source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6692

Last change on this file since 6692 was 6692, checked in by acosce, 5 months ago

update compilation script for IPSLCM7 :

  • remove test on svn revision for lmdz (we always use with this config a version uptodate with radiative code)
  • add the definition of opt_rad for lmdz compilation in case of regular grid (for the case we don't compile ico grid)
  • Property svn:executable set to *
File size: 26.5 KB
Line 
1#!/bin/bash
2# Default options
3#
4#
5#
6date
7#### 1  Set up the compiling options
8#### Define some directories
9submitdir=$( pwd )
10modipsl=$submitdir/../..
11arch_path=$submitdir/ARCH
12mysrc_path=$submitdir/SOURCES
13export ROOT=$modipsl/modeles/DYNAMICO
14#### Set default options
15# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16regular_latlon=y
17# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y
18resol_atm=144x142x79
19# Coupled with ocean biogeochemistry (y/n)
20nemotop=y
21# Optimization mode
22# optmode=prod/dev/debug
23optmode=prod
24# fcm_arch
25fcm_arch=default
26# Default values to be overritten
27parallel=mpi_omp
28export fcm_arch parallel xios
29full_flag=""
30full_nemo=n
31full_inca=""
32full_xios=""
33full_lmdz=""
34full_orch=""
35full_dyna=""
36full_oasis=n
37# choose radiative code compilation option
38rad=rrtm
39opt_rad=""
40#choose chemistry inca configuration
41optchimie=GES
42
43# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44subconfig=default
45
46# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_trunk is compiled. This is used as argument and also in the suffix of the executables.
47orchversion=orch22
48# orchdriver : Permet to compile the ORCHIDEE offline drivers. This option is activated by setting -orchdriver as argument.
49# By default, drivers are not compiled.
50orchdriver=""
51
52# Default netcdf_lib is used for XIOS but can be change by argument
53netcdf_lib=""
54
55# Output text file for compilation of each component
56datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
57outfile=$submitdir/out_compile_ipslcm7.$datestr
58echo > $outfile
59echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
60
61
62rm -f out_compile_ipslcm7
63ln -s ${outfile} out_compile_ipslcm7
64
65
66#### Read arguments
67# Loop over all arguments to modify default set up
68while (($# > 0)) ; do
69    case $1 in
70        "-h"|"-help") cat <<end_help
71########################################################################
72# Usage of the script compile_ipslcm7.sh
73#
74########################################################################
75
76./compile_ipslcm7.sh [Options]
77
78Description of all options:
79
80[-full] Full recompilation of all components. This option can be added to all other options.
81[-cleannemo] Full recompilation of NEMO component only.
82[-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid.
83                         Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid.
84[-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used.
85[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
86[-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations :
87               ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM
88               By default, all available components are compiled.
89[-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_trunk or modeles/ORCHIDEE_2_2
90                   and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22).
91[-orchdriver]   Activate compilation of orchidee offline drivers
92
93Example 1: Default compilation of IPSLCM7
94./compile_ipslcm7.sh
95
96Example 2: Default compilation in debug mode
97./compile_ipslcm7.sh -debug
98
99Example 3: Default compilation with full recompilation of all components. No clean is needed.
100./compile_ipslcm7.sh -full
101
102Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution :
103./compile_ipslcm7.sh -resol_atm 144x142x95
104
105Example 5: Compilation without regular grid (only icosaedric grid)
106./compile_ipslcm7.sh -regular_latlon no
107
108Example 5: Compiltion of ORCHIDEE_trunk version
109./compile_ipslcm7.sh -orch4
110
111Example 6: compilation of a specific chemistry for INCA (default is GES)
112./compile_ipslcm7.sh -chimie NMHC_AER_S
113
114Example 7: Compilation of sub-configuration LMDZOR :
115./compile_ipslcm7.sh -subconfig LMDZOR
116
117end_help
118            exit;;
119
120        "-parallel")   parallel=$2 ; shift ; shift ;;
121        "-arch")       fcm_arch="$2" ; shift ; shift ;;
122        "-debug")      optmode=debug ; shift ;;
123        "-dev")        optmode=dev ; shift ;;
124        "-prod")       optmode=prod ; shift ;;
125        "-regular_latlon")  regular_latlon=$2 ; shift ; shift ;;
126        "-resol_atm")  regular_latlon=y ; resol_atm=$2 ; shift ; shift ;;
127        "-subconfig")  subconfig=$2 ; shift ; shift ;;
128        "-full")       full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
129        "-full_xios")  full_xios="--full" ; shift ;;  # Note only full_xios is using double dash: --full
130        "-full_lmdz")  full_lmdz="-full"  ; shift ;;
131        "-full_orch")  full_orch="-full"  ; shift ;;
132        "-full_nemo")  full_nemo=y ; shift ;;
133        "-full_inca")  full_inca="-clean"; shift ;;
134        "-full_dyna")  full_dyna="-full" ; shift ;;
135        "-full_oasis") full_oasis=y ; shift ;;
136        "-cleannemo")  full_nemo=y ; shift ;;
137        "-rad")        rad=$2; shift ; shift ;;
138        "-orch22")     orchversion="orch22"; shift ;;
139        "-orch4")      orchversion="orch4";  shift ;;
140        "-orchdriver") orchdriver="-driver";  shift ;;
141        "-chimie")     optchimie=$2; shift ; shift;;
142        *)             echo "unknown option "$1" , exiting..." ; exit
143    esac
144done
145
146
147# Define which sub-configuration to compile. By default all extracted source components are compiled.
148source define_config.sh
149
150echo "Following options are set in current compiling:" >> $outfile
151echo "   regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile 
152echo "   resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile 
153echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile 
154echo "   full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile 
155echo "   compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
156echo >> $outfile
157### Verification of argument
158# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
159if [ $orchversion == orch22 ] ; then
160    argorch=orchidee2.1
161elif [ $orchversion == orch4 ] ; then
162    argorch=orchideetrunk
163else
164    echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
165fi
166
167### Read host dependent default values
168### These variables will not be changed if they were set as argument
169###./host.sh $host
170# Later : Following lines should be set in host.sh file
171# begin host.sh
172if [ $fcm_arch == default ] ; then
173    # Find out current host and source specific paths and commands for the host
174    case $( hostname -s ) in
175        jean-zay*)
176            if [[ $( hostname -s ) != *"pp"* ]] ; then
177                echo "Warning! You MUST compile on jean-zay-pp."
178                echo "EXIT"
179                exit
180            else
181                fcm_arch=X64_JEANZAY
182            fi ;;
183        irene170|irene171|irene190|irene191|irene192|irene193)
184            fcm_arch=X64_IRENE;;
185        irene172|irene173|irene194|irene195)
186            fcm_arch=X64_IRENE-AMD;;
187        asterix*|obelix*)
188            fcm_arch=ifort_LSCE
189            if [ "${parallel}" == "mpi_omp" ] ; then
190                echo "Warning!! Currently at Obelix hybrid mode is not possible."
191                echo "          Option -parallel mpi_omp is now changed to -parallel mpi"
192                echo ""
193                parallel=mpi
194            else
195                echo "You used -parallel" $parallel
196            fi ;;
197        spirit*)
198            fcm_arch=ifort_MESOIPSL;;
199        ciclad*|climserv*|loholt*|camelot*)
200            fcm_arch=ifort_CICLAD;;
201        *)
202            echo Current host is not known. You must use option -arch to specify which architecuture files to use.
203            echo Exit now.
204            exit
205    esac
206fi
207
208# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
209# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
210if [ -f ARCH/arch-${fcm_arch}.env ] ; then
211    echo >> $outfile
212    echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
213    echo "Note that this new environement might be kept after compilation."
214    echo "If this is the case, source again your personal environment after compilation."
215    echo " Personal module list before sourcing of ARCH/arch.env file:"    >> $outfile 
216    module list   >> $outfile 2>&1
217    svn_version=$(module list -t | grep subversion)
218       
219    # Make a link to this file, to be used also in config.card
220    rm -f ARCH/arch.env
221    ln -s arch-${fcm_arch}.env ARCH/arch.env
222
223    # Source the file
224    source ARCH/arch.env   >> $outfile 2>&1
225    if [ X$svn_version != X ] ; then
226        module load ${svn_version}
227    fi
228    echo >> $outfile
229    echo " New module list after sourcing of ARCH/arch.env file:"    >> $outfile 
230    module list   >> $outfile 2>&1
231fi
232
233
234#### Clean if full_orch
235# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
236if [ X${full_orch} == X"-full" ] ; then
237   rm -f $modipsl/lib/*
238fi
239
240#### 2 Do the compilation
241## 2.1 Compile ioipsl
242cd $modipsl/modeles/IOIPSL
243echo; echo "NOW COMPILE IOIPSL"
244echo >> $outfile ; echo " NOW COMPILE IOIPSL"   >> $outfile 
245
246echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 
247     ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 2>&1
248# Test if compiling succeded
249if [[ $? != 0 ]] ; then
250    echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
251    exit
252fi
253
254if [ $compoasis == y ] ; then
255## 2.2 Compile oasis3-mct
256if [ $full_oasis == y ] ; then
257    rm -rf $modipsl/oasis3-mct/BLD
258fi
259cd $modipsl/oasis3-mct/util/make_dir
260echo; echo "NOW COMPILE OASIS3-MCT"
261echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
262cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
263
264echo make -f TopMakefileOasis3 >> $outfile
265     make -f TopMakefileOasis3 >> $outfile 2>&1
266if [[ $? != 0 ]] ; then
267    echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP"
268    exit
269fi
270 
271
272else
273echo ; echo No compilation of OASIS
274fi
275
276## 2.3 Compile xios
277cd $modipsl/modeles/XIOS
278echo; echo "NOW COMPILE XIOS"
279echo >> $outfile ; echo " NOW COMPILE XIOS"   >> $outfile 
280if [ $compoasis == y ] ; then
281argoasis="--use_oasis oasis3_mct "
282else
283argoasis=" "
284fi
285echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 
286     ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 2>&1
287# Test if compiling succeded
288if [[ $? != 0 ]] ; then
289    echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
290    exit
291fi
292# Move executables to modipsl/bin
293if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
294    mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
295else
296    echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
297    exit
298fi
299
300
301## 2.4 Compile ORCHIDEE
302# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
303# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
304cd $modipsl/modeles
305rm -f ORCHIDEE
306if [ $orchversion == orch22 ] ; then
307    ln -s ORCHIDEE_2_2 ORCHIDEE
308    cd $modipsl/modeles/ORCHIDEE_2_2
309    echo; echo "NOW COMPILE ORCHIDEE_2_2"
310    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2"   >> $outfile 
311else
312    ln -s ORCHIDEE_trunk ORCHIDEE
313    cd $modipsl/modeles/ORCHIDEE_trunk
314    echo; echo "NOW COMPILE ORCHIDEE_trunk v4"
315    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_trunk v4"   >> $outfile 
316fi
317
318# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
319# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
320# to ask question and wait for interactivly answer from the user.
321if [ -f build/fcm.bld.lock ] ; then
322    echo >> $outfile
323    echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. "   >> $outfile
324    echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
325    echo "           The file will now be removed. "   >> $outfile
326    echo >> $outfile
327    rm -f build/fcm.bld.lock
328fi
329
330echo    ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 
331        ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 2>&1
332# Test if compiling finished
333if [[ $? != 0 ]] ; then
334    echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
335    exit
336fi
337
338# Rename exetubles for ORCHIDEE offline driver with suffix version
339cd $modipsl/bin
340if [ -f orchideedriver ] ; then mv orchideedriver orchideedriver.$orchversion ; fi
341if [ -f orchidee_ol ] ; then mv orchidee_ol orchidee_ol.$orchversion ; fi
342
343
344## 2.5 Compile NEMO
345if [ $compnemo == y ] ; then
346    nemo_root=$modipsl/modeles/NEMO
347    cfg_ref=ORCA2_ICE_PISCES
348    cfg_wrk=ORCA_ICE_TRC
349    addkeys="key_oasis3 key_top key_si3 key_isf"
350    delkeys=""
351   
352    if [ ${nemotop} == n ] ; then
353        cfg_wrk=ORCA_ICE
354        delkeys="key_top"
355    fi
356   
357    if [ ${nemotop} == n ] ; then
358        echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
359        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"   >> $outfile
360    else
361        echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
362        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"   >> $outfile
363    fi
364   
365    echo >> $outfile ; echo cd $nemo_root  >> $outfile
366    echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.   >> $outfile
367    echo >> $outfile
368   
369    cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
370   
371    # creation of config
372    echo >> $outfile ; echo cd $nemo_root  >> $outfile
373    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
374    echo >> $outfile
375    cd $nemo_root
376    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0  add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
377   
378   
379    # Copy of specfic source files
380    echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.   >> $outfile
381    echo >> $outfile
382    cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
383   
384   
385    if [ $full_nemo == y ] ; then
386        # To make a full compilation, first make a clean to remove all files produced during previous compilation
387        echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean   >> $outfile
388        echo >> $outfile
389        ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean  >> $outfile 2>&1
390    fi
391    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile
392    echo >> $outfile
393    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile 2>&1
394   
395    echo >> $outfile
396    echo "Move nemo executable to modipsl/bin" >> $outfile
397    echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin   >> $outfile
398    ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin  >> $outfile
399    echo >> $outfile
400   
401    if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
402        mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
403    else
404        echo "ERROR nemo.exe executable does not exist."
405        echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
406        exit
407    fi
408   
409else
410    echo ; echo No compilation of NEMO
411fi
412
413##2.6  Compile INCA
414if [ $compinca == y ] ; then
415    cd $modipsl/modeles/INCA
416   
417    echo; echo "NOW COMPILE INCA ${optchimie}"
418    echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}"   >> $outfile 
419   
420    echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch}  -arch_path $arch_path $full_inca  >> $outfile
421    ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp  -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
422   
423    # Test if compiling finished
424    if [[ $? != 0 ]] ; then
425        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
426        echo "ALL INFORMATION IN FILE $outfile"
427        exit
428    fi
429   
430    echo "Move inca.dat modipsl/bin"
431    if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ;  then 
432        mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
433    else
434        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
435        echo "ALL INFORMATION IN FILE $outfile"
436        exit   
437    fi
438   
439    echo "Move tracer.def to  modipsl/bin"
440    if [[ -f $modipsl/modeles/INCA/tracer.def ]] ;  then
441        mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
442    fi
443   
444else
445    echo ; echo No compilation of INCA
446fi
447
448## 2.7 Compile LMDZ
449cd $modipsl/modeles/LMDZ
450# Compile LMDZ as library to couple to DYNAMICO
451if [ $compdyna == y ] ; then
452    echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
453    echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"   >> $outfile 
454   
455    # Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7
456    cp $mysrc_path/LMDZ/phylmd/*.*90  libf/phylmd/.
457    cp $mysrc_path/LMDZ/dyn3d_common/*.*90  libf/dyn3d_common/.
458   
459    # Check if the compilation of LMDZ was previsouly interupted prematured.
460    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
461    # to ask question and wait for interactivly answer from the user.
462    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
463        echo >> $outfile
464        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
465        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
466        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
467        echo >> $outfile
468        rm -f libf/grid/dimensions.h
469        rm -f .lock
470    fi
471   
472    # Need to define the proper option for radiative code compilation. By default, we use rrtm
473    case $rad in
474        oldrad) opt_rad="" ;;
475        rrtm)    opt_rad="-rad rrtm" ;;
476        ecrad)  opt_rad="-rad ecrad" ;;
477        *) echo Only oldrad rrtm ecrad for rad option ; exit
478    esac
479   
480   
481    if [ $compinca == y ] ; then
482        arginca="-chimie INCA "
483    else
484        arginca=" "
485    fi
486   
487    if [ $compoasis == y ] ; then
488        argoasis="-c OMCT "
489    else
490        argoasis=" "
491    fi
492
493    echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 
494    ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 2>&1
495   
496   
497    # Test if compiling finished
498    if [[ $? != 0 ]] ; then
499        echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
500        exit
501    fi
502fi
503
504
505## 2.8 Compile DYNAMICO
506if [ $compdyna == y ] ; then
507    cd $modipsl/modeles/DYNAMICO
508    echo; echo "NOW COMPILE DYNAMICO "
509    echo >> $outfile ; echo " NOW COMPILE DYNAMICO"   >> $outfile 
510   
511    if [ $compoasis == y ] ; then
512        argoasis="-with_oasis "
513    else
514        argoasis=" "
515    fi
516    if [ $compinca == y ] ; then
517        arginca="-with_inca "
518    else
519        arginca=" "
520    fi
521   
522   
523    echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 
524    ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 2>&1
525    # Test if compiling finished
526    if [[ $? != 0 ]] ; then
527        echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
528        exit
529    fi
530fi
531   
532## 2.9 Compile interface ICOSA_LMDZ
533if [ $compdyna == y ] ; then
534    cd $modipsl/modeles/ICOSA_LMDZ
535    echo; echo "NOW COMPILE ICOSA_LMDZ "
536    echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ"   >> $outfile 
537   
538    echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 
539    ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 2>&1
540    # Test if compiling finished
541    if [[ $? != 0 ]] ; then
542        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
543        exit
544    fi
545    # Move executables to modipsl/bin
546    if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
547        if [ $compinca == y ] ; then
548            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
549            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
550            cd  $modipsl/bin
551            rm -f icosa_lmdz_${orchversion}_${optmode}.exe
552            ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
553        else
554            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
555        fi
556    else
557        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
558        exit
559    fi
560fi
561
562
563## 2.10 Compile LMDZ for regular latlon configuration
564if [ $regular_latlon = y ] ; then
565
566    cd $modipsl/modeles/LMDZ
567    # Compile LMDZ regular lat-lon exectuable
568    echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
569    echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"   >> $outfile 
570    # Check if the compilation of LMDZ was previsouly interupted prematured.
571    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
572    # to ask question and wait for interactivly answer from the user.
573    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
574        echo >> $outfile
575        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
576        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
577        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
578        echo >> $outfile
579        rm -f libf/grid/dimensions.h
580        rm -f .lock
581    fi
582
583    # Need to define the proper option for radiative code compilation. By default, we use rrtm
584    case $rad in
585        oldrad) opt_rad="" ;;
586        rrtm)    opt_rad="-rad rrtm" ;;
587        ecrad)  opt_rad="-rad ecrad" ;;
588        *) echo Only oldrad rrtm ecrad for rad option ; exit
589    esac
590   
591    if [ $compinca == y ] ; then
592        arginca="-chimie INCA"
593    else
594        arginca=""
595    fi
596   
597    if [ $compoasis == y ] ; then
598        argoasis="-c OMCT"
599    else
600        argoasis=""
601    fi
602    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 
603         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 2>&1
604    # Test if compiling finished
605    if [[ $? != 0 ]] ; then
606        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
607        exit
608    fi
609
610    # Find executable suffix
611    suffix=_${resol_atm}_phylmd
612    suffix=${suffix}_${rad} 
613    if [ $parallel == seq ] || [ $parallel == none ] ; then
614        suffix=${suffix}_seq_orch_inca.e
615    else
616        if [ $compoasis == y ] ; then
617            suffix=${suffix}_para_mem_orch_couple
618        else
619            suffix=${suffix}_para_mem_orch
620        fi
621        if [ $compinca == y ] ; then
622            suffix=${suffix}_inca.e
623        else
624            suffix=${suffix}.e
625        fi
626    fi
627    echo gcm suffix = $suffix
628   
629    # Move executables to modipsl/bin folder
630    echo "Move gcm.e executable to modipsl/bin"
631    if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ;  then
632        if [ $compinca == y ] ; then
633            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
634            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
635            cd $modipsl/bin
636            rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
637            ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
638        else
639            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
640        fi
641    else
642        echo "ERROR gcm${suffix} executable does not exist." 
643        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
644        exit
645    fi   
646
647    # Find executable suffix
648    suffix=_${resol_atm}_phylmd
649    suffix=${suffix}_${rad} 
650    if [ $parallel == seq ] || [ $parallel == none ] ; then
651        suffix=${suffix}_seq_orch.e
652    else
653        if [ $compoasis == y ] ; then
654            suffix=${suffix}_para_mem_orch_couple.e
655        else
656            suffix=${suffix}_para_mem_orch.e
657        fi
658    fi
659    echo ce0l suffix = $suffix
660
661    # Compile ce0l initialization program for LMDZ regular lat-lon exectuable
662    cd $modipsl/modeles/LMDZ
663    echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
664    echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"   >> $outfile 
665
666    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 
667         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 2>&1
668    # Test if compiling finished
669    if [[ $? != 0 ]] ; then
670        echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
671        exit
672    fi
673   
674 
675    # Move executable ce0l to modipsl/bin folder
676    echo "Move ce0l executable to modipsl/bin"
677    if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ;  then
678        mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
679    else
680        echo "ERROR ce0l${suffix} executable does not exist." 
681        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
682        exit
683    fi
684fi
685
686echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
687echo ls -lrt modipsl/bin >> $outfile
688ls -lrt $modipsl/bin >> $outfile
689
690echo; echo "ALL COMPILING FINISHED" ; echo
691echo "Executables are found in modipsl/bin"
692echo "Check that executable names correspond with the name set in config.card before launching the job"
693echo ls -lrt modipsl/bin
694ls -lrt $modipsl/bin
695
696date
697
698exit
699
700
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