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source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6649

Last change on this file since 6649 was 6649, checked in by aclsce, 8 months ago
Added cleaning of inca and dynmico in case of full option is activated.
Property svn:executable set to ``*
File size: 26.0 KB

Line
1	#!/bin/bash
2	# Default options
3	#
4	#
5	#
6	date
7	#### 1 Set up the compiling options
8	#### Define some directories
9	submitdir=$( pwd )
10	modipsl=$submitdir/../..
11	arch_path=$submitdir/ARCH
12	mysrc_path=$submitdir/SOURCES
13	export ROOT=$modipsl/modeles/DYNAMICO
14	#### Set default options
15	# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16	regular_latlon=no
17	# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=yes
18	resol_atm=144x142x79
19	# Coupled with ocean biogeochemistry (y/n)
20	nemotop=y
21	# Optimization mode
22	# optmode=prod/dev/debug
23	optmode=prod
24	# fcm_arch
25	fcm_arch=default
26	# Default values to be overritten
27	parallel=mpi_omp
28	export fcm_arch parallel xios
29	full_flag=""
30	full_nemo=n
31	full_inca=""
32	full_xios=""
33	full_lmdz=""
34	full_orch=""
35	full_dyna=""
36	full_oasis=n
37	# choose radiative code compilation option
38	rad=rrtm
39	opt_rad=""
40	#choose chemistry inca configuration
41	optchimie=GES
42
43	# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44	subconfig=default
45
46	# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables.
47	orchversion=orch22
48
49	# Default netcdf_lib is used for XIOS but can be change by argument
50	netcdf_lib=""
51
52	# Output text file for compilation of each component
53	datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
54	outfile=$submitdir/out_compile_ipslcm7.$datestr
55	echo > $outfile
56	echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
57
58
59	rm -f out_compile_ipslcm7
60	ln -s ${outfile} out_compile_ipslcm7
61
62
63	#### Read arguments
64	# Loop over all arguments to modify default set up
65	while (($# > 0)) ; do
66	case $1 in
67	"-h") cat <<end_help
68	########################################################################
69	# Usage of the script compile_ipslcm7.sh
70	#
71	########################################################################
72
73	./compile_ipslcm7.sh [Options]
74
75
76	Options: [-full] Full recompilation of all components. This option can be added to all other options.
77	[-cleannemo] Full recompilation of NEMO component only.
78	[-regular_latlon] Activate compilation of LMDZ for regular latlon grid with default resol_atm size in addition to the icosahedric grid.
79	[-resol_atm XXXxYYYxZZ] Define which regular grid to compile.
80	[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
81	[-subconfig X] Set this option if you want to compile a sub-configuration. X can be: ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA or LMDZOR.
82	If this option is not set, all extracted components are compiled.
83
84	Example 1: Default compilation of IPSLCM7 for resolution LR
85	(Resolution atmos: nbp40 )
86	./compile_ipslcm7.sh
87
88	Example 2: Default resolution (LR) compiled in debug mode
89	./compile_ipslcm7.sh -debug
90
91	Example 3: Default compilation with full recompilation of all components. No clean is needed.
92	./compile_ipslcm7.sh -full
93
94	Example 4: Compilation of LMDZ in regular lat-lon for default dimension 144x142x79.
95	./compile_ipslcm7.sh -regular_latlon
96	Activate regular lat-lon compilation and change resolution to 144x142x95
97	./compile_ipslcm7.sh -resol_atm 144x142x95
98
99	Example 5: Compiltion of ORCHIDEE_trunk version
100	Note that for compiling ORCHIDEE trunk you must first have extracted ORCHIDEE_trunk folder in modeles.
101	modeles/ORCHIDEE_2_2 folder can be kept at the same time.
102	./compile_ipslcm7.sh -orch4
103	./compile_ipslcm7.sh -regular_latlon 144x142x79 -orch4
104
105
106	Example 6: compilation of a specific chemistry for INCA (default is GES)
107	./compile_ipslcm7.sh -chimie NMHC_AER_S
108
109	end_help
110	exit;;
111
112	"-parallel") parallel=$2 ; shift ; shift ;;
113	"-arch") fcm_arch="$2" ; shift ; shift ;;
114	"-debug") optmode=debug ; shift ;;
115	"-dev") optmode=dev ; shift ;;
116	"-prod") optmode=prod ; shift ;;
117	"-regular_latlon") regular_latlon=yes ; shift ;;
118	"-resol_atm") regular_latlon=yes ; resol_atm=$2 ; shift ; shift ;;
119	"-subconfig") subconfig=$2 ; shift ; shift ;;
120	"-full") full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
121	"-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full
122	"-full_lmdz") full_lmdz="-full" ; shift ;;
123	"-full_orch") full_orch="-full" ; shift ;;
124	"-full_nemo") full_nemo=y ; shift ;;
125	"-full_inca") full_inca="-clean"; shift ;;
126	"-full_dyna") full_dyna="-full" ; shift ;;
127	"-full_oasis") full_oasis=y ; shift ;;
128	"-cleannemo") full_nemo=y ; shift ;;
129	"-rad") rad=$2; shift ; shift ;;
130	"-orch22") orchversion="orch22"; shift ;;
131	"-orch4") orchversion="orch4"; shift ;;
132	"-chimie") optchimie=$2; shift ; shift;;
133	*) echo "unknown option "$1" , exiting..." ; exit
134	esac
135	done
136
137
138	# Define which sub-configuration to compile. By default all extracted source components are compiled.
139	source define_config.sh
140
141	echo "Following options are set in current compiling:" >> $outfile
142	echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile
143	echo " resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile
144	echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile
145	echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile
146	echo " compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
147	echo >> $outfile
148
149	### Verification of argument
150	# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
151	if [ $orchversion == orch22 ] ; then
152	argorch=orchidee2.1
153	elif [ $orchversion == orch4 ] ; then
154	argorch=orchideetrunk
155	else
156	echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
157	fi
158
159	### Read host dependent default values
160	### These variables will not be changed if they were set as argument
161	###./host.sh $host
162	# Later : Following lines should be set in host.sh file
163	# begin host.sh
164	if [ $fcm_arch == default ] ; then
165	# Find out current host and source specific paths and commands for the host
166	case $( hostname -s ) in
167	jean-zay*)
168	if [[ $( hostname -s ) != "pp" ]] ; then
169	echo "Warning! You MUST compile on jean-zay-pp."
170	echo "EXIT"
171	exit
172	else
173	fcm_arch=X64_JEANZAY
174	fi ;;
175	irene170\|irene171\|irene190\|irene191\|irene192\|irene193)
176	fcm_arch=X64_IRENE;;
177	irene172\|irene173\|irene194\|irene195)
178	fcm_arch=X64_IRENE-AMD;;
179	asterix\|obelix)
180	fcm_arch=ifort_LSCE
181	if [ "${parallel}" == "mpi_omp" ] ; then
182	echo "Warning!! Currently at Obelix hybrid mode is not possible."
183	echo " Option -parallel mpi_omp is now changed to -parallel mpi"
184	echo ""
185	parallel=mpi
186	else
187	echo "You used -parallel" $parallel
188	fi ;;
189	spirit*)
190	fcm_arch=ifort_MESOIPSL;;
191	ciclad\|climserv\|loholt\|camelot)
192	fcm_arch=ifort_CICLAD;;
193	*)
194	echo Current host is not known. You must use option -arch to specify which architecuture files to use.
195	echo Exit now.
196	exit
197	esac
198	fi
199
200	# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
201	# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
202	if [ -f ARCH/arch-${fcm_arch}.env ] ; then
203	echo >> $outfile
204	echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
205	echo "Note that this new environement might be kept after compilation."
206	echo "If this is the case, source again your personal environment after compilation."
207	echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile
208	module list >> $outfile 2>&1
209	svn_version=$(module list -t \| grep subversion)
210
211	# Make a link to this file, to be used also in config.card
212	rm -f ARCH/arch.env
213	ln -s arch-${fcm_arch}.env ARCH/arch.env
214
215	# Source the file
216	source ARCH/arch.env >> $outfile 2>&1
217	if [ X$svn_version != X ] ; then
218	module load ${svn_version}
219	fi
220	echo >> $outfile
221	echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile
222	module list >> $outfile 2>&1
223	fi
224
225
226	#### Clean if full_orch
227	# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
228	if [ X${full_orch} == X"-full" ] ; then
229	rm -f $modipsl/lib/*
230	fi
231
232	#### 2 Do the compilation
233	## 2.1 Compile ioipsl
234	cd $modipsl/modeles/IOIPSL
235	echo; echo "NOW COMPILE IOIPSL"
236	echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile
237
238	echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile
239	./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1
240	# Test if compiling succeded
241	if [[ $? != 0 ]] ; then
242	echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
243	exit
244	fi
245
246	if [ $compoasis == y ] ; then
247	## 2.2 Compile oasis3-mct
248	if [ $full_oasis == y ] ; then
249	rm -rf $modipsl/oasis3-mct/BLD
250	fi
251	cd $modipsl/oasis3-mct/util/make_dir
252	echo; echo "NOW COMPILE OASIS3-MCT"
253	echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile
254	cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
255
256	echo make -f TopMakefileOasis3 >> $outfile
257	make -f TopMakefileOasis3 >> $outfile 2>&1
258
259	else
260	echo ; echo No compilation of OASIS
261	fi
262
263	## 2.3 Compile xios
264	cd $modipsl/modeles/XIOS
265	echo; echo "NOW COMPILE XIOS"
266	echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile
267	if [ $compoasis == y ] ; then
268	argoasis="--use_oasis oasis3_mct "
269	else
270	argoasis=" "
271	fi
272	echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile
273	./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1
274	# Test if compiling succeded
275	if [[ $? != 0 ]] ; then
276	echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
277	exit
278	fi
279	# Move executables to modipsl/bin
280	if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
281	mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
282	else
283	echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
284	exit
285	fi
286
287
288	## 2.4 Compile ORCHIDEE
289	# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
290	# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
291	cd $modipsl/modeles
292	rm -f ORCHIDEE
293	if [ $orchversion == orch22 ] ; then
294	ln -s ORCHIDEE_2_2 ORCHIDEE
295	cd $modipsl/modeles/ORCHIDEE_2_2
296	echo; echo "NOW COMPILE ORCHIDEE_2_2"
297	echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2" >> $outfile
298	else
299	ln -s ORCHIDEE_trunk ORCHIDEE
300	cd $modipsl/modeles/ORCHIDEE_trunk
301	echo; echo "NOW COMPILE ORCHIDEE_trunk v4"
302	echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4" >> $outfile
303	fi
304
305	# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
306	# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
307	# to ask question and wait for interactivly answer from the user.
308	if [ -f build/fcm.bld.lock ] ; then
309	echo >> $outfile
310	echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile
311	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
312	echo " The file will now be removed. " >> $outfile
313	echo >> $outfile
314	rm -f build/fcm.bld.lock
315	fi
316
317	echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile
318	./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch >> $outfile 2>&1
319	# Test if compiling finished
320	if [[ $? != 0 ]] ; then
321	echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
322	exit
323	fi
324
325	# Rename exetubles for ORCHIDEE offline driver with suffix version
326	cd $modipsl/bin
327	if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi
328	if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi
329
330
331	## 2.5 Compile NEMO
332	if [ $compnemo == y ] ; then
333	nemo_root=$modipsl/modeles/NEMO
334	cfg_ref=ORCA2_ICE_PISCES
335	cfg_wrk=ORCA_ICE_TRC
336	addkeys="key_oasis3 key_top key_si3 key_isf"
337	delkeys=""
338
339	if [ ${nemotop} == n ] ; then
340	cfg_wrk=ORCA_ICE
341	delkeys="key_top"
342	fi
343
344	if [ ${nemotop} == n ] ; then
345	echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
346	echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" >> $outfile
347	else
348	echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
349	echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" >> $outfile
350	fi
351
352	echo >> $outfile ; echo cd $nemo_root >> $outfile
353	echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. >> $outfile
354	echo >> $outfile
355
356	cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
357
358	# creation of config
359	echo >> $outfile ; echo cd $nemo_root >> $outfile
360	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile
361	echo >> $outfile
362	cd $nemo_root
363	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1
364
365
366	# Copy of specfic source files
367	echo >> $outfile ; echo cp $mysrc_path/NEMO/.90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. >> $outfile
368	echo >> $outfile
369	cp $mysrc_path/NEMO/.90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
370
371
372	if [ $full_nemo == y ] ; then
373	# To make a full compilation, first make a clean to remove all files produced during previous compilation
374	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile
375	echo >> $outfile
376	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile 2>&1
377	fi
378	echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile
379	echo >> $outfile
380	./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile 2>&1
381
382	echo >> $outfile
383	echo "Move nemo executable to modipsl/bin" >> $outfile
384	echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile
385	ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile
386	echo >> $outfile
387
388	if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
389	mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
390	else
391	echo "ERROR nemo.exe executable does not exist."
392	echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
393	exit
394	fi
395
396	else
397	echo ; echo No compilation of NEMO
398	fi
399
400	##2.6 Compile INCA
401	if [ $compinca == y ] ; then
402	cd $modipsl/modeles/INCA
403
404	echo; echo "NOW COMPILE INCA ${optchimie}"
405	echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}" >> $outfile
406
407	echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile
408	./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
409
410	# Test if compiling finished
411	if [[ $? != 0 ]] ; then
412	echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
413	echo "ALL INFORMATION IN FILE $outfile"
414	exit
415	fi
416
417	echo "Move inca.dat modipsl/bin"
418	if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then
419	mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
420	else
421	echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
422	echo "ALL INFORMATION IN FILE $outfile"
423	exit
424	fi
425
426	echo "Move tracer.def to modipsl/bin"
427	if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then
428	mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
429	fi
430
431	else
432	echo ; echo No compilation of INCA
433	fi
434
435	## 2.7 Compile LMDZ
436	cd $modipsl/modeles/LMDZ
437	# Compile LMDZ as library to couple to DYNAMICO
438	if [ $compdyna == y ] ; then
439	echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
440	echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile
441
442	# Retrieve the final svn release number, needed for radiative code suffix of executable
443	lmdzsvn=`svnversion . \| egrep -o "[0-9]+" \| awk 'NR==1'`
444	# Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7
445	cp $mysrc_path/LMDZ/phylmd/.90 libf/phylmd/.
446	cp $mysrc_path/LMDZ/dyn3d_common/.90 libf/dyn3d_common/.
447
448	# Check if the compilation of LMDZ was previsouly interupted prematured.
449	# In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
450	# to ask question and wait for interactivly answer from the user.
451	if [ -f libf/grid/dimensions.h ] \|\| [ -f .lock ] ; then
452	echo >> $outfile
453	echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile
454	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
455	echo " The files dimension.h and .lock will now be removed. " >> $outfile
456	echo >> $outfile
457	rm -f libf/grid/dimensions.h
458	rm -f .lock
459	fi
460
461	# Need to define the proper option for radiative code compilation. By default, we use rrtm
462	case $rad in
463	oldrad) opt_rad="" ;;
464	rrtm) if [ $lmdzsvn -le 4185 ] ; then opt_rad="-rrtm true" ; else opt_rad="-rad rrtm" ; fi ;;
465	ecrad) opt_rad="-rad ecrad" ;;
466	*) echo Only oldrad rrtm ecrad for rad option ; exit
467	esac
468
469	if [ $lmdzsvn -le 4185 -a $rad = "ecrad" ] ; then echo "ecrad only available for LMDZ rev starting with 4186 " ; exit ; fi
470
471	if [ $compinca == y ] ; then
472	arginca="-chimie INCA "
473	else
474	arginca=" "
475	fi
476
477	if [ $compoasis == y ] ; then
478	argoasis="-c OMCT "
479	else
480	argoasis=" "
481	fi
482
483	echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile
484	./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile 2>&1
485
486
487	# Test if compiling finished
488	if [[ $? != 0 ]] ; then
489	echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
490	exit
491	fi
492	fi
493
494
495	## 2.8 Compile DYNAMICO
496	if [ $compdyna == y ] ; then
497	cd $modipsl/modeles/DYNAMICO
498	echo; echo "NOW COMPILE DYNAMICO "
499	echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile
500
501	if [ $compoasis == y ] ; then
502	argoasis="-with_oasis "
503	else
504	argoasis=" "
505	fi
506	if [ $compinca == y ] ; then
507	arginca="-with_inca "
508	else
509	arginca=" "
510	fi
511
512
513	echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile
514	./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1
515	# Test if compiling finished
516	if [[ $? != 0 ]] ; then
517	echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
518	exit
519	fi
520	fi
521
522	## 2.9 Compile interface ICOSA_LMDZ
523	if [ $compdyna == y ] ; then
524	cd $modipsl/modeles/ICOSA_LMDZ
525	echo; echo "NOW COMPILE ICOSA_LMDZ "
526	echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile
527
528	echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile
529	./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1
530	# Test if compiling finished
531	if [[ $? != 0 ]] ; then
532	echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
533	exit
534	fi
535	# Move executables to modipsl/bin
536	if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
537	if [ $compinca == y ] ; then
538	mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
539	# Create link to be use by IPSLCM and LMDZOR without any change in the executable name
540	cd $modipsl/bin
541	rm -f icosa_lmdz_${orchversion}_${optmode}.exe
542	ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
543	else
544	mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
545	fi
546	else
547	echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
548	exit
549	fi
550	fi
551
552
553	## 2.10 Compile LMDZ for regular latlon configuration
554	if [ $regular_latlon = yes ] ; then
555
556	cd $modipsl/modeles/LMDZ
557	# Compile LMDZ regular lat-lon exectuable
558	echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
559	echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile
560	# Check if the compilation of LMDZ was previsouly interupted prematured.
561	# In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
562	# to ask question and wait for interactivly answer from the user.
563	if [ -f libf/grid/dimensions.h ] \|\| [ -f .lock ] ; then
564	echo >> $outfile
565	echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile
566	echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile
567	echo " The files dimension.h and .lock will now be removed. " >> $outfile
568	echo >> $outfile
569	rm -f libf/grid/dimensions.h
570	rm -f .lock
571	fi
572
573	if [ $compinca == y ] ; then
574	arginca="-chimie INCA"
575	else
576	arginca=""
577	fi
578
579	if [ $compoasis == y ] ; then
580	argoasis="-c OMCT"
581	else
582	argoasis=""
583	fi
584	echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile
585	./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1
586	# Test if compiling finished
587	if [[ $? != 0 ]] ; then
588	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
589	exit
590	fi
591
592	# Find executable suffix
593	suffix=_${resol_atm}_phylmd
594	if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
595	if [ $parallel == seq ] \|\| [ $parallel == none ] ; then
596	suffix=${suffix}_seq_orch_inca.e
597	else
598	if [ $compoasis == y ] ; then
599	suffix=${suffix}_para_mem_orch_couple
600	else
601	suffix=${suffix}_para_mem_orch
602	fi
603	if [ $compinca == y ] ; then
604	suffix=${suffix}_inca.e
605	else
606	suffix=${suffix}.e
607	fi
608	fi
609	echo gcm suffix = $suffix
610
611	# Move executables to modipsl/bin folder
612	echo "Move gcm.e executable to modipsl/bin"
613	if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then
614	if [ $compinca == y ] ; then
615	mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
616	# Create link to be use by IPSLCM and LMDZOR without any change in the executable name
617	cd $modipsl/bin
618	rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
619	ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
620	else
621	mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
622	fi
623	else
624	echo "ERROR gcm${suffix} executable does not exist."
625	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
626	exit
627	fi
628
629	# Find executable suffix
630	suffix=_${resol_atm}_phylmd
631	if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
632	if [ $parallel == seq ] \|\| [ $parallel == none ] ; then
633	suffix=${suffix}_seq_orch.e
634	else
635	if [ $compoasis == y ] ; then
636	suffix=${suffix}_para_mem_orch_couple.e
637	else
638	suffix=${suffix}_para_mem_orch.e
639	fi
640	fi
641	echo ce0l suffix = $suffix
642
643	# Compile ce0l initialization program for LMDZ regular lat-lon exectuable
644	cd $modipsl/modeles/LMDZ
645	echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
646	echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile
647
648	echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile
649	./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1
650	# Test if compiling finished
651	if [[ $? != 0 ]] ; then
652	echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
653	exit
654	fi
655
656
657	# Move executable ce0l to modipsl/bin folder
658	echo "Move ce0l executable to modipsl/bin"
659	if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then
660	mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
661	else
662	echo "ERROR ce0l${suffix} executable does not exist."
663	echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
664	exit
665	fi
666	fi
667
668	echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
669	echo ls -lrt modipsl/bin >> $outfile
670	ls -lrt $modipsl/bin >> $outfile
671
672	echo; echo "ALL COMPILING FINISHED" ; echo
673	echo "Executables are found in modipsl/bin"
674	echo "Check that executable names correspond with the name set in config.card before launching the job"
675	echo ls -lrt modipsl/bin
676	ls -lrt $modipsl/bin
677
678	date
679
680	exit
681
682

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