source: CONFIG/UNIFORM/v7/IPSLCM7/compile_ipslcm7.sh @ 6722

Last change on this file since 6722 was 6722, checked in by acosce, 5 months ago

fix a bug when DYNAMICO is not extracted in IPSLCM7 configuration

  • Property svn:executable set to *
File size: 26.7 KB
Line 
1#!/bin/bash
2# Default options
3#
4#
5#
6date
7#### 1  Set up the compiling options
8#### Define some directories
9submitdir=$( pwd )
10modipsl=$submitdir/../..
11arch_path=$submitdir/ARCH
12mysrc_path=$submitdir/SOURCES
13export ROOT=$modipsl/modeles/IOIPSL
14#### Set default options
15# Activate compilation of LMDZ for regular latlon grid without DYNAMICO
16regular_latlon=y
17# Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y
18resol_atm=144x142x79
19# Coupled with ocean biogeochemistry (y/n)
20nemotop=y
21# Optimization mode
22# optmode=prod/dev/debug
23optmode=prod
24# fcm_arch
25fcm_arch=default
26# Default values to be overritten
27parallel=mpi_omp
28export fcm_arch parallel xios
29full_flag=""
30full_nemo=n
31full_inca=""
32full_xios=""
33full_lmdz=""
34full_orch=""
35full_dyna=""
36full_oasis=n
37# choose radiative code compilation option
38rad=rrtm
39opt_rad=""
40#choose chemistry inca configuration
41optchimie=GES
42
43# subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled.
44subconfig=default
45
46# orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_4 is compiled. This is used as argument and also in the suffix of the executables.
47orchversion=orch22
48# orchdriver : Permet to compile the ORCHIDEE offline drivers. This option is activated by setting -orchdriver as argument.
49# Drivers are now compiled by default
50orchdriver="-driver"
51
52# Default netcdf_lib is used for XIOS but can be change by argument
53netcdf_lib=""
54
55# Output text file for compilation of each component
56datestr=`LC_ALL=C date +"%Y%m%dT%H%M"`
57outfile=$submitdir/out_compile_ipslcm7.$datestr
58echo > $outfile
59echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo
60
61
62rm -f out_compile_ipslcm7
63ln -s ${outfile} out_compile_ipslcm7
64
65
66#### Read arguments
67# Loop over all arguments to modify default set up
68while (($# > 0)) ; do
69    case $1 in
70        "-h"|"-help") cat <<end_help
71########################################################################
72# Usage of the script compile_ipslcm7.sh
73#
74########################################################################
75
76./compile_ipslcm7.sh [Options]
77
78Description of all options:
79
80[-full] Full recompilation of all components. This option can be added to all other options.
81[-cleannemo] Full recompilation of NEMO component only.
82[-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid.
83                         Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid.
84[-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used.
85[-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod.
86[-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations :
87               ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM
88               By default, all available components are compiled.
89[-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_4 or modeles/ORCHIDEE_2_2
90                   and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22).
91[-orchdriver]   Activate compilation of orchidee offline drivers
92
93Example 1: Default compilation of IPSLCM7
94./compile_ipslcm7.sh
95
96Example 2: Default compilation in debug mode
97./compile_ipslcm7.sh -debug
98
99Example 3: Default compilation with full recompilation of all components. No clean is needed.
100./compile_ipslcm7.sh -full
101
102Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution :
103./compile_ipslcm7.sh -resol_atm 144x142x95
104
105Example 5: Compilation without regular grid (only icosaedric grid)
106./compile_ipslcm7.sh -regular_latlon no
107
108Example 5: Compilation of ORCHIDEE_4 version
109./compile_ipslcm7.sh -orch4
110
111Example 6: compilation of a specific chemistry for INCA (default is GES)
112./compile_ipslcm7.sh -chimie NMHC_AER_S
113
114Example 7: Compilation of sub-configuration LMDZOR :
115./compile_ipslcm7.sh -subconfig LMDZOR
116
117end_help
118            exit;;
119
120        "-parallel")   parallel=$2 ; shift ; shift ;;
121        "-arch")       fcm_arch="$2" ; shift ; shift ;;
122        "-debug")      optmode=debug ; shift ;;
123        "-dev")        optmode=dev ; shift ;;
124        "-prod")       optmode=prod ; shift ;;
125        "-regular_latlon")  regular_latlon=$2 ; shift ; shift ;;
126        "-resol_atm")  regular_latlon=y ; resol_atm=$2 ; shift ; shift ;;
127        "-subconfig")  subconfig=$2 ; shift ; shift ;;
128        "-full")       full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;;
129        "-full_xios")  full_xios="--full" ; shift ;;  # Note only full_xios is using double dash: --full
130        "-full_lmdz")  full_lmdz="-full"  ; shift ;;
131        "-full_orch")  full_orch="-full"  ; shift ;;
132        "-full_nemo")  full_nemo=y ; shift ;;
133        "-full_inca")  full_inca="-clean"; shift ;;
134        "-full_dyna")  full_dyna="-full" ; shift ;;
135        "-full_oasis") full_oasis=y ; shift ;;
136        "-cleannemo")  full_nemo=y ; shift ;;
137        "-rad")        rad=$2; shift ; shift ;;
138        "-orch22")     orchversion="orch22"; shift ;;
139        "-orch4")      orchversion="orch4";  shift ;;
140        "-orchdriver") orchdriver="-driver";  shift ;;
141        "-chimie")     optchimie=$2; shift ; shift;;
142        *)             echo "unknown option "$1" , exiting..." ; exit
143    esac
144done
145
146
147# Define which sub-configuration to compile. By default all extracted source components are compiled.
148source define_config.sh
149
150echo "Following options are set in current compiling:" >> $outfile
151echo "   regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile 
152echo "   resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile 
153echo "   optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile 
154echo "   full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile 
155echo "   compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile
156echo >> $outfile
157### Verification of argument
158# Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface.
159if [ $orchversion == orch22 ] ; then
160    argorch=orchidee2.1
161elif [ $orchversion == orch4 ] ; then
162    argorch=orchideetrunk
163else
164    echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now"
165fi
166
167### Read host dependent default values
168### These variables will not be changed if they were set as argument
169###./host.sh $host
170# Later : Following lines should be set in host.sh file
171# begin host.sh
172if [ $fcm_arch == default ] ; then
173    # Find out current host and source specific paths and commands for the host
174    case $( hostname -s ) in
175        jean-zay*)
176            if [[ $( hostname -s ) != *"pp"* ]] ; then
177                echo "Warning! You MUST compile on jean-zay-pp."
178                echo "EXIT"
179                exit
180            else
181                fcm_arch=X64_JEANZAY
182            fi ;;
183        irene170|irene171|irene190|irene191|irene192|irene193)
184            fcm_arch=X64_IRENE;;
185        irene172|irene173|irene194|irene195)
186            fcm_arch=X64_IRENE-AMD;;
187        asterix*|obelix*)
188            fcm_arch=ifort_LSCE
189            if [ "${parallel}" == "mpi_omp" ] ; then
190                echo "Warning!! Currently at Obelix hybrid mode is not possible."
191                echo "          Option -parallel mpi_omp is now changed to -parallel mpi"
192                echo ""
193                parallel=mpi
194            else
195                echo "You used -parallel" $parallel
196            fi ;;
197        spirit*)
198            fcm_arch=ifort_MESOIPSL;;
199        ciclad*|climserv*|loholt*|camelot*)
200            fcm_arch=ifort_CICLAD;;
201        *)
202            echo Current host is not known. You must use option -arch to specify which architecuture files to use.
203            echo Exit now.
204            exit
205    esac
206fi
207
208# Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch.
209# The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement.
210if [ -f ARCH/arch-${fcm_arch}.env ] ; then
211    echo >> $outfile
212    echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components."
213    echo "Note that this new environement might be kept after compilation."
214    echo "If this is the case, source again your personal environment after compilation."
215    echo " Personal module list before sourcing of ARCH/arch.env file:"    >> $outfile 
216    module list   >> $outfile 2>&1
217    svn_version=$(module list -t | grep subversion)
218       
219    # Make a link to this file, to be used also in config.card
220    rm -f ARCH/arch.env
221    ln -s arch-${fcm_arch}.env ARCH/arch.env
222
223    # Source the file
224    source ARCH/arch.env   >> $outfile 2>&1
225    if [ X$svn_version != X ] ; then
226        module load ${svn_version}
227    fi
228    echo >> $outfile
229    echo " New module list after sourcing of ARCH/arch.env file:"    >> $outfile 
230    module list   >> $outfile 2>&1
231fi
232
233
234#### Clean if full_orch
235# If full recompilation of ORCHIDEE then first clean modipsl/lib folder
236if [ X${full_orch} == X"-full" ] ; then
237   rm -f $modipsl/lib/*
238fi
239
240#### 2 Do the compilation
241## 2.1 Compile ioipsl
242cd $modipsl/modeles/IOIPSL
243echo; echo "NOW COMPILE IOIPSL"
244echo >> $outfile ; echo " NOW COMPILE IOIPSL"   >> $outfile 
245
246echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 
247     ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag   >> $outfile 2>&1
248# Test if compiling succeded
249if [[ $? != 0 ]] ; then
250    echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP"
251    exit
252fi
253
254if [ $compoasis == y ] ; then
255## 2.2 Compile oasis3-mct
256if [ $full_oasis == y ] ; then
257    rm -rf $modipsl/oasis3-mct/BLD
258fi
259cd $modipsl/oasis3-mct/util/make_dir
260echo; echo "NOW COMPILE OASIS3-MCT"
261echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT"   >> $outfile
262cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc
263
264echo make -f TopMakefileOasis3 >> $outfile
265     make -f TopMakefileOasis3 >> $outfile 2>&1
266if [[ $? != 0 ]] ; then
267    echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP"
268    exit
269fi
270 
271
272else
273echo ; echo No compilation of OASIS
274fi
275
276## 2.3 Compile xios
277cd $modipsl/modeles/XIOS
278echo; echo "NOW COMPILE XIOS"
279echo >> $outfile ; echo " NOW COMPILE XIOS"   >> $outfile 
280if [ $compoasis == y ] ; then
281argoasis="--use_oasis oasis3_mct "
282else
283argoasis=" "
284fi
285echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 
286     ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios   >> $outfile 2>&1
287# Test if compiling succeded
288if [[ $? != 0 ]] ; then
289    echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP"
290    exit
291fi
292# Move executables to modipsl/bin
293if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then
294    mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe
295else
296    echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP"
297    exit
298fi
299
300
301## 2.4 Compile ORCHIDEE
302# Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE.
303# This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie.
304cd $modipsl/modeles
305rm -f ORCHIDEE
306if [ $orchversion == orch22 ] ; then
307    ln -s ORCHIDEE_2_2 ORCHIDEE
308    cd $modipsl/modeles/ORCHIDEE_2_2
309    echo; echo "NOW COMPILE ORCHIDEE_2_2"
310    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2"   >> $outfile 
311else
312    ln -s ORCHIDEE_4 ORCHIDEE
313    cd $modipsl/modeles/ORCHIDEE_4
314    echo; echo "NOW COMPILE ORCHIDEE_4 (trunk)"
315    echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_4 (trunk)"   >> $outfile 
316fi
317
318# Check if the compilation of ORCHIDEE was previsouly interupted prematured.
319# In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm
320# to ask question and wait for interactivly answer from the user.
321if [ -f build/fcm.bld.lock ] ; then
322    echo >> $outfile
323    echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. "   >> $outfile
324    echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
325    echo "           The file will now be removed. "   >> $outfile
326    echo >> $outfile
327    rm -f build/fcm.bld.lock
328fi
329
330echo    ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 
331        ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch $orchdriver >> $outfile 2>&1
332# Test if compiling finished
333if [[ $? != 0 ]] ; then
334    echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP"
335    exit
336fi
337
338# Rename exetubles for ORCHIDEE offline driver with suffix version
339cd $modipsl/bin
340if [ -f orchideedriver ] ; then
341    mv orchideedriver orchideedriver.${orchversion}_$optmode
342    ln -sf orchideedriver.${orchversion}_$optmode orchideedriver_$optmode
343fi
344if [ -f orchidee_ol ] ; then
345    mv orchidee_ol orchidee_ol.${orchversion}_$optmode
346    ln -sf orchidee_ol.${orchversion}_$optmode orchidee_ol_$optmode
347fi
348
349## 2.5 Compile NEMO
350if [ $compnemo == y ] ; then
351    nemo_root=$modipsl/modeles/NEMO
352    cfg_ref=ORCA2_ICE_PISCES
353    cfg_wrk=ORCA_ICE_TRC
354    addkeys="key_oasis3 key_top key_si3 key_isf"
355    delkeys=""
356   
357    if [ ${nemotop} == n ] ; then
358        cfg_wrk=ORCA_ICE
359        delkeys="key_top"
360    fi
361   
362    if [ ${nemotop} == n ] ; then
363        echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"
364        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP"   >> $outfile
365    else
366        echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"
367        echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP"   >> $outfile
368    fi
369   
370    echo >> $outfile ; echo cd $nemo_root  >> $outfile
371    echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.   >> $outfile
372    echo >> $outfile
373   
374    cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/.
375   
376    # creation of config
377    echo >> $outfile ; echo cd $nemo_root  >> $outfile
378    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys"  del_key "$delkeys"   >> $outfile
379    echo >> $outfile
380    cd $nemo_root
381    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0  add_key "$addkeys"  del_key "$delkeys"  >> $outfile 2>&1
382   
383   
384    # Copy of specfic source files
385    echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.   >> $outfile
386    echo >> $outfile
387    cp $mysrc_path/NEMO/*.*90  $nemo_root/cfgs/$cfg_wrk/MY_SRC/.
388   
389   
390    if [ $full_nemo == y ] ; then
391        # To make a full compilation, first make a clean to remove all files produced during previous compilation
392        echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean   >> $outfile
393        echo >> $outfile
394        ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean  >> $outfile 2>&1
395    fi
396    echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile
397    echo >> $outfile
398    ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8  >> $outfile 2>&1
399   
400    echo >> $outfile
401    echo "Move nemo executable to modipsl/bin" >> $outfile
402    echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin   >> $outfile
403    ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin  >> $outfile
404    echo >> $outfile
405   
406    if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then
407        mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe
408    else
409        echo "ERROR nemo.exe executable does not exist."
410        echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP"
411        exit
412    fi
413   
414else
415    echo ; echo No compilation of NEMO
416fi
417
418##2.6  Compile INCA
419if [ $compinca == y ] ; then
420    cd $modipsl/modeles/INCA
421   
422    echo; echo "NOW COMPILE INCA ${optchimie}"
423    echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}"   >> $outfile 
424   
425    echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch}  -arch_path $arch_path $full_inca  >> $outfile
426    ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp  -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1
427   
428    # Test if compiling finished
429    if [[ $? != 0 ]] ; then
430        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
431        echo "ALL INFORMATION IN FILE $outfile"
432        exit
433    fi
434   
435    echo "Move inca.dat modipsl/bin"
436    if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ;  then 
437        mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ;
438    else
439        echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP"
440        echo "ALL INFORMATION IN FILE $outfile"
441        exit   
442    fi
443   
444    echo "Move tracer.def to  modipsl/bin"
445    if [[ -f $modipsl/modeles/INCA/tracer.def ]] ;  then
446        mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ;
447    fi
448   
449else
450    echo ; echo No compilation of INCA
451fi
452
453## 2.7 Compile LMDZ
454cd $modipsl/modeles/LMDZ
455
456
457# Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 for LMDZ 4515
458# To be remove for newer versions of LMDZ
459cp $mysrc_path/LMDZ/phylmd/*.*90  libf/phylmd/.
460cp $mysrc_path/LMDZ/dyn3d_common/*.*90  libf/dyn3d_common/.
461
462
463# Compile LMDZ as library to couple to DYNAMICO
464if [ $compdyna == y ] ; then
465    echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"
466    echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO"   >> $outfile 
467   
468   
469    # Check if the compilation of LMDZ was previsouly interupted prematured.
470    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
471    # to ask question and wait for interactivly answer from the user.
472    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
473        echo >> $outfile
474        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
475        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
476        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
477        echo >> $outfile
478        rm -f libf/grid/dimensions.h
479        rm -f .lock
480    fi
481   
482    # Need to define the proper option for radiative code compilation. By default, we use rrtm
483    case $rad in
484        oldrad) opt_rad="" ;;
485        rrtm)    opt_rad="-rad rrtm" ;;
486        ecrad)  opt_rad="-rad ecrad" ;;
487        *) echo Only oldrad rrtm ecrad for rad option ; exit
488    esac
489   
490   
491    if [ $compinca == y ] ; then
492        arginca="-chimie INCA "
493    else
494        arginca=" "
495    fi
496   
497    if [ $compoasis == y ] ; then
498        argoasis="-c OMCT "
499    else
500        argoasis=" "
501    fi
502
503    echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 
504    ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca  -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz    >> $outfile 2>&1
505   
506   
507    # Test if compiling finished
508    if [[ $? != 0 ]] ; then
509        echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP"
510        exit
511    fi
512fi
513
514
515## 2.8 Compile DYNAMICO
516if [ $compdyna == y ] ; then
517    cd $modipsl/modeles/DYNAMICO
518    echo; echo "NOW COMPILE DYNAMICO "
519    echo >> $outfile ; echo " NOW COMPILE DYNAMICO"   >> $outfile 
520   
521    if [ $compoasis == y ] ; then
522        argoasis="-with_oasis "
523    else
524        argoasis=" "
525    fi
526    if [ $compinca == y ] ; then
527        arginca="-with_inca "
528    else
529        arginca=" "
530    fi
531   
532   
533    echo ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 
534    ./make_icosa -$optmode -with_fcm1 -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna    >> $outfile 2>&1
535    # Test if compiling finished
536    if [[ $? != 0 ]] ; then
537        echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP"
538        exit
539    fi
540fi
541   
542## 2.9 Compile interface ICOSA_LMDZ
543if [ $compdyna == y ] ; then
544    cd $modipsl/modeles/ICOSA_LMDZ
545    echo; echo "NOW COMPILE ICOSA_LMDZ "
546    echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ"   >> $outfile 
547   
548    echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 
549    ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna    >> $outfile 2>&1
550    # Test if compiling finished
551    if [[ $? != 0 ]] ; then
552        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP"
553        exit
554    fi
555    # Move executables to modipsl/bin
556    if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then
557        if [ $compinca == y ] ; then
558            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe
559            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
560            cd  $modipsl/bin
561            rm -f icosa_lmdz_${orchversion}_${optmode}.exe
562            ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe
563        else
564            mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe
565        fi
566    else
567        echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP"
568        exit
569    fi
570fi
571
572
573## 2.10 Compile LMDZ for regular latlon configuration
574if [ $regular_latlon = y ] ; then
575
576    cd $modipsl/modeles/LMDZ
577    # Compile LMDZ regular lat-lon exectuable
578    echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"
579    echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}"   >> $outfile 
580    # Check if the compilation of LMDZ was previsouly interupted prematured.
581    # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm
582    # to ask question and wait for interactivly answer from the user.
583    if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then
584        echo >> $outfile
585        echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. "   >> $outfile
586        echo "           This means that the compilation is either currently on going in another terminal was previous interupted before the end."   >> $outfile
587        echo "           The files dimension.h and .lock will now be removed. "   >> $outfile
588        echo >> $outfile
589        rm -f libf/grid/dimensions.h
590        rm -f .lock
591    fi
592
593    # Need to define the proper option for radiative code compilation. By default, we use rrtm
594    case $rad in
595        oldrad) opt_rad="" ;;
596        rrtm)    opt_rad="-rad rrtm" ;;
597        ecrad)  opt_rad="-rad ecrad" ;;
598        *) echo Only oldrad rrtm ecrad for rad option ; exit
599    esac
600   
601    if [ $compinca == y ] ; then
602        arginca="-chimie INCA"
603    else
604        arginca=""
605    fi
606   
607    if [ $compoasis == y ] ; then
608        argoasis="-c OMCT"
609    else
610        argoasis=""
611    fi
612    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 
613         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca  -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm    >> $outfile 2>&1
614    # Test if compiling finished
615    if [[ $? != 0 ]] ; then
616        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
617        exit
618    fi
619
620    # Find executable suffix
621    suffix=_${resol_atm}_phylmd
622    suffix=${suffix}_${rad} 
623    if [ $parallel == seq ] || [ $parallel == none ] ; then
624        suffix=${suffix}_seq_orch_inca.e
625    else
626        if [ $compoasis == y ] ; then
627            suffix=${suffix}_para_mem_orch_couple
628        else
629            suffix=${suffix}_para_mem_orch
630        fi
631        if [ $compinca == y ] ; then
632            suffix=${suffix}_inca.e
633        else
634            suffix=${suffix}.e
635        fi
636    fi
637    echo gcm suffix = $suffix
638   
639    # Move executables to modipsl/bin folder
640    echo "Move gcm.e executable to modipsl/bin"
641    if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ;  then
642        if [ $compinca == y ] ; then
643            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e
644            # Create link to be use by IPSLCM and LMDZOR without any change in the executable name
645            cd $modipsl/bin
646            rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e
647            ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e
648        else
649            mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e
650        fi
651    else
652        echo "ERROR gcm${suffix} executable does not exist." 
653        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
654        exit
655    fi   
656
657    # Find executable suffix
658    suffix=_${resol_atm}_phylmd
659    suffix=${suffix}_${rad} 
660    if [ $parallel == seq ] || [ $parallel == none ] ; then
661        suffix=${suffix}_seq_orch.e
662    else
663        if [ $compoasis == y ] ; then
664            suffix=${suffix}_para_mem_orch_couple.e
665        else
666            suffix=${suffix}_para_mem_orch.e
667        fi
668    fi
669    echo ce0l suffix = $suffix
670
671    # Compile ce0l initialization program for LMDZ regular lat-lon exectuable
672    cd $modipsl/modeles/LMDZ
673    echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"
674    echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}"   >> $outfile 
675
676    echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 
677         ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l    >> $outfile 2>&1
678    # Test if compiling finished
679    if [[ $? != 0 ]] ; then
680        echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP"
681        exit
682    fi
683   
684 
685    # Move executable ce0l to modipsl/bin folder
686    echo "Move ce0l executable to modipsl/bin"
687    if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ;  then
688        mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e
689    else
690        echo "ERROR ce0l${suffix} executable does not exist." 
691        echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP"
692        exit
693    fi
694fi
695
696echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile
697echo ls -lrt modipsl/bin >> $outfile
698ls -lrt $modipsl/bin >> $outfile
699
700echo; echo "ALL COMPILING FINISHED" ; echo
701echo "Executables are found in modipsl/bin"
702echo "Check that executable names correspond with the name set in config.card before launching the job"
703echo ls -lrt modipsl/bin
704ls -lrt $modipsl/bin
705
706date
707
708exit
709
710
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