[5036] | 1 | #!/bin/bash |
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[4268] | 2 | #set -vx |
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| 3 | # Default options |
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| 4 | # |
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| 5 | # |
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| 6 | # |
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[4409] | 7 | date |
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[4268] | 8 | #### 1 Set up the compiling options |
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| 9 | #### Define some directories |
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| 10 | submitdir=$( pwd ) |
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| 11 | modipsl=$submitdir/../.. |
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[4275] | 12 | arch_path=$submitdir/ARCH |
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[4268] | 13 | |
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[4278] | 14 | #### Set default options |
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[4268] | 15 | # Optimization mode |
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| 16 | # optmode=prod/dev/debug |
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| 17 | optmode=prod |
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[4411] | 18 | # Resolution of LMDZ in regular mode |
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[4469] | 19 | resol_atm=144x142x79 |
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[4643] | 20 | # Also compile ce0l subprogram to LMDZ (y/n) |
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| 21 | ce0l=y |
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[4411] | 22 | |
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[4268] | 23 | # fcm_arch |
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| 24 | fcm_arch=default |
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| 25 | # Default values to be overritten |
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[4339] | 26 | parallel=mpi_omp |
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[4268] | 27 | export fcm_arch parallel xios |
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| 28 | full_flag="" |
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[4643] | 29 | full_xios="" |
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| 30 | full_lmdz="" |
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| 31 | full_orch="" |
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| 32 | |
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[4391] | 33 | # Default netcdf_lib is used for XIOS but can be change by argument |
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| 34 | netcdf_lib="" |
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[4268] | 35 | |
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[4408] | 36 | # Output text file for compilation of each component |
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[4622] | 37 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
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| 38 | outfile=$submitdir/out_compile_lmdzor.$datestr |
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| 39 | echo > $outfile |
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[4643] | 40 | echo; echo "Text output from compilation will be stored in file out_compile_lmdzor.$datestr"; echo |
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[4408] | 41 | |
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[4278] | 42 | #### Read arguments |
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[4268] | 43 | # Loop over all arguments to modify default set up |
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| 44 | while (($# > 0)) ; do |
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[4278] | 45 | case $1 in |
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[4643] | 46 | "-h") cat <<end_help |
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[4268] | 47 | ######################################################################## |
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[4411] | 48 | # Usage of the script compile_lmdzor.sh |
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[4268] | 49 | # |
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| 50 | ######################################################################## |
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| 51 | |
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| 52 | ./compile_config [Options] |
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| 53 | |
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[4469] | 54 | Options: -full, -resol_atm, -debug, -dev, -prod(default) |
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[4268] | 55 | |
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[4411] | 56 | Example 1: Default compilation of LMDZ-ORCHIDEE with XIOS and IOIPSL |
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| 57 | ./compile_lmdzor.sh |
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[4268] | 58 | |
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[4407] | 59 | Example 2: Compile in debug mode |
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[4411] | 60 | ./compile_lmdzor.sh -debug |
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[4407] | 61 | |
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| 62 | Example 3: Default compilation with full recompilation of all components |
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[4411] | 63 | ./compile_lmdzor.sh -full |
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[4268] | 64 | |
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[4411] | 65 | Example 4: Compilation of LMDZ in regular lat-lon for other dimensions (default: 144x142x79) |
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| 66 | The dimension can be changed to any other 3d dimension. |
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[4469] | 67 | ./compile_lmdzor.sh -resol_atm 96x95x79 |
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[4268] | 68 | |
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[4643] | 69 | end_help |
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| 70 | exit;; |
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| 71 | "-parallel") parallel=$2 ; shift ; shift ;; |
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| 72 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
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| 73 | "-xios") xios="$2" ; shift ; shift ;; |
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| 74 | "-debug") optmode=debug ; shift ;; |
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| 75 | "-dev") optmode=dev ; shift ;; |
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| 76 | "-prod") optmode=prod ; shift ;; |
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| 77 | "-resol_atm") resol_atm=$2 ; shift ; shift ;; |
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| 78 | "CE0L") ce0l=y ; shift ;; |
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| 79 | "-full") full_flag="-full"; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; shift ;; |
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| 80 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
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| 81 | "-full_lmdz") full_lmdz="-full" ; shift ;; |
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| 82 | "-full_orch") full_orch="-full" ; shift ;; |
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| 83 | "-netcdf_lib_seq") netcdf_lib="--netcdf_lib netcdf4_seq"; shift ;; |
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[4644] | 84 | *) echo "unknown option "$1" , exiting..." ; exit |
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[4278] | 85 | esac |
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| 86 | done |
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[4268] | 87 | |
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[4643] | 88 | echo "Following options are set in current compiling:" >> $outfile |
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| 89 | echo " resol_atm=${resol_atm}" >> $outfile |
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| 90 | echo " ce0l=${ce0l}" >> $outfile |
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| 91 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
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| 92 | echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch" >> $outfile |
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[4408] | 93 | echo >> $outfile |
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[4268] | 94 | |
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[4278] | 95 | ### Read host dependent default values |
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| 96 | ### These variables will not be changed if they were set as argument |
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[4268] | 97 | ###./host.sh $host |
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| 98 | # Later : Following lines should be set in host.sh file |
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| 99 | # begin host.sh |
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| 100 | if [ $fcm_arch == default ] ; then |
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[4278] | 101 | # Find out current host and source specific paths and commands for the host |
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| 102 | case $( hostname -s ) in |
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[4744] | 103 | jean-zay*) |
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| 104 | fcm_arch=X64_JEANZAY;; |
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[5030] | 105 | irene170|irene171|irene190|irene191|irene192|irene193) |
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| 106 | fcm_arch=X64_IRENE;; |
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| 107 | irene172|irene173|irene194|irene195) |
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| 108 | fcm_arch=X64_IRENE-AMD;; |
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[4278] | 109 | asterix*|obelix*) |
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[4973] | 110 | fcm_arch=ifort_LSCE |
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| 111 | if [ "${parallel}" == "mpi_omp" ] ; then |
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| 112 | echo "Warning!! Currently at Obelix hybrid mode is not possible." |
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| 113 | echo " Option -parallel mpi_omp is now changed to -parallel mpi" |
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| 114 | echo "" |
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| 115 | parallel=mpi |
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| 116 | else |
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| 117 | echo "You used -parallel" $parallel |
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| 118 | fi ;; |
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| 119 | ciclad*|climserv*|loholt*|camelot*) |
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[4391] | 120 | fcm_arch=ifort_CICLAD;; |
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[4278] | 121 | *) |
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[4391] | 122 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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[4278] | 123 | echo Exit now. |
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| 124 | exit |
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| 125 | esac |
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[4268] | 126 | fi |
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| 127 | |
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[4452] | 128 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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[4391] | 129 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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| 130 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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[4408] | 131 | echo >> $outfile |
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[4932] | 132 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
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[4470] | 133 | echo "Note that this new environement might be kept after compilation." |
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| 134 | echo "If this is the case, source again your personal environment after compilation. " |
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| 135 | echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile |
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| 136 | module list >> $outfile 2>&1 |
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| 137 | |
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| 138 | # Make a link to this file, to be used also in config.card |
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[4391] | 139 | rm -f ARCH/arch.env |
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| 140 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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[4470] | 141 | |
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| 142 | # Source the file |
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| 143 | source ARCH/arch.env >> $outfile 2>&1 |
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| 144 | echo >> $outfile |
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| 145 | echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile |
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| 146 | module list >> $outfile 2>&1 |
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[4391] | 147 | fi |
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| 148 | |
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[4268] | 149 | #### 2 Do the compilation |
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| 150 | ## 2.1 Compile ioipsl |
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| 151 | cd $modipsl/modeles/IOIPSL |
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[4278] | 152 | echo; echo "NOW COMPILE IOIPSL" |
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[4408] | 153 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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| 154 | |
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[4411] | 155 | # Check if compilation with fcm is included in IOIPSL |
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| 156 | if [ ! -f makeioipsl_fcm ] ; then |
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| 157 | echo "The file makeiopsl_fcm do not exist. Probably this is not the right version of IOIPSL." |
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| 158 | echo "Version of IOIPSL with fcm compilation is needed to compile with this script. Stop now." |
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| 159 | exit |
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| 160 | fi |
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| 161 | |
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[4940] | 162 | echo ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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| 163 | ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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[4268] | 164 | # Test if compiling succeded |
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| 165 | if [[ $? != 0 ]] ; then |
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[4278] | 166 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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| 167 | exit |
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[4268] | 168 | fi |
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| 169 | |
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| 170 | ## 2.2 Compile xios |
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| 171 | cd $modipsl/modeles/XIOS |
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[4278] | 172 | echo; echo "NOW COMPILE XIOS" |
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[4408] | 173 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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[4643] | 174 | echo ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
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| 175 | ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
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[4268] | 176 | # Test if compiling succeded |
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| 177 | if [[ $? != 0 ]] ; then |
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[4278] | 178 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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| 179 | exit |
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[4268] | 180 | fi |
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[4391] | 181 | # Move executables to modipsl/bin |
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[4457] | 182 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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| 183 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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[4391] | 184 | else |
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| 185 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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| 186 | exit |
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| 187 | fi |
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[4268] | 188 | |
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[4391] | 189 | |
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[4268] | 190 | ## 2.3 Compile orchidee |
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| 191 | cd $modipsl/modeles/ORCHIDEE |
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[4278] | 192 | echo; echo "NOW COMPILE ORCHIDEE" |
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[4408] | 193 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile |
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| 194 | |
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[4973] | 195 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
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| 196 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
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| 197 | # to ask question and wait for interactivly answer from the user. |
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| 198 | if [ -f build/fcm.bld.lock ] ; then |
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| 199 | echo >> $outfile |
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| 200 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
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| 201 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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| 202 | echo " The file will now be removed. " >> $outfile |
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| 203 | echo >> $outfile |
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| 204 | rm -f build/fcm.bld.lock |
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| 205 | fi |
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| 206 | |
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[4643] | 207 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver >> $outfile |
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| 208 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver >> $outfile 2>&1 |
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[4268] | 209 | # Test if compiling finished |
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| 210 | if [[ $? != 0 ]] ; then |
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| 211 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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| 212 | exit |
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| 213 | fi |
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| 214 | |
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[4643] | 215 | # Rename executables to contain $optmode |
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| 216 | if [ -f $modipsl/bin/orchidee_ol ] ; then mv $modipsl/bin/orchidee_ol $modipsl/bin/orchidee_ol_${optmode} ; fi |
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| 217 | if [ -f $modipsl/bin/orchideedriver ] ; then mv $modipsl/bin/orchideedriver $modipsl/bin/orchideedriver_${optmode} ; fi |
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[4408] | 218 | |
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[4643] | 219 | |
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[4411] | 220 | ## 2.4 Compile LMDZ for regular latlon configuration |
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[4469] | 221 | cd $modipsl/modeles/LMDZ |
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[4932] | 222 | # Compile LMDZ regular lat-lon executable |
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[4469] | 223 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" |
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| 224 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile |
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[4268] | 225 | |
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[4622] | 226 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
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| 227 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
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| 228 | # to ask question and wait for interactivly answer from the user. |
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| 229 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
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| 230 | echo >> $outfile |
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| 231 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
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| 232 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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| 233 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
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| 234 | echo >> $outfile |
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| 235 | rm -f libf/grid/dimensions.h |
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| 236 | rm -f .lock |
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| 237 | fi |
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| 238 | |
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[4643] | 239 | echo ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile |
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| 240 | ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 |
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[4469] | 241 | # Test if compiling finished |
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| 242 | if [[ $? != 0 ]] ; then |
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| 243 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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| 244 | exit |
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| 245 | fi |
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[4408] | 246 | |
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[4643] | 247 | # Move executables to modipsl/bin folder |
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| 248 | echo >> $outfile |
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| 249 | echo "Move gcm.e executable to modipsl/bin" >> $outfile |
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| 250 | echo ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile |
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| 251 | ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile |
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| 252 | echo >> $outfile |
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[4278] | 253 | |
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[4469] | 254 | # Find executable suffix |
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| 255 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
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[4643] | 256 | suffix=_${resol_atm}_phylmd_seq_orch.e |
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[4469] | 257 | else |
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[4643] | 258 | suffix=_${resol_atm}_phylmd_para_mem_orch.e |
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[4469] | 259 | fi |
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[4643] | 260 | echo gcm suffix = $suffix |
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[4408] | 261 | |
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[4643] | 262 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then |
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| 263 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${optmode}.e |
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| 264 | else |
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| 265 | echo "ERROR gcm${suffix} executable does not exist." |
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| 266 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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| 267 | exit |
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| 268 | fi |
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[4278] | 269 | |
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[4268] | 270 | |
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[4643] | 271 | # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
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| 272 | if [ $ce0l == y ] ; then |
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| 273 | echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" |
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| 274 | echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile |
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| 275 | |
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[5122] | 276 | echo ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile |
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| 277 | ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 |
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[4643] | 278 | # Test if compiling finished |
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| 279 | if [[ $? != 0 ]] ; then |
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| 280 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
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| 281 | exit |
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| 282 | fi |
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| 283 | |
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| 284 | |
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| 285 | # Move executables to modipsl/bin folder |
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| 286 | echo >> $outfile |
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| 287 | echo "Move ce0l.e executable to modipsl/bin" >> $outfile |
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| 288 | echo ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile |
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| 289 | ls -lrt $modipsl/modeles/LMDZ/bin >> $outfile |
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| 290 | echo >> $outfile |
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[5122] | 291 | suffix=_${resol_atm}_phylmd_seq.e |
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[4643] | 292 | echo ce0l suffix = $suffix |
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| 293 | |
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| 294 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then |
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| 295 | mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e |
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| 296 | else |
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| 297 | echo "ERROR ce0l${suffix} executable does not exist." |
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| 298 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
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| 299 | exit |
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| 300 | fi |
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| 301 | fi |
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| 302 | |
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| 303 | |
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[4408] | 304 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
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[4643] | 305 | echo ls -lrt modipsl/bin >> $outfile |
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| 306 | ls -lrt $modipsl/bin >> $outfile |
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[4278] | 307 | |
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[4643] | 308 | echo; echo "ALL COMPILING FINISHED" ; echo |
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| 309 | echo "Executables are found in modipsl/bin" |
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| 310 | echo "Check that executable names correspond with the name set in config.card before launching the job" |
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| 311 | echo ls -lrt modipsl/bin |
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| 312 | ls -lrt $modipsl/bin |
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| 313 | |
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[4409] | 314 | date |
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[4643] | 315 | |
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[4268] | 316 | exit |
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