config_inca none
422	else
423	echo "No coupling to chemistry model, set type_trac=lmdz in run.def"
424	IGCM_comp_modifyDefFile blocker run.def type_trac lmdz
425	IGCM_comp_modifyDefFile blocker run.def config_inca none
426	fi
427
428
429	# run.def : Activate the call to phytrac
430	if [ ! X${lmdz_UserChoices_iflag_phytrac} = X ]; then
431	IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac ${lmdz_UserChoices_iflag_phytrac}
432	elif [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
433	IGCM_comp_modifyDefFile blocker run.def iflag_phytrac 1
434	else
435	IGCM_comp_modifyDefFile nonblocker run.def iflag_phytrac DEFAULT
436	fi
437
438	# run.def : Activate the new calving
439	if [ ! X${lmdz_UserChoices_cpl_old_calving} = X ]; then
440	IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving ${lmdz_UserChoices_cpl_old_calving}
441	else
442	IGCM_comp_modifyDefFile nonblocker run.def cpl_old_calving y
443	fi
444
445	# physiq.def : Activate the call to phytrac
446	if [ ! X${lmdz_UserChoices_ok_bug_cv_trac} = X ]; then
447	IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac ${lmdz_UserChoices_ok_bug_cv_trac}
448	else
449	IGCM_comp_modifyDefFile nonblocker physiq.def ok_bug_cv_trac n
450	fi
451
452	# config.def : Activate aerosol strato
453	if [ ! X${lmdz_UserChoices_flag_aerosol_strat} = X ]; then
454	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat ${lmdz_UserChoices_flag_aerosol_strat}
455	else
456	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol_strat DEFAULT
457	fi
458
459	# config.def : Activate direct radiative effect if ok_ade=y
460	if [ ! X${lmdz_UserChoices_ok_ade} = X ]; then
461	IGCM_comp_modifyDefFile nonblocker config.def ok_ade ${lmdz_UserChoices_ok_ade}
462	else
463	IGCM_comp_modifyDefFile nonblocker config.def ok_ade n
464	fi
465
466	# config.def : Activate indirect radiative effect if ok_aie=y
467	if [ ! X${lmdz_UserChoices_ok_aie} = X ]; then
468	IGCM_comp_modifyDefFile nonblocker config.def ok_aie ${lmdz_UserChoices_ok_aie}
469	else
470	IGCM_comp_modifyDefFile nonblocker config.def ok_aie n
471	fi
472
473	# config.def : Activate online aerosol coupled model if aerosol_couple=y
474	if [ ! X${lmdz_UserChoices_aerosol_couple} = X ]; then
475	IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple ${lmdz_UserChoices_aerosol_couple}
476	else
477	IGCM_comp_modifyDefFile nonblocker config.def aerosol_couple n
478	fi
479
480	# config.def : Activate online Ozone chemistry coupled model if chemistry_couple=y
481	if [ ! X${lmdz_UserChoices_chemistry_couple} = X ]; then
482	IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple ${lmdz_UserChoices_chemistry_couple}
483	else
484	IGCM_comp_modifyDefFile nonblocker config.def chemistry_couple n
485	fi
486
487	# config.def : Activate reading of ozone in climatology if read_climoz=2
488	if [ ! X${lmdz_UserChoices_read_climoz} = X ]; then
489	IGCM_comp_modifyDefFile nonblocker config.def read_climoz ${lmdz_UserChoices_read_climoz}
490	else
491	IGCM_comp_modifyDefFile nonblocker config.def read_climoz 0
492	fi
493
494	# config.def : Choose aerosol use in radiative effect
495	# type of coupled aerosol =1 (default) =2 => bc only =3 => pom only =4 => seasalt only
496	# =5 => dust only =6 => all aerosol
497	if [ ! X${lmdz_UserChoices_flag_aerosol} = X ]; then
498	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol ${lmdz_UserChoices_flag_aerosol}
499	else
500	IGCM_comp_modifyDefFile nonblocker config.def flag_aerosol 0
501	fi
502
503	# config.def : Activate calcul of Cloud droplet number concentration if ok_cdnc=y
504	if [ ! X${lmdz_UserChoices_ok_cdnc} = X ]; then
505	IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc ${lmdz_UserChoices_ok_cdnc}
506	else
507	IGCM_comp_modifyDefFile nonblocker config.def ok_cdnc n
508	fi
509
510	# config.def : Activate COSP
511	if [ ! X${lmdz_UserChoices_LMDZ_COSP_OK} = X ]; then
512	IGCM_comp_modifyDefFile nonblocker config.def ok_cosp ${lmdz_UserChoices_LMDZ_COSP_OK}
513	else
514	IGCM_comp_modifyDefFile nonblocker config.def ok_cosp n
515	fi
516
517	# config.def : Modify parameter pmagic if it is set in lmdz.card
518	if [ ! X${lmdz_UserChoices_pmagic} = X ]; then
519	IGCM_comp_modifyDefFile nonblocker config.def pmagic ${lmdz_UserChoices_pmagic}
520	else
521	# Take default value set in config.def
522	IGCM_comp_modifyDefFile nonblocker config.def pmagic DEFAULT
523	fi
524
525	if [ X${config_UserChoices_ConfigType} = XESMCO2 ] ; then
526	# Set carbon cycle parameters according to parmeters in lmdz.card
527	IGCM_comp_modifyDefFile blocker config.def level_coupling_esm 2
528	IGCM_comp_modifyDefFile blocker config.def carbon_cycle_cpl ${lmdz_UserChoices_carbon_cycle_cpl}
529	IGCM_comp_modifyDefFile blocker config.def carbon_cycle_tr ${lmdz_UserChoices_carbon_cycle_tr}
530	IGCM_comp_modifyDefFile blocker config.def carbon_cycle_rad ${lmdz_UserChoices_carbon_cycle_rad}
531	else
532	# Take default value set in config.def
533	IGCM_comp_modifyDefFile nonblocker config.def level_coupling_esm DEFAULT
534	IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_cpl DEFAULT
535	IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_tr DEFAULT
536	IGCM_comp_modifyDefFile nonblocker config.def carbon_cycle_rad DEFAULT
537	fi
538
539	# physiq.def : Modify parameter tau_gl if it is set in lmdz.card
540	if [ ! X${lmdz_UserChoices_tau_gl} = X ]; then
541	IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl ${lmdz_UserChoices_tau_gl}
542	else
543	# Take default value set in physiq.def
544	IGCM_comp_modifyDefFile nonblocker physiq.def tau_gl DEFAULT
545	fi
546
547
548	# guide.def : Activate nudging if ok_guide=y set in lmdz.card
549	if [ ! X${lmdz_UserChoices_ok_guide} = X ] ; then
550	IGCM_comp_modifyDefFile nonblocker guide.def ok_guide ${lmdz_UserChoices_ok_guide}
551	else
552	IGCM_comp_modifyDefFile nonblocker guide.def ok_guide n
553	fi
554
555
556	## Read ByPass_hgardfou_teta option in lmdz.card --> divide teta* by 2 if [ $ByPass_hgardfou_teta = 1 ]
557	ByPass_hgardfou_teta=${lmdz_UserChoices_ByPass_hgardfou_teta}
558	if [ X"${ByPass_hgardfou_teta}" = X"y" ] ; then
559	awk '{ if ($0 ~ /^teta.*=/) {split($0,a,"=") ; print a[1]"="a[2]/2"."} else print $0}' gcm.def > gcm.def.tmp
560	IGCM_sys_Mv gcm.def.tmp gcm.def
561	echo
562	IGCM_debug_Print 1 "ByPass_hgardfou_teta : ^teta*/2 in gcm.def"
563	echo
564	cat gcm.def
565	ByPass_hgardfou_teta=n
566	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_teta "${ByPass_hgardfou_teta}"
567	fi
568
569	## Read ByPass_hgardfou_mats option in lmdz.card --> purmats=y 2 if [ $ByPass_hgardfou_mats = 1 ]
570	ByPass_hgardfou_mats=${lmdz_UserChoices_ByPass_hgardfou_mats}
571	if [ X"${ByPass_hgardfou_mats}" = X"y" ] ; then
572	sed -e "s/^purmats=.*/purmats=y/" gcm.def > gcm.def.tmp
573	IGCM_sys_Mv gcm.def.tmp gcm.def
574	echo
575	IGCM_debug_Print 1 "ByPass_hgardfou_mats : purmats=y in gcm.def"
576	echo
577	cat gcm.def
578	ByPass_hgardfou_mats=n
579	IGCM_card_WriteOption ${SUBMIT_DIR}/COMP/lmdz.card UserChoices ByPass_hgardfou_mats "${ByPass_hgardfou_mats}"
580	fi
581
582	# Add include of LMDZ context in iodef.xml
583	# In iodef.xml add on the next line after "COMPONENT CONTEXT"
584	echo '<context id="LMDZ" src="./context_lmdz.xml"/>' > add.tmp
585	# Add inclusion of file context_input_lmdz.xml if this file exists
586	if [ -f context_input_lmdz.xml ] ; then
587	echo '<context id="LMDZ" src="./context_input_lmdz.xml"/>' >> add.tmp
588	fi
589	# Include xml files for output configuration if running with workflow CMIP6
590	if [ X"$( echo ${config_UserChoices_ExpType} \| grep CMIP6 )" != "X" ] ; then
591	echo '<context id="LMDZ" src="./ping_lmdz.xml"/>' >> add.tmp
592	echo '<context id="LMDZ" src="./dr2xml_lmdz.xml"/>' >> add.tmp
593	fi
594	cp iodef.xml iodef.xml.tmp
595	sed -e "/COMPONENT CONTEXT/r add.tmp" iodef.xml.tmp > iodef.xml
596	rm iodef.xml.tmp add.tmp
597
598	#Long Name as global attribute (if LongName is not empty)
599	if [ ! "X${config_UserChoices_LongName}" = "X" ] ; then
600	listfile=$(ls file_def*lmdz.xml)
601	echo "<variable id=\"LongName\" type=\"string\">${config_UserChoices_LongName}</variable>" > add.tmp
602	for file in ${listfile}
603	do
604	cp ${file} ${file}.tmp
605	sed -e "/<file id/r add.tmp" \
606	${file}.tmp > ${file}
607	rm ${file}.tmp
608	done
609	rm add.tmp
610	fi
611
612	#Compression level (if CompressionLevel is not empty)
613	if [ ! "X${config_UserChoices_CompressionLevel}" = "X" ] ; then
614	echo "NetCDF output files compression level is " ${config_UserChoices_CompressionLevel}
615	listfile=$(ls file_def*lmdz.xml)
616	for file in ${listfile}
617	do
618	sed -i -e "s/\(compression_level=\"\)[^\"]*\(\"\)/\1${config_UserChoices_CompressionLevel}\2/" ${file}
619	done
620	fi
621
622
623	IGCM_debug_PopStack "ATM_Update"
624	}
625
626	#-----------------------------------
627	function ATM_Finalize
628	{
629	IGCM_debug_PushStack "ATM_Finalize"
630
631	# Add special treatement for CARBON CYCLE
632	if [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"control" ] \|\| [ X"${lmdz_UserChoices_CARBON_CYCLE}" = X"historical" ] ; then
633	ATM_Carbon_Finalize
634	fi
635
636	echo FINALIZE ATM !
637
638	IGCM_debug_PopStack "ATM_Finalize"
639	}
640
641
642
643	function ATM_Carbon_Update
644	{
645	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
646
647	IGCM_debug_PushStack "ATM_Carbon_Update"
648
649	typeset InitPeriodCo2 InitDateBeginCo2 InitDateEndCo2
650	typeset CO2SBG CO2MBG CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
651	typeset PathCO2log
652	typeset PreviousLinelog LastPeriodDateBegin LastPeriodDateEnd LastDatesPeriod LastPREFIX
653
654	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"n" ] ) ; then
655	##--Initialization of fluxes to an undefined value at the first run
656	UndefinedValueCo2=-9999
657	InitPeriodCo2=0
658	InitDateBeginCo2=${UndefinedValueCo2}
659	InitYearCo2=$(( ${year} - 1 ))
660	InitDateEndCo2=${InitYearCo2}1231
661	fCO2_ff=${UndefinedValueCo2}
662	CO2SBG=${UndefinedValueCo2}
663	CO2LU=${UndefinedValueCo2}
664	CO2MBG=${UndefinedValueCo2}
665	CO2_ppm_prec=${UndefinedValueCo2}
666	# Get the initial value of atmosp. pco2
667	CO2_ppm=${lmdz_UserChoices_co2_init}
668
669	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
670	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
671
672	# Save CO2 values in ExeCpuLog variable contents 5 fields
673	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
674	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
675	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
676
677	# Get the path where the log file co2.log is
678	PathCO2log=${SUBMIT_DIR}
679	# Get Previous line in co2.log
680	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
681
682	else
683
684	# NEW parameter in config.card (even for Overule all restarts, you must modify the line after this comment ):
685	# !! NEW for Carbone cycle !! Path where to find old co2.log file for restart CO2.
686	#SubmitRestartPath=
687	if ( ${FirstInitialize} && [ X"${config_ATM_Restart}" = X"y" ] ) ; then
688	IGCM_card_DefineVariableFromOption ${SUBMIT_DIR}/config.card ATM SubmitRestartPath
689	PathCO2log=${config_ATM_SubmitRestartPath}
690	Date_r=$( IGCM_date_ConvertFormatToGregorian ${config_ATM_RestartDate} )
691	PreviousLinelog=$( grep ${Date_r} ${PathCO2log}/co2.log )
692
693	IGCM_sys_Cp ${SUBMIT_DIR}/co2.log.init ${SUBMIT_DIR}/co2.log
694	IGCM_sys_Chmod u+w ${SUBMIT_DIR}/co2.log
695
696	# Save Last Line of control in new co2.log file
697	InitPeriodCo2=0
698	InitDateBeginCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $2}' )
699	InitDateEndCo2=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $3}' )
700	fCO2_ff=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $6}' )
701	CO2SBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $8}' )
702	CO2LU=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $9}' )
703	CO2MBG=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $7}' )
704	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $5}' )
705	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
706
707	echo "${InitPeriodCo2} ${InitDateBeginCo2} ${InitDateEndCo2} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
708	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
709	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
710	else
711	# Get restart line in co2.log
712	PathCO2log=${SUBMIT_DIR}
713	PreviousLinelog=$( tail -1 ${PathCO2log}/co2.log )
714	# Get the value of atmosp. pco2 in co2.log
715	CO2_ppm=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
716	fi
717
718	fi
719
720	if [ ${lmdz_UserChoices_CARBON_CYCLE} = historical ] ; then
721	# Modify co2_ppm in config.def only for historical run
722	# If not historical run, keep co2_ppm value set earlier by IGCM_comp_modifyDefFile
723	IGCM_comp_modifyDefFile force config.def co2_ppm ${CO2_ppm}
724	fi
725	IGCM_debug_PopStack "ATM_Carbon_Update"
726	}
727
728
729	function ATM_Carbon_Finalize
730	{
731	# This fuction will be called only if CARBON_CYCLE is set to control or historical in lmdz.card
732
733	IGCM_debug_PushStack "ATM_Carbon_Finalize"
734
735	typeset CO2SBG_3V CO2SBG CO2MBG CO2SRF CO2LU CO2_ppm CO2_ppm_prec fCO2_ff
736
737	# Fossil fuel emission
738	if [ ${lmdz_UserChoices_CARBON_CYCLE} = control ] ; then
739	# For Control, no fossil fuel emission :
740	fCO2_ff=0
741	echo "Fossil Fuel for control run :" ${fCO2_ff}
742	else
743	# For historical, get the fossile fuel file :
744	fCO2_ff=$( gawk "{if (match(\$0,\"${year}\ *${month}\")) {print \$3}}" ${SUBMIT_DIR}/PARAM/CMIP5_gridcar_CO2_emissions_fossil_fuel_Andres_1751-2007_monthly_SC.txt )
745	echo "Fossil Fuel for historical run :" ${fCO2_ff}
746	fi
747
748	# Get the value of ocean carbon flux
749	CO2MBG=$( ${SUBMIT_DIR}/COMP/lmdz_analyse_pisces_out.awk ocean.output )
750	CO2MBG=$( echo ${CO2MBG} \| sed -e "s/ *//" )
751	echo "Ocean carbon flux :" ${CO2MBG}
752
753	# Get the value of land fluxes
754	set +A CO2SBG_3V -- $( ${SUBMIT_DIR}/COMP/lmdz_analyse_stomate_out.awk out_orchidee_0000 )
755	CO2SRF=$( echo ${CO2SBG_3V[0]} \| sed -e "s/ *//" )
756	CO2LU=$( echo ${CO2SBG_3V[1]} \| sed -e "s/ *//" )
757	CO2SBG=$( echo ${CO2SBG_3V[2]} \| sed -e "s/ *//" )
758	echo "Land carbon flux (NEP) :" ${CO2SRF}
759	echo "LU flux (FLUC) :" ${CO2LU}
760	echo "Total Land carbon flux (NBP) :" ${CO2SBG}
761
762	# Previous CO2
763	CO2_ppm_prec=$( echo "${PreviousLinelog[*]}" \| gawk -F '\|' '{gsub(" ",""); print $4}' )
764	echo "Previous CO2 :" ${CO2_ppm_prec}
765
766	# Formula
767	CO2_ppm=$( echo "${CO2_ppm_prec} + (${fCO2_ff} + ${CO2MBG} + ${CO2SBG}) / 2.12" \| bc -l )
768	echo "New CO2 :" ${CO2_ppm}
769
770	# Save CO2 values in ExeCpuLog variable contents 5 fields
771	echo "${CumulPeriod} ${PeriodDateBegin} ${PeriodDateEnd} ${CO2_ppm} ${CO2_ppm_prec} ${fCO2_ff} ${CO2MBG} ${CO2SBG} ${CO2LU}" \| \
772	gawk '{printf(" %11d \| %15s \| %15s \| %22.15g \| %20.15g \| %11.8g \| %11.8g \| %12.8g \| %12.8g \n", \
773	$1,$2,$3,$4,$5,$6,$7,$8,$9)}' >> ${SUBMIT_DIR}/co2.log
774
775	IGCM_debug_PopStack "ATM_Carbon_Finalize"
776	}

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