source: CONFIG/UNIFORM/v6/NEMO_v6.5/GENERAL/PARAM/NAMELIST/namelist_pisces_cfg

Last change on this file was 6601, checked in by cetlod, 9 months ago

NEMOv6.5 : Update config to switch to NEMOv4.2.1 and PISCES gas
File size: 12.9 KB
Line 
1!-----------------------------------------------------------------------
2&nampismod     !  Model used
3!-----------------------------------------------------------------------
4  ln_p4z    = .true.         !  PISCES model used
5  ln_dms    = _AUTO_: DEFAULT=.FALSE.   !  DMS emission module
6  ln_n2o    = _AUTO_: DEFAULT=.FALSE.   !  N2O cycling module
7  ln_bvocs  = _AUTO_: DEFAULT=.FALSE.   !  biogenic emission module (CO, COS, Isoprene)
8/
9!-----------------------------------------------------------------------
10&nampisext     !   air-sea exchange
11!-----------------------------------------------------------------------
12   atcco2     = _AUTO_: DEFAULT=278.    ! Constant value atmospheric pCO2 - ln_co2int = F
13   clname     =  'atmco2.txt'  ! Name of atm pCO2 file - ln_co2int = T
14   nn_offset  =  0       ! Offset model-data start year - ln_co2int = T
15!                        ! If your model year is iyy, nn_offset=(years(1)-iyy)
16!                        ! then the first atmospheric CO2 record read is at years(1)
17/
18!-----------------------------------------------------------------------
19&nampisatm     !  Atmospheric prrssure
20!-----------------------------------------------------------------------
21/
22!-----------------------------------------------------------------------
23&nampisbio     !   biological parameters
24!-----------------------------------------------------------------------
25   nrdttrc    =  _AUTO_: DEFAULT=1
26/
27!-----------------------------------------------------------------------
28&namgasdms     !   DMS
29!-----------------------------------------------------------------------
30   xkdms      = 1.25E-9   !  DMS half saturation for bacterial loss = 1.25E-9
31   xscdiat    = 0.0018    ! S/C ratio for diatoms = 0.0018
32   xscnanom   = 0.015     ! min S/C ratio for nano = 0.015
33   xscnanov   = 0.015     ! var S/C ratio for nano = 0.015
34   xysvar     = 0.5       ! DMSP-to-DMS yield var = 0.2
35   xysmin     = 0.1       ! DMSP-to-DMS yield min = 0.4
36   xknfer     = 1.e-11    ! DMS FER  half saturation for nano = 2.e-11
37   xkdfer     =  0.5e-10  ! DMS FER  half saturation for diatoms = 1.e-10
38   xkdocdms   = 5.e-6     ! DMS DOC  half saturation = 5.e-6
39   xknpo4     = 2.e-7     ! DMS PO4  half saturation for nano = 1.e-7
40   xkdpo4     = 10.e-7    ! DMS PO4  half saturation for diatoms = 5.e-7
41   xlightdms  = 0.05      ! photodegradation rate constant of DMS
42   xsinkdms   = 0.4       ! microbial degradation rate of DMS
43   xvsinkdms  = 1.        ! microbial degradation rate of DMS VOGT
44   ln_phdms = .true.      ! pH dependancy to DMS production (Six et al. 2013)
45/
46!-----------------------------------------------------------------------
47&namgasn2o     !   N2O
48!-----------------------------------------------------------------------
49   atcn2o     = _AUTO_: DEFAULT=280.      ! Constant value atmospheric pN2O (ppb)
50   alphan2o   = 1.5e-4    ! Nitrification coefficient for n2o
51   betan2o    = 120.e-4   ! Denitrification coefficient for n2o
52   xlow       =  1.0      ! Lower boundary of suboxia for N2O production
53   xhigh      = 5.0       ! Upper boundary of suboxia for N2O production
54   sinkn2o    = 4.1e-4    ! N2O sink term coefficient (d-1)
55                          ! Martinez-Rey 2015 : 0.138 yr-1 ===> 3.7e-4 d-1
56                          ! Berthet 2022      : 7.12e-4 d-1
57/
58!-----------------------------------------------------------------------
59&namgasbvocs     !   BVOCs
60!-----------------------------------------------------------------------
61   atccos      = _AUTO_: DEFAULT=450.  ! Constant value atmospheric pCOS (ppt)
62   atcco       = 90.e-12    ! units atm (90 ppbv) Fraction molaire du pCO
63   atcisp      = 0.        ! units atm (0 ppt/ 0.4 ppt ) Fraction molaire pIsoprene
64   uvlux       = 0.044     ! proportion of UV radiant flux to global solar radiation
65   xnanoco    =  85.5       ! Production of CO via nanophyto (µmol.gChla-1.d-1)
66   xdiaco     =  33.0       ! Production of CO via diatoms   (µmol.gChla-1.d-1) - From Gros et al. 2009
67   Isp_flum   =  0.0        ! 0 if isoprene production NOT depend on light / 1 if depend on light
68   ImIsp      =  30.0        ! W.m-2 / in case of Isp_flum = 1 - mean light (etot_ndcy)
69   atempIsp   =  0.05       ! Temperature dependance for Isp production
70   temoyIsp   =  16.5       ! Mean Temperature for Isoprene production with temperature dependance
71   muIsp_n    =  0.45       ! mu rate for Nano (µmol.gChla.h-1) - Ludivine C. version
72   muIsp_d    =  0.25       ! mu rate for Diat (µmol.gChla.h-1) - Ludivine C. version
73   xprodco    =  9.577e-11  ! Rate constant of CO photoproduction (mol.W-1.s-1)
74   xsinkco    =  0.2        ! Rate constant for CO microbial sink (d-1)
75   ln_bactconsco = .false.   ! Bacterial Conso. of CO not depend (0-use xsinkco) or depend on Temperature and Chla (1)
76   ln_darkprodco = .true.   ! Representation of the Dark production of CO :  Yes=1 or No=0
77   xsinkisp   =  0.01       ! Rate constant for isoprene sink (d-1)
78/
79!-----------------------------------------------------------------------
80&namp4zlim     !   parameters for nutrient limitations for PISCES std  - ln_p4z
81!-----------------------------------------------------------------------
82/
83!-----------------------------------------------------------------------
84&namp5zlim     !   parameters for nutrient limitations PISCES QUOTA    - ln_p5z
85!-----------------------------------------------------------------------
86/
87!-----------------------------------------------------------------------
88&namp5zquota   !   parameters for nutrient limitations PISCES quota    - ln_p5z
89!-----------------------------------------------------------------------
90/
91!-----------------------------------------------------------------------
92&nampisopt     !   parameters for optics
93!-----------------------------------------------------------------------
94!              !  file name     ! frequency (hours) ! variable  ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation ! land/sea mask !
95!              !                !  (if <0  months)  !   name    !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  ! filename      !
96   sn_par      = 'par_fraction.orca' ,     24            , 'fr_par'  ,  .true.      , .true. , 'yearly'  , ''       , ''       , ''
97   cn_dir      = './'      !  root directory for the location of the dynamical files
98   ln_varpar   =  .true.   ! boolean for PAR variable
99   parlux      =  0.43      ! Fraction of shortwave as PAR
100/
101!-----------------------------------------------------------------------
102&namp4zprod    !   parameters for phytoplankton growth for PISCES std  - ln_p4z
103!-----------------------------------------------------------------------
104/
105!-----------------------------------------------------------------------
106&namp5zprod    !   parameters for phytoplankton growth for PISCES quota- ln_p5z
107!-----------------------------------------------------------------------
108/
109!-----------------------------------------------------------------------
110&namp4zmort    !   parameters for phytoplankton sinks for PISCES std   - ln_p4z
111!-----------------------------------------------------------------------
112/
113!-----------------------------------------------------------------------
114&namp5zmort    !   parameters for phytoplankton sinks for PISCES quota - ln_p5z
115!-----------------------------------------------------------------------
116/
117!-----------------------------------------------------------------------
118&namp4zmes     !   parameters for mesozooplankton for PISCES std       - ln_p4z
119!-----------------------------------------------------------------------
120/
121!-----------------------------------------------------------------------
122&namp5zmes     !   parameters for mesozooplankton
123!-----------------------------------------------------------------------
124/
125!-----------------------------------------------------------------------
126&namp4zzoo     !   parameters for microzooplankton for PISCES std      - ln_p4z
127!-----------------------------------------------------------------------
128/
129!-----------------------------------------------------------------------
130&namp5zzoo     !   parameters for microzooplankton
131!-----------------------------------------------------------------------
132/
133!-----------------------------------------------------------------------
134&nampisfer     !   parameters for iron chemistry
135!-----------------------------------------------------------------------
136/
137!----------------------------------------------------------------------- 
138&nampisrem     !   parameters for remineralization
139!-----------------------------------------------------------------------
140/
141!-----------------------------------------------------------------------
142&nampispoc     !   parameters for organic particles
143!-----------------------------------------------------------------------
144/
145!-----------------------------------------------------------------------
146&nampiscal     !   parameters for Calcite chemistry
147!-----------------------------------------------------------------------
148   kdca       =  20.     ! calcite dissolution rate constant (1/time)
149   nca        =  4.7      ! order of dissolution reaction (dimensionless)
150/
151!-----------------------------------------------------------------------
152&nampisbc     !   parameters for inputs deposition
153!-----------------------------------------------------------------------
154!              !  file name        ! frequency (hours) ! variable      ! time interp. !  clim  ! 'yearly'/ ! weights  ! rotation ! land/sea mask !
155!              !                   !  (if <0  months)  !   name        !   (logical)  !  (T/F) ! 'monthly' ! filename ! pairing  ! filename      !
156!-----------------------------------------------------------------------
157   sn_dust     = 'dustdep'         ,       -1          , 'dust'        ,  .true.      , .true. , 'yearly'  , 'weights_2D_r360x180_bilin.nc'       , ''    , ''
158   sn_ironsed  = 'pmarge.orca'     ,    -12            , 'bathy'       ,  .false.     , .true. , 'yearly'  , ''       , ''    , ''
159   sn_hydrofe  = 'hydrofe.orca'    ,    -12            , 'epsdb'       ,  .false.     , .true. , 'yearly'  , ''       , ''    , ''
160!
161   cn_dir      = './'      !  root directory for the location of the dynamical files
162   ln_ironsed  =  .true.   ! boolean for Fe input from sediments
163   ln_ironice  =  .true.   ! boolean for Fe input from sea ice
164   ln_hydrofe  =  .false.   ! boolean for from hydrothermal vents
165   sedfeinput  =  2.e-9    ! Coastal release of Iron
166   distcoast   =  5.e3     ! Distance off the coast for Iron from sediments
167   mfrac       =  0.035    ! Fe mineral fraction of dust
168   wdust       =  2.0      ! Dust sinking speed
169   icefeinput  =  15.e-9   ! Iron concentration in sea ice
170   hratio      =  1.e+7    ! Fe to 3He ratio assumed for vent iron supply
171/
172!-----------------------------------------------------------------------
173&nampislig     !   Namelist parameters for ligands, nampislig
174!-----------------------------------------------------------------------
175/
176!-----------------------------------------------------------------------
177&nampisice     !   Prescribed sea ice tracers
178!-----------------------------------------------------------------------
179/
180!-----------------------------------------------------------------------
181&nampisdmp     !   Damping
182!-----------------------------------------------------------------------
183  nn_pisdmp   =  _AUTO_
184/
185!-----------------------------------------------------------------------
186&nampismass    !   Mass conservation
187!-----------------------------------------------------------------------
188/
189!-----------------------------------------------------------------------
190&namlobphy     !   biological parameters for phytoplankton
191!-----------------------------------------------------------------------
192/
193!-----------------------------------------------------------------------
194&namlobnut     !   biological parameters for nutrients
195!-----------------------------------------------------------------------
196/
197!-----------------------------------------------------------------------
198&namlobzoo     !   biological parameters for zooplankton
199!-----------------------------------------------------------------------
200/
201!-----------------------------------------------------------------------
202&namlobdet     !   biological parameters for detritus
203!-----------------------------------------------------------------------
204/
205!-----------------------------------------------------------------------
206&namlobdom     !   biological parameters for DOM
207!-----------------------------------------------------------------------
208/
209!-----------------------------------------------------------------------
210&namlobsed     !   parameters from aphotic layers to sediment
211!-----------------------------------------------------------------------
212/
213!-----------------------------------------------------------------------
214&namlobrat     !   general coefficients
215!-----------------------------------------------------------------------
216/
217!-----------------------------------------------------------------------
218&namlobopt     !   optical parameters
219!-----------------------------------------------------------------------
220/
Note: See TracBrowser for help on using the repository browser.