source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6686

Last change on this file since 6686 was 6686, checked in by aclsce, 6 months ago

Added handling of error status with Oasis compilation
  • Property svn:executable set to *
File size: 26.3 KB
Line 
1#!/bin/bash
2# Default options
3#
4#
5#
6date
7#### 1  Set up the compiling options
8#### Define some directories
9submitdir=$( pwd )
10modipsl=$submitdir/../..
11arch_path=$submitdir/ARCH
12mysrc_path=$submitdir/SOURCES
13export ROOT=$modipsl/modeles/DYNAMICO
14#### Set default options
15# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16regular_latlon=y
17# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y
18resol_atm=144x142x79
19# Coupled with ocean biogeochemistry (y/n)
20nemotop=y
21# Optimization mode
22# optmode=prod/dev/debug
23optmode=prod
24# fcm_arch
25fcm_arch=default
26# Default values to be overritten
27parallel=mpi_omp
28export fcm_arch parallel xios
29full_flag=""
30full_nemo=n
31full_inca=""
32full_xios=""
33full_lmdz=""
34full_orch=""
35full_dyna=""
36full_oasis=n
37# choose radiative code compilation option
38rad=rrtm
39opt_rad=""
40#choose chemistry inca configuration
41optchimie=GES
42
43# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44subconfig=default
45
46# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables.
47orchversion=orch22
48
49# Default netcdf_lib is used for XIOS but can be change by argument
50netcdf_lib=""
51
52# Output text file for compilation of each component
53datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
54outfile=$submitdir/out_compile_ipslcm7.$datestr
55echo > $outfile
56echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
57
58
59rm -f out_compile_ipslcm7
60ln -s ${outfile} out_compile_ipslcm7
61
62
63#### Read arguments
64# Loop over all arguments to modify default set up
65while (($# > 0)) ; do
66    case $1 in
67        "-h"|"-help") cat <<end_help
68########################################################################
69# Usage of the script compile_ipslcm7.sh
70#
71########################################################################
72
73./compile_ipslcm7.sh [Options]
74
75Description of all options:
76
77[-full] Full recompilation of all components. This option can be added to all other options.
78[-cleannemo] Full recompilation of NEMO component only.
79[-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid.
80                         Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid.
81[-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used.
82[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
83[-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations :
84               ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM
85               By default, all available components are compiled.
86[-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_trunk or modeles/ORCHIDEE_2_2
87                   and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22).
88
89
90Example 1: Default compilation of IPSLCM7
91./compile_ipslcm7.sh
92
93Example 2: Default compilation in debug mode
94./compile_ipslcm7.sh -debug
95
96Example 3: Default compilation with full recompilation of all components. No clean is needed.
97./compile_ipslcm7.sh -full
98
99Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution :
100./compile_ipslcm7.sh -resol_atm 144x142x95
101
102Example 5: Compilation without regular grid (only icosaedric grid)
103./compile_ipslcm7.sh -regular_latlon no
104
105Example 5: Compiltion of ORCHIDEE_trunk version
106./compile_ipslcm7.sh -orch4
107
108Example 6: compilation of a specific chemistry for INCA (default is GES)
109./compile_ipslcm7.sh -chimie NMHC_AER_S
110
111Example 7: Compilation of sub-configuration LMDZOR :
112./compile_ipslcm7.sh -subconfig LMDZOR
113
114end_help
115            exit;;
116
117        "-parallel")   parallel=$2 ; shift ; shift ;;
118        "-arch")       fcm_arch="$2" ; shift ; shift ;;
119        "-debug")      optmode=debug ; shift ;;
120        "-dev")        optmode=dev ; shift ;;
121        "-prod")       optmode=prod ; shift ;;
122        "-regular_latlon")  regular_latlon=$2 ; shift ; shift ;;
123        "-resol_atm")  regular_latlon=y ; resol_atm=$2 ; shift ; shift ;;
124        "-subconfig")  subconfig=$2 ; shift ; shift ;;
125        "-full")       full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
126        "-full_xios")  full_xios="--full" ; shift ;;  # Note only full_xios is using double dash: --full
127        "-full_lmdz")  full_lmdz="-full"  ; shift ;;
128        "-full_orch")  full_orch="-full"  ; shift ;;
129        "-full_nemo")  full_nemo=y ; shift ;;
130        "-full_inca")  full_inca="-clean"; shift ;;
131        "-full_dyna")  full_dyna="-full" ; shift ;;
132        "-full_oasis") full_oasis=y ; shift ;;
133        "-cleannemo")  full_nemo=y ; shift ;;
134        "-rad")        rad=$2; shift ; shift ;;
135        "-orch22")     orchversion="orch22"; shift ;;
136        "-orch4")      orchversion="orch4";  shift ;;
137        "-chimie")     optchimie=$2; shift ; shift;;
138        *)             echo "unknown option "$1" , exiting..." ; exit
139    esac
140done
141
142
143# Define which sub-configuration to compile. By default all extracted source components are compiled.
144source define_config.sh
145
146echo "Following options are set in current compiling:" >> $outfile
147echo "   regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile 
148echo "   resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile 
149echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile 
150echo "   full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile 
151echo "   compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
152echo >> $outfile
153### Verification of argument
154# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
155if [ $orchversion == orch22 ] ; then
156    argorch=orchidee2.1
157elif [ $orchversion == orch4 ] ; then
158    argorch=orchideetrunk
159else
160    echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
161fi
162
163### Read host dependent default values
164### These variables will not be changed if they were set as argument
165###./host.sh $host
166# Later : Following lines should be set in host.sh file
167# begin host.sh
168if [ $fcm_arch == default ] ; then
169    # Find out current host and source specific paths and commands for the host
170    case $( hostname -s ) in
171        jean-zay*)
172            if [[ $( hostname -s ) != *"pp"* ]] ; then
173                echo "Warning! You MUST compile on jean-zay-pp."
174                echo "EXIT"
175                exit
176            else
177                fcm_arch=X64_JEANZAY
178            fi ;;
179        irene170|irene171|irene190|irene191|irene192|irene193)
180            fcm_arch=X64_IRENE;;
181        irene172|irene173|irene194|irene195)
182            fcm_arch=X64_IRENE-AMD;;
183        asterix*|obelix*)
184            fcm_arch=ifort_LSCE
185            if [ "${parallel}" == "mpi_omp" ] ; then
186                echo "Warning!! Currently at Obelix hybrid mode is not possible."
187                echo "          Option -parallel mpi_omp is now changed to -parallel mpi"
188                echo ""
189                parallel=mpi
190            else
191                echo "You used -parallel" $parallel
192            fi ;;
193        spirit*)
194            fcm_arch=ifort_MESOIPSL;;
195        ciclad*|climserv*|loholt*|camelot*)
196            fcm_arch=ifort_CICLAD;;
197        *)
198            echo Current host is not known. You must use option -arch to specify which architecuture files to use.
199            echo Exit now.
200            exit
201    esac
202fi
203
204# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
205# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
206if [ -f ARCH/arch-${fcm_arch}.env ] ; then
207    echo >> $outfile
208    echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
209    echo "Note that this new environement might be kept after compilation."
210    echo "If this is the case, source again your personal environment after compilation."
211    echo " Personal module list before sourcing of ARCH/arch.env file:"    >> $outfile 
212    module list   >> $outfile 2>&1
213    svn_version=$(module list -t | grep subversion)
214       
215    # Make a link to this file, to be used also in config.card
216    rm -f ARCH/arch.env
217    ln -s arch-${fcm_arch}.env ARCH/arch.env
218
219    # Source the file
220    source ARCH/arch.env   >> $outfile 2>&1
221    if [ X$svn_version != X ] ; then
222        module load ${svn_version}
223    fi
224    echo >> $outfile
225    echo " New module list after sourcing of ARCH/arch.env file:"    >> $outfile 
226    module list   >> $outfile 2>&1
227fi
228
229
230#### Clean if full_orch
231# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
232if [ X${full_orch} == X"-full" ] ; then
233   rm -f $modipsl/lib/*
234fi
235
236#### 2 Do the compilation
237## 2.1 Compile ioipsl
238cd $modipsl/modeles/IOIPSL
239echo; echo "NOW COMPILE IOIPSL"
240echo >> $outfile ; echo " NOW COMPILE IOIPSL"   >> $outfile 
241
242echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 
243     ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 2>&1
244# Test if compiling succeded
245if [[ $? != 0 ]] ; then
246    echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
247    exit
248fi
249
250if [ $compoasis == y ] ; then
251## 2.2 Compile oasis3-mct
252if [ $full_oasis == y ] ; then
253    rm -rf $modipsl/oasis3-mct/BLD
254fi
255cd $modipsl/oasis3-mct/util/make_dir
256echo; echo "NOW COMPILE OASIS3-MCT"
257echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
258cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
259
260echo make -f TopMakefileOasis3 >> $outfile
261     make -f TopMakefileOasis3 >> $outfile 2>&1
262if [[ $? != 0 ]] ; then
263    echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP"
264    exit
265fi
266 
267
268else
269echo ; echo No compilation of OASIS
270fi
271
272## 2.3 Compile xios
273cd $modipsl/modeles/XIOS
274echo; echo "NOW COMPILE XIOS"
275echo >> $outfile ; echo " NOW COMPILE XIOS"   >> $outfile 
276if [ $compoasis == y ] ; then
277argoasis="--use_oasis oasis3_mct "
278else
279argoasis=" "
280fi
281echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 
282     ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 2>&1
283# Test if compiling succeded
284if [[ $? != 0 ]] ; then
285    echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
286    exit
287fi
288# Move executables to modipsl/bin
289if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
290    mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
291else
292    echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
293    exit
294fi
295
296
297## 2.4 Compile ORCHIDEE
298# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
299# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
300cd $modipsl/modeles
301rm -f ORCHIDEE
302if [ $orchversion == orch22 ] ; then
303    ln -s ORCHIDEE_2_2 ORCHIDEE
304    cd $modipsl/modeles/ORCHIDEE_2_2
305    echo; echo "NOW COMPILE ORCHIDEE_2_2"
306    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2"   >> $outfile 
307else
308    ln -s ORCHIDEE_trunk ORCHIDEE
309    cd $modipsl/modeles/ORCHIDEE_trunk
310    echo; echo "NOW COMPILE ORCHIDEE_trunk v4"
311    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4"   >> $outfile 
312fi
313
314# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
315# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
316# to ask question and wait for interactivly answer from the user.
317if [ -f build/fcm.bld.lock ] ; then
318    echo >> $outfile
319    echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. "   >> $outfile
320    echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
321    echo "           The file will now be removed. "   >> $outfile
322    echo >> $outfile
323    rm -f build/fcm.bld.lock
324fi
325
326echo    ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch  >> $outfile 
327        ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch  >> $outfile 2>&1
328# Test if compiling finished
329if [[ $? != 0 ]] ; then
330    echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
331    exit
332fi
333
334# Rename exetubles for ORCHIDEE offline driver with suffix version
335cd $modipsl/bin
336if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi
337if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi
338
339
340## 2.5 Compile NEMO
341if [ $compnemo == y ] ; then
342    nemo_root=$modipsl/modeles/NEMO
343    cfg_ref=ORCA2_ICE_PISCES
344    cfg_wrk=ORCA_ICE_TRC
345    addkeys="key_oasis3 key_top key_si3 key_isf"
346    delkeys=""
347   
348    if [ ${nemotop} == n ] ; then
349        cfg_wrk=ORCA_ICE
350        delkeys="key_top"
351    fi
352   
353    if [ ${nemotop} == n ] ; then
354        echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
355        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"   >> $outfile
356    else
357        echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
358        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"   >> $outfile
359    fi
360   
361    echo >> $outfile ; echo cd $nemo_root  >> $outfile
362    echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.   >> $outfile
363    echo >> $outfile
364   
365    cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
366   
367    # creation of config
368    echo >> $outfile ; echo cd $nemo_root  >> $outfile
369    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
370    echo >> $outfile
371    cd $nemo_root
372    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0  add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
373   
374   
375    # Copy of specfic source files
376    echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.   >> $outfile
377    echo >> $outfile
378    cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
379   
380   
381    if [ $full_nemo == y ] ; then
382        # To make a full compilation, first make a clean to remove all files produced during previous compilation
383        echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean   >> $outfile
384        echo >> $outfile
385        ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean  >> $outfile 2>&1
386    fi
387    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile
388    echo >> $outfile
389    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile 2>&1
390   
391    echo >> $outfile
392    echo "Move nemo executable to modipsl/bin" >> $outfile
393    echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin   >> $outfile
394    ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin  >> $outfile
395    echo >> $outfile
396   
397    if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
398        mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
399    else
400        echo "ERROR nemo.exe executable does not exist."
401        echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
402        exit
403    fi
404   
405else
406    echo ; echo No compilation of NEMO
407fi
408
409##2.6  Compile INCA
410if [ $compinca == y ] ; then
411    cd $modipsl/modeles/INCA
412   
413    echo; echo "NOW COMPILE INCA ${optchimie}"
414    echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}"   >> $outfile 
415   
416    echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch}  -arch_path $arch_path $full_inca  >> $outfile
417    ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp  -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
418   
419    # Test if compiling finished
420    if [[ $? != 0 ]] ; then
421        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
422        echo "ALL INFORMATION IN FILE $outfile"
423        exit
424    fi
425   
426    echo "Move inca.dat modipsl/bin"
427    if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ;  then 
428        mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
429    else
430        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
431        echo "ALL INFORMATION IN FILE $outfile"
432        exit   
433    fi
434   
435    echo "Move tracer.def to  modipsl/bin"
436    if [[ -f $modipsl/modeles/INCA/tracer.def ]] ;  then
437        mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
438    fi
439   
440else
441    echo ; echo No compilation of INCA
442fi
443
444## 2.7 Compile LMDZ
445cd $modipsl/modeles/LMDZ
446# Compile LMDZ as library to couple to DYNAMICO
447if [ $compdyna == y ] ; then
448    echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
449    echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"   >> $outfile 
450   
451    # Retrieve the final svn release number, needed for radiative code suffix of executable
452    lmdzsvn=`svnversion . | egrep -o "[0-9]+"  | awk 'NR==1'`
453    # Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7
454    cp $mysrc_path/LMDZ/phylmd/*.*90  libf/phylmd/.
455    cp $mysrc_path/LMDZ/dyn3d_common/*.*90  libf/dyn3d_common/.
456   
457    # Check if the compilation of LMDZ was previsouly interupted prematured.
458    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
459    # to ask question and wait for interactivly answer from the user.
460    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
461        echo >> $outfile
462        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
463        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
464        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
465        echo >> $outfile
466        rm -f libf/grid/dimensions.h
467        rm -f .lock
468    fi
469   
470    # Need to define the proper option for radiative code compilation. By default, we use rrtm
471    case $rad in
472        oldrad) opt_rad="" ;;
473        rrtm)   if [ $lmdzsvn -le 4185 ] ; then opt_rad="-rrtm true" ; else opt_rad="-rad rrtm" ; fi ;;
474        ecrad)  opt_rad="-rad ecrad" ;;
475        *) echo Only oldrad rrtm ecrad for rad option ; exit
476    esac
477   
478    if [ $lmdzsvn -le 4185 -a $rad = "ecrad" ] ; then echo "ecrad only available for LMDZ rev starting with 4186 " ; exit ; fi
479   
480    if [ $compinca == y ] ; then
481        arginca="-chimie INCA "
482    else
483        arginca=" "
484    fi
485   
486    if [ $compoasis == y ] ; then
487        argoasis="-c OMCT "
488    else
489        argoasis=" "
490    fi
491
492    echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 
493    ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 2>&1
494   
495   
496    # Test if compiling finished
497    if [[ $? != 0 ]] ; then
498        echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
499        exit
500    fi
501fi
502
503
504## 2.8 Compile DYNAMICO
505if [ $compdyna == y ] ; then
506    cd $modipsl/modeles/DYNAMICO
507    echo; echo "NOW COMPILE DYNAMICO "
508    echo >> $outfile ; echo " NOW COMPILE DYNAMICO"   >> $outfile 
509   
510    if [ $compoasis == y ] ; then
511        argoasis="-with_oasis "
512    else
513        argoasis=" "
514    fi
515    if [ $compinca == y ] ; then
516        arginca="-with_inca "
517    else
518        arginca=" "
519    fi
520   
521   
522    echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 
523    ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 2>&1
524    # Test if compiling finished
525    if [[ $? != 0 ]] ; then
526        echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
527        exit
528    fi
529fi
530   
531## 2.9 Compile interface ICOSA_LMDZ
532if [ $compdyna == y ] ; then
533    cd $modipsl/modeles/ICOSA_LMDZ
534    echo; echo "NOW COMPILE ICOSA_LMDZ "
535    echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ"   >> $outfile 
536   
537    echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 
538    ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 2>&1
539    # Test if compiling finished
540    if [[ $? != 0 ]] ; then
541        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
542        exit
543    fi
544    # Move executables to modipsl/bin
545    if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
546        if [ $compinca == y ] ; then
547            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
548            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
549            cd  $modipsl/bin
550            rm -f icosa_lmdz_${orchversion}_${optmode}.exe
551            ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
552        else
553            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
554        fi
555    else
556        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
557        exit
558    fi
559fi
560
561
562## 2.10 Compile LMDZ for regular latlon configuration
563if [ $regular_latlon = y ] ; then
564
565    cd $modipsl/modeles/LMDZ
566    # Compile LMDZ regular lat-lon exectuable
567    echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
568    echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"   >> $outfile 
569    # Check if the compilation of LMDZ was previsouly interupted prematured.
570    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
571    # to ask question and wait for interactivly answer from the user.
572    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
573        echo >> $outfile
574        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
575        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
576        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
577        echo >> $outfile
578        rm -f libf/grid/dimensions.h
579        rm -f .lock
580    fi
581
582    if [ $compinca == y ] ; then
583        arginca="-chimie INCA"
584    else
585        arginca=""
586    fi
587   
588    if [ $compoasis == y ] ; then
589        argoasis="-c OMCT"
590    else
591        argoasis=""
592    fi
593    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 
594         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 2>&1
595    # Test if compiling finished
596    if [[ $? != 0 ]] ; then
597        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
598        exit
599    fi
600
601    # Find executable suffix
602    suffix=_${resol_atm}_phylmd
603    if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
604    if [ $parallel == seq ] || [ $parallel == none ] ; then
605        suffix=${suffix}_seq_orch_inca.e
606    else
607        if [ $compoasis == y ] ; then
608            suffix=${suffix}_para_mem_orch_couple
609        else
610            suffix=${suffix}_para_mem_orch
611        fi
612        if [ $compinca == y ] ; then
613            suffix=${suffix}_inca.e
614        else
615            suffix=${suffix}.e
616        fi
617    fi
618    echo gcm suffix = $suffix
619   
620    # Move executables to modipsl/bin folder
621    echo "Move gcm.e executable to modipsl/bin"
622    if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ;  then
623        if [ $compinca == y ] ; then
624            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
625            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
626            cd $modipsl/bin
627            rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
628            ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
629        else
630            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
631        fi
632    else
633        echo "ERROR gcm${suffix} executable does not exist." 
634        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
635        exit
636    fi   
637
638    # Find executable suffix
639    suffix=_${resol_atm}_phylmd
640    if [ $lmdzsvn -ge 4186 ] ; then suffix=${suffix}_${rad} ; fi
641    if [ $parallel == seq ] || [ $parallel == none ] ; then
642        suffix=${suffix}_seq_orch.e
643    else
644        if [ $compoasis == y ] ; then
645            suffix=${suffix}_para_mem_orch_couple.e
646        else
647            suffix=${suffix}_para_mem_orch.e
648        fi
649    fi
650    echo ce0l suffix = $suffix
651
652    # Compile ce0l initialization program for LMDZ regular lat-lon exectuable
653    cd $modipsl/modeles/LMDZ
654    echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
655    echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"   >> $outfile 
656
657    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 
658         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 2>&1
659    # Test if compiling finished
660    if [[ $? != 0 ]] ; then
661        echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
662        exit
663    fi
664   
665 
666    # Move executable ce0l to modipsl/bin folder
667    echo "Move ce0l executable to modipsl/bin"
668    if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ;  then
669        mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
670    else
671        echo "ERROR ce0l${suffix} executable does not exist." 
672        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
673        exit
674    fi
675fi
676
677echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
678echo ls -lrt modipsl/bin >> $outfile
679ls -lrt $modipsl/bin >> $outfile
680
681echo; echo "ALL COMPILING FINISHED" ; echo
682echo "Executables are found in modipsl/bin"
683echo "Check that executable names correspond with the name set in config.card before launching the job"
684echo ls -lrt modipsl/bin
685ls -lrt $modipsl/bin
686
687date
688
689exit
690
691
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