1 | #!/bin/bash |
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2 | #set -vx |
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3 | # Default options |
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4 | # |
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5 | # |
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6 | # |
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7 | date |
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8 | #### 1 Set up the compiling options |
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9 | #### Define some directories |
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10 | submitdir=$( pwd ) |
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11 | modipsl=$submitdir/../.. |
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12 | arch_path=$submitdir/ARCH |
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13 | export ROOT=$modipsl/modeles/DYNAMICO |
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14 | |
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15 | #### Set default options |
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16 | # Optimization mode |
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17 | # optmode=prod/dev/debug |
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18 | optmode=prod |
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19 | # Resolution if compiling LMDZ in regular mode without DYNAMICO |
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20 | # Use for example following "./compile_icolmdzorinca.sh -regular_latlon 144x142x79" |
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21 | regular_latlon=no |
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22 | # fcm_arch |
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23 | fcm_arch=default |
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24 | # Default values to be overritten |
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25 | parallel=mpi_omp |
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26 | export fcm_arch parallel xios |
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27 | full_flag="" |
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28 | full_xios="" |
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29 | full_lmdz="" |
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30 | full_orch="" |
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31 | full_dyna="" |
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32 | optchimie=GES |
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33 | |
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34 | # Default netcdf_lib is used for XIOS but can be change by argument |
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35 | netcdf_lib="" |
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36 | |
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37 | # Output text file for compilation of each component |
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38 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
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39 | outfile=$submitdir/out_compile_icolmdzorinca.$datestr |
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40 | echo > $outfile |
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41 | echo; echo "Text output from compilation will be stored in file out_compile_icolmdzor.$datestr"; echo |
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42 | |
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43 | #### Read arguments |
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44 | # Loop over all arguments to modify default set up |
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45 | while (($# > 0)) ; do |
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46 | case $1 in |
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47 | "-h") cat <<end_help |
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48 | |
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49 | ######################################################################## |
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50 | # Usage of the script compile_icolmdzorinca.sh |
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51 | # |
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52 | ######################################################################## |
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53 | |
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54 | ./compile_config [Options] |
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55 | |
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56 | Options: -full, -regular_latlon, -debug, -dev, -prod(default) |
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57 | |
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58 | Example 1: Default compilation of DYNAMICO-LMDZ-ORCHIDEE with XIOS and IOIPSL |
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59 | ./compile_icolmdzorinca.sh |
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60 | |
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61 | Example 2: Compile in debug mode |
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62 | ./compile_icolmdzorinca.sh -debug |
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63 | |
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64 | Example 3: Default compilation with full recompilation of all components |
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65 | ./compile_icolmdzorinca.sh -full |
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66 | |
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67 | Example 4: Compilation of LMDZ in regular lat-lon for dimension 144x142x79. |
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68 | The dimension can be changed to any other 3d dimension. DYNAMICO is also compiled as default. |
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69 | ./compile_icolmdzorinca.sh -regular_latlon 144x142x79 |
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70 | |
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71 | Example 5: Compilation with a chosen chemistry, for example DUSS (default: NMHC_AER_S) |
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72 | ./compile_icolmdzorinca.sh -chimie DUSS |
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73 | |
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74 | |
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75 | end_help |
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76 | exit;; |
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77 | |
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78 | "-parallel") parallel=$2 ; shift ; shift ;; |
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79 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
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80 | "-xios") xios="$2" ; shift ; shift ;; |
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81 | "-debug") optmode=debug ; shift ;; |
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82 | "-dev") optmode=dev ; shift ;; |
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83 | "-prod") optmode=prod ; shift ;; |
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84 | "-regular_latlon") regular_latlon=yes ; resol_atm=$2 ; shift ; shift ;; |
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85 | "-full") full_flag="-full"; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_dyna="-full" ; shift ;; |
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86 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
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87 | "-full_lmdz") full_lmdz="-full" ; shift ;; |
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88 | "-full_orch") full_orch="-full" ; shift ;; |
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89 | "-full_dyna") full_dyna="-full" ; shift ;; |
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90 | "-netcdf_lib_seq") netcdf_lib="--netcdf_lib netcdf4_seq"; shift ;; |
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91 | "-chimie") optchimie=$2; shift ; shift;; |
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92 | |
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93 | *) echo "unknown option "$1" , exiting..." ; exit |
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94 | esac |
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95 | done |
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96 | |
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97 | echo "Following options are set in current compiling:" >> $outfile |
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98 | echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile |
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99 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
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100 | echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_dyna=$full_dyna" >> $outfile |
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101 | echo >> $outfile |
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102 | |
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103 | ### Read host dependent default values |
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104 | ### These variables will not be changed if they were set as argument |
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105 | ###./host.sh $host |
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106 | # Later : Following lines should be set in host.sh file |
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107 | # begin host.sh |
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108 | if [ $fcm_arch == default ] ; then |
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109 | # Find out current host and source specific paths and commands for the host |
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110 | case $( hostname -s ) in |
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111 | jean-zay*) |
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112 | fcm_arch=X64_JEANZAY;; |
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113 | irene170|irene171|irene190|irene191|irene192|irene193) |
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114 | fcm_arch=X64_IRENE;; |
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115 | irene172|irene173|irene194|irene195) |
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116 | fcm_arch=X64_IRENE-AMD;; |
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117 | asterix*|obelix*) |
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118 | fcm_arch=ifort_LSCE |
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119 | if [ "${parallel}" == "mpi_omp" ] ; then |
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120 | echo "Warning!! Currently at Obelix hybrid mode is not possible." |
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121 | echo " Option -parallel mpi_omp is now changed to -parallel mpi" |
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122 | echo "" |
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123 | parallel=mpi |
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124 | else |
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125 | echo "You used -parallel" $parallel |
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126 | fi ;; |
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127 | ciclad*|climserv*|loholt*|camelot*) |
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128 | fcm_arch=ifort_CICLAD;; |
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129 | *) |
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130 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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131 | echo Exit now. |
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132 | exit |
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133 | esac |
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134 | fi |
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135 | |
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136 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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137 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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138 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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139 | echo >> $outfile |
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140 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
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141 | echo "Note that this new environement might be kept after compilation." |
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142 | echo "If this is the case, source again your personal environment after compilation." |
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143 | echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile |
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144 | module list >> $outfile 2>&1 |
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145 | |
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146 | # Make a link to this file, to be used also in config.card |
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147 | rm -f ARCH/arch.env |
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148 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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149 | |
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150 | # Source the file |
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151 | source ARCH/arch.env >> $outfile 2>&1 |
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152 | |
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153 | echo >> $outfile |
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154 | echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile |
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155 | module list >> $outfile 2>&1 |
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156 | fi |
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157 | |
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158 | #### 2 Do the compilation |
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159 | ## 2.1 Compile ioipsl |
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160 | cd $modipsl/modeles/IOIPSL |
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161 | echo; echo "NOW COMPILE IOIPSL" |
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162 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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163 | |
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164 | echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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165 | ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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166 | # Test if compiling succeded |
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167 | if [[ $? != 0 ]] ; then |
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168 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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169 | echo "ALL INFORMATION IN FILE $outfile" |
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170 | exit |
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171 | fi |
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172 | |
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173 | ## 2.2 Compile xios |
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174 | cd $modipsl/modeles/XIOS |
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175 | echo; echo "NOW COMPILE XIOS" |
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176 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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177 | echo ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
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178 | ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
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179 | # Test if compiling succeded |
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180 | if [[ $? != 0 ]] ; then |
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181 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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182 | echo "ALL INFORMATION IN FILE $outfile" |
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183 | exit |
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184 | fi |
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185 | # Move executables to modipsl/bin |
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186 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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187 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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188 | else |
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189 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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190 | echo "ALL INFORMATION IN FILE $outfile" |
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191 | exit |
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192 | fi |
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193 | |
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194 | |
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195 | ## 2.3 Compile orchidee |
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196 | cd $modipsl/modeles/ORCHIDEE |
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197 | echo; echo "NOW COMPILE ORCHIDEE" |
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198 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile |
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199 | |
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200 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
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201 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
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202 | # to ask question and wait for interactivly answer from the user. |
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203 | if [ -f build/fcm.bld.lock ] ; then |
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204 | echo >> $outfile |
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205 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
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206 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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207 | echo " The file will now be removed. " >> $outfile |
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208 | echo >> $outfile |
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209 | rm -f build/fcm.bld.lock |
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210 | fi |
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211 | |
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212 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile |
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213 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1 |
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214 | # Test if compiling finished |
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215 | if [[ $? != 0 ]] ; then |
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216 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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217 | echo "ALL INFORMATION IN FILE $outfile" |
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218 | exit |
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219 | fi |
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220 | |
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221 | # If orchide driver executables have been compiled (option -driver), then rename executables to contain $optmode |
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222 | if [ -f $modipsl/bin/orchidee_ol ] ; then mv $modipsl/bin/orchidee_ol $modipsl/bin/orchidee_ol_${optmode} ; fi |
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223 | if [ -f $modipsl/bin/orchideedriver ] ; then mv $modipsl/bin/orchideedriver $modipsl/bin/orchideedriver_${optmode} ; fi |
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224 | |
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225 | |
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226 | ## ajout compile inca Anne |
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227 | cd $modipsl/modeles/INCA |
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228 | |
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229 | echo; echo "NOW COMPILE INCA ${optchimie}" |
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230 | echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile |
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231 | ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_flag >> $outfile 2>&1 |
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232 | |
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233 | # Test if compiling finished |
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234 | if [[ $? != 0 ]] ; then |
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235 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
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236 | echo "ALL INFORMATION IN FILE $outfile" |
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237 | exit |
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238 | fi |
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239 | |
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240 | |
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241 | |
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242 | echo "Move inca.dat modipsl/bin" |
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243 | if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then |
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244 | mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optmode}_${optchimie}.dat ; |
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245 | else |
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246 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
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247 | echo "ALL INFORMATION IN FILE $outfile" |
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248 | exit |
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249 | fi |
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250 | |
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251 | echo "Move tracer.def to modipsl/bin" |
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252 | if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then |
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253 | mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optmode}_${optchimie}.def ; |
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254 | fi |
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255 | |
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256 | |
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257 | ## 2.4 Compile lmdz |
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258 | cd $modipsl/modeles/LMDZ |
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259 | # Compile LMDZ as library to couple to DYNAMICO |
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260 | echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" |
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261 | echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile |
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262 | |
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263 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
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264 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
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265 | # to ask question and wait for interactivly answer from the user. |
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266 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
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267 | echo >> $outfile |
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268 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
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269 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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270 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
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271 | echo >> $outfile |
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272 | rm -f libf/grid/dimensions.h |
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273 | rm -f .lock |
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274 | fi |
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275 | |
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276 | echo ./makelmdz_fcm -p lmd -rrtm true -cosp true -$optmode -mem -parallel $parallel -libphy -v orchidee2.1 -chimie INCA -io xios -arch $fcm_arch -j 8 $full_lmdz >> $outfile |
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277 | ./makelmdz_fcm -p lmd -rrtm true -cosp true -$optmode -mem -parallel $parallel -libphy -v orchidee2.1 -chimie INCA -io xios -arch $fcm_arch -j 8 $full_lmdz >> $outfile 2>&1 |
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278 | # Test if compiling finished |
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279 | if [[ $? != 0 ]] ; then |
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280 | echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP" |
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281 | echo "ALL INFORMATION IN FILE $outfile" |
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282 | exit |
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283 | fi |
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284 | |
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285 | |
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286 | ## 2.5 Compile DYNAMICO |
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287 | cd $modipsl/modeles/DYNAMICO |
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288 | echo; echo "NOW COMPILE DYNAMICO " |
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289 | echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile |
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290 | |
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291 | echo ./make_icosa -$optmode -parallel $parallel -external_ioipsl -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile |
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292 | ./make_icosa -$optmode -parallel $parallel -external_ioipsl -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1 |
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293 | # Test if compiling finished |
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294 | if [[ $? != 0 ]] ; then |
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295 | echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP" |
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296 | echo "ALL INFORMATION IN FILE $outfile" |
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297 | exit |
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298 | fi |
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299 | |
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300 | ## 2.6 Compile interface ICOSA_LMDZ |
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301 | cd $modipsl/modeles/ICOSA_LMDZ |
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302 | echo; echo "NOW COMPILE ICOSA_LMDZ " |
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303 | echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile |
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304 | |
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305 | echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel -with_orchidee -with_inca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile |
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306 | ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel -with_orchidee -with_inca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1 |
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307 | # Test if compiling finished |
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308 | if [[ $? != 0 ]] ; then |
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309 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP" |
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310 | echo "ALL INFORMATION IN FILE $outfile" |
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311 | exit |
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312 | fi |
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313 | # Move executables to modipsl/bin |
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314 | if [ $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then |
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315 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${optmode}_${optchimie}.exe |
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316 | else |
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317 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP" |
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318 | echo "ALL INFORMATION IN FILE $outfile" |
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319 | exit |
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320 | fi |
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321 | |
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322 | |
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323 | |
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324 | ## 2.7 Compile LMDZ for regular latlon configuration |
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325 | if [ $regular_latlon = yes ] ; then |
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326 | |
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327 | cd $modipsl/modeles/LMDZ |
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328 | # Compile LMDZ regular lat-lon exectuable |
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329 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" |
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330 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile |
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331 | |
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332 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
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333 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
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334 | # to ask question and wait for interactivly answer from the user. |
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335 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
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336 | echo >> $outfile |
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337 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
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338 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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339 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
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340 | echo >> $outfile |
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341 | rm -f libf/grid/dimensions.h |
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342 | rm -f .lock |
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343 | fi |
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344 | echo ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -j 8 $full_lmdz gcm >> $outfile |
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345 | ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -j 8 $full_lmdz gcm >> $outfile 2>&1 |
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346 | # Test if compiling finished |
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347 | if [[ $? != 0 ]] ; then |
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348 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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349 | echo "ALL INFORMATION IN FILE $outfile" |
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350 | exit |
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351 | fi |
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352 | |
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353 | # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
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354 | echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" |
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355 | echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile |
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356 | |
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357 | echo ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -j 8 $full_lmdz ce0l >> $outfile |
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358 | ./makelmdz_fcm -d ${resol_atm} -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v orchidee2.1 -chimie INCA -arch $fcm_arch -j 8 $full_lmdz ce0l >> $outfile 2>&1 |
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359 | # Test if compiling finished |
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360 | if [[ $? != 0 ]] ; then |
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361 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
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362 | echo "ALL INFORMATION IN FILE $outfile" |
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363 | exit |
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364 | fi |
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365 | |
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366 | # Find executable suffix |
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367 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
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368 | suffix=_${resol_atm}_phylmd_seq_orch_inca.e |
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369 | else |
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370 | suffix=_${resol_atm}_phylmd_para_mem_orch_inca.e |
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371 | fi |
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372 | echo gcm suffix = $suffix |
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373 | |
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374 | # Move executables to modipsl/bin folder |
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375 | echo "Move gcm.e and ce0l executable to modipsl/bin" |
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376 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then |
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377 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${optmode}_${optchimie}.e |
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378 | else |
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379 | echo "ERROR gcm${suffix} executable does not exist." |
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380 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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381 | echo "ALL INFORMATION IN FILE $outfile" |
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382 | exit |
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383 | fi |
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384 | |
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385 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then |
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386 | mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}_${optchimie}.e |
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387 | else |
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388 | echo "ERROR ce0l${suffix} executable does not exist." |
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389 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
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390 | echo "ALL INFORMATION IN FILE $outfile" |
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391 | exit |
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392 | fi |
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393 | fi |
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394 | |
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395 | |
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396 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
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397 | echo ls -lrt modipsl/bin >> $outfile |
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398 | ls -lrt $modipsl/bin >> $outfile |
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399 | |
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400 | echo; echo "ALL COMPILING FINISHED" ; echo |
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401 | echo "Executables are found in modipsl/bin" |
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402 | echo "Check that executable names correspond with the name set in config.card before launching the job" |
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403 | echo ls -lrt modipsl/bin |
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404 | ls -lrt $modipsl/bin |
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405 | |
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406 | date |
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407 | exit |
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408 | |
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409 | |
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