| 1 | #!/bin/bash |
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| 2 | # Default options |
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| 3 | # |
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| 4 | # |
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| 5 | # |
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| 6 | date |
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| 7 | #### 1 Set up the compiling options |
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| 8 | #### Define some directories |
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| 9 | submitdir=$( pwd ) |
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| 10 | modipsl=$submitdir/../.. |
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| 11 | arch_path=$submitdir/ARCH |
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| 12 | mysrc_path=$submitdir/SOURCES |
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| 13 | export ROOT=$modipsl/modeles/IOIPSL |
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| 14 | #### Set default options |
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| 15 | # Activate compilation of LMDZ for regular latlon grid without DYNAMICO |
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| 16 | regular_latlon=y |
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| 17 | # Atmospheric resolution for regular grid for LMDZ/ORCHIDEE, if regular_latlon=y |
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| 18 | resol_atm=144x142x79 |
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| 19 | # Coupled with ocean biogeochemistry (y/n) |
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| 20 | nemotop=y |
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| 21 | # Optimization mode |
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| 22 | # optmode=prod/dev/debug |
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| 23 | optmode=prod |
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| 24 | # fcm_arch |
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| 25 | fcm_arch=default |
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| 26 | # Default values to be overritten |
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| 27 | parallel=mpi_omp |
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| 28 | export fcm_arch parallel xios |
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| 29 | full_flag="" |
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| 30 | full_nemo=n |
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| 31 | full_inca="" |
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| 32 | full_xios="" |
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| 33 | full_lmdz="" |
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| 34 | full_orch="" |
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| 35 | full_dyna="" |
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| 36 | full_oasis=n |
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| 37 | # choose radiative code compilation option |
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| 38 | rad=rrtm |
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| 39 | opt_rad="" |
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| 40 | #choose chemistry inca configuration |
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| 41 | optchimie=GES |
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| 42 | |
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| 43 | # subconfig : which sub-configuration to compile. By default, the full extracted configuration is compiled. |
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| 44 | subconfig=default |
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| 45 | |
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| 46 | # orchversion tells if ORCHIDEE_2_2 or ORCHIDEE_4 is compiled. This is used as argument and also in the suffix of the executables. |
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| 47 | orchversion=orch22 |
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| 48 | # orchdriver : Permet to compile the ORCHIDEE offline drivers. This option is activated by setting -orchdriver as argument. |
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| 49 | # Drivers are now compiled by default |
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| 50 | orchdriver="-driver" |
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| 51 | |
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| 52 | # Default netcdf_lib is used for XIOS but can be change by argument |
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| 53 | netcdf_lib="" |
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| 54 | |
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| 55 | # Output text file for compilation of each component |
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| 56 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
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| 57 | outfile=$submitdir/out_compile_ipslcm7.$datestr |
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| 58 | echo > $outfile |
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| 59 | echo; echo "Text output from compilation will be stored in file out_compile_ipslcm7.$datestr"; echo |
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| 60 | |
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| 61 | |
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| 62 | rm -f out_compile_ipslcm7 |
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| 63 | ln -s ${outfile} out_compile_ipslcm7 |
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| 64 | |
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| 65 | |
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| 66 | #### Read arguments |
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| 67 | # Loop over all arguments to modify default set up |
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| 68 | while (($# > 0)) ; do |
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| 69 | case $1 in |
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| 70 | "-h"|"-help") cat <<end_help |
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| 71 | ######################################################################## |
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| 72 | # Usage of the script compile_ipslcm7.sh |
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| 73 | # |
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| 74 | ######################################################################## |
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| 75 | |
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| 76 | ./compile_ipslcm7.sh [Options] |
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| 77 | |
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| 78 | Description of all options: |
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| 79 | |
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| 80 | [-full] Full recompilation of all components. This option can be added to all other options. |
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| 81 | [-cleannemo] Full recompilation of NEMO component only. |
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| 82 | [-regular_latlon yes/no] Activate or deactivate compilation of LMDZ dynamics for regular latlon grid. |
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| 83 | Default resol_atm size is used. This option is set in addition to the compilation of the icosahedric grid. |
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| 84 | [-resol_atm XXXxYYYxZZ] Define which regular grid to compile. A default grid is set if this option is not used. |
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| 85 | [-debug / -dev / -prod] Level of optimization. One of these can be added to all other compile options. Default: -prod. |
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| 86 | [-subconfig X] Set this option if you want to compile a sub-configuration. X can be one of following sub-configurations : |
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| 87 | ICOLMDZORINCA, ICOLMDZOR, LMDZORINCA, LMDZOR, IPSLCM-reg or IPSLCM |
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| 88 | By default, all available components are compiled. |
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| 89 | [-orch4 / -orch22] Choice of ORCHIDEE version. The source code are found in modeles/ORCHIDEE_4 or modeles/ORCHIDEE_2_2 |
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| 90 | and a link will be set to the choosen model version. Default version is currently ORCHIDEE_2_2 (-orch22). |
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| 91 | [-orchdriver] Activate compilation of orchidee offline drivers |
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| 92 | |
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| 93 | Example 1: Default compilation of IPSLCM7 |
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| 94 | ./compile_ipslcm7.sh |
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| 95 | |
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| 96 | Example 2: Default compilation in debug mode |
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| 97 | ./compile_ipslcm7.sh -debug |
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| 98 | |
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| 99 | Example 3: Default compilation with full recompilation of all components. No clean is needed. |
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| 100 | ./compile_ipslcm7.sh -full |
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| 101 | |
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| 102 | Example 4: Compilation in addition of LMDZ in regular lat-lon for a specific resolution : |
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| 103 | ./compile_ipslcm7.sh -resol_atm 144x142x95 |
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| 104 | |
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| 105 | Example 5: Compilation without regular grid (only icosaedric grid) |
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| 106 | ./compile_ipslcm7.sh -regular_latlon no |
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| 107 | |
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| 108 | Example 5: Compilation of ORCHIDEE_4 version |
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| 109 | ./compile_ipslcm7.sh -orch4 |
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| 110 | |
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| 111 | Example 6: compilation of a specific chemistry for INCA (default is GES) |
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| 112 | ./compile_ipslcm7.sh -chimie NMHC_AER_S |
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| 113 | |
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| 114 | Example 7: Compilation of sub-configuration LMDZOR : |
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| 115 | ./compile_ipslcm7.sh -subconfig LMDZOR |
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| 116 | |
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| 117 | end_help |
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| 118 | exit;; |
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| 119 | |
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| 120 | "-parallel") parallel=$2 ; shift ; shift ;; |
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| 121 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
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| 122 | "-debug") optmode=debug ; shift ;; |
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| 123 | "-dev") optmode=dev ; shift ;; |
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| 124 | "-prod") optmode=prod ; shift ;; |
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| 125 | "-regular_latlon") regular_latlon=$2 ; shift ; shift ;; |
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| 126 | "-resol_atm") regular_latlon=y ; resol_atm=$2 ; shift ; shift ;; |
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| 127 | "-subconfig") subconfig=$2 ; shift ; shift ;; |
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| 128 | "-full") full_flag="-full"; full_nemo=y ; full_xios="--full" ; full_lmdz="-full" ; full_orch="-full" ; full_oasis=y ; full_inca="-clean" ; full_dyna="-full" ; shift ;; |
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| 129 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
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| 130 | "-full_lmdz") full_lmdz="-full" ; shift ;; |
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| 131 | "-full_orch") full_orch="-full" ; shift ;; |
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| 132 | "-full_nemo") full_nemo=y ; shift ;; |
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| 133 | "-full_inca") full_inca="-clean"; shift ;; |
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| 134 | "-full_dyna") full_dyna="-full" ; shift ;; |
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| 135 | "-full_oasis") full_oasis=y ; shift ;; |
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| 136 | "-cleannemo") full_nemo=y ; shift ;; |
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| 137 | "-rad") rad=$2; shift ; shift ;; |
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| 138 | "-orch22") orchversion="orch22"; shift ;; |
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| 139 | "-orch4") orchversion="orch4"; shift ;; |
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| 140 | "-orchdriver") orchdriver="-driver"; shift ;; |
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| 141 | "-chimie") optchimie=$2; shift ; shift;; |
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| 142 | *) echo "unknown option "$1" , exiting..." ; exit |
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| 143 | esac |
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| 144 | done |
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| 145 | |
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| 146 | |
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| 147 | # Define which sub-configuration to compile. By default all extracted source components are compiled. |
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| 148 | source define_config.sh |
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| 149 | |
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| 150 | echo "Following options are set in current compiling:" >> $outfile |
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| 151 | echo " regular_latlon=$regular_latlon (if yes, then resol_atm=${resol_atm})" >> $outfile |
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| 152 | echo " resol_atm=${resol_atm}, nemotop=${nemotop}" >> $outfile |
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| 153 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
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| 154 | echo " full_flag=$full_flag, full_xios=$full_xios, full_lmdz=$full_lmdz, full_orch=$full_orch, full_nemo=$full_nemo, full_dyna=$full_dyna, full_oasis=$full_oasis" >> $outfile |
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| 155 | echo " compinca=$compinca compnemo=$compnemo compoasis=$compoasis compdyna=$compdyna complmdz=y comporch=y compxios=y" >> $outfile |
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| 156 | echo >> $outfile |
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| 157 | ### Verification of argument |
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| 158 | # Set argorch depeinding on the version of ORCHIDEE. This is argument needed for the compilation of LMDZ to consider coherent interface. |
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| 159 | if [ $orchversion == orch22 ] ; then |
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| 160 | argorch=orchidee2.1 |
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| 161 | elif [ $orchversion == orch4 ] ; then |
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| 162 | argorch=orchideetrunk |
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| 163 | else |
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| 164 | echo "ERROR in version of ORCHIDEE. It is only possible to have orch22 or orch4 for now" |
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| 165 | fi |
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| 166 | |
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| 167 | ### Read host dependent default values |
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| 168 | ### These variables will not be changed if they were set as argument |
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| 169 | ###./host.sh $host |
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| 170 | # Later : Following lines should be set in host.sh file |
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| 171 | # begin host.sh |
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| 172 | if [ $fcm_arch == default ] ; then |
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| 173 | # Find out current host and source specific paths and commands for the host |
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| 174 | case $( hostname -s ) in |
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| 175 | jean-zay*) |
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| 176 | if [[ $( hostname -s ) != *"pp"* ]] ; then |
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| 177 | echo "Warning! You MUST compile on jean-zay-pp." |
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| 178 | echo "EXIT" |
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| 179 | exit |
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| 180 | else |
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| 181 | fcm_arch=X64_JEANZAY |
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| 182 | fi ;; |
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| 183 | irene170|irene171|irene190|irene191|irene192|irene193) |
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| 184 | fcm_arch=X64_IRENE;; |
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| 185 | irene172|irene173|irene194|irene195) |
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| 186 | fcm_arch=X64_IRENE-AMD;; |
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| 187 | asterix*|obelix*) |
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| 188 | fcm_arch=ifort_LSCE |
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| 189 | if [ "${parallel}" == "mpi_omp" ] ; then |
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| 190 | echo "Warning!! Currently at Obelix hybrid mode is not possible." |
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| 191 | echo " Option -parallel mpi_omp is now changed to -parallel mpi" |
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| 192 | echo "" |
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| 193 | parallel=mpi |
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| 194 | else |
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| 195 | echo "You used -parallel" $parallel |
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| 196 | fi ;; |
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| 197 | spirit*) |
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| 198 | fcm_arch=ifort_MESOIPSL;; |
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| 199 | ciclad*|climserv*|loholt*|camelot*) |
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| 200 | fcm_arch=ifort_CICLAD;; |
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| 201 | *) |
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| 202 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
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| 203 | echo Exit now. |
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| 204 | exit |
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| 205 | esac |
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| 206 | fi |
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| 207 | |
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| 208 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
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| 209 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
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| 210 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
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| 211 | echo >> $outfile |
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| 212 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
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| 213 | echo "Note that this new environement might be kept after compilation." |
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| 214 | echo "If this is the case, source again your personal environment after compilation." |
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| 215 | echo " Personal module list before sourcing of ARCH/arch.env file:" >> $outfile |
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| 216 | module list >> $outfile 2>&1 |
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| 217 | svn_version=$(module -t list | grep subversion) |
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| 218 | |
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| 219 | # Make a link to this file, to be used also in config.card |
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| 220 | rm -f ARCH/arch.env |
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| 221 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
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| 222 | |
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| 223 | # Source the file |
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| 224 | source ARCH/arch.env >> $outfile 2>&1 |
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| 225 | if [ X$svn_version != X ] ; then |
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| 226 | module load ${svn_version} |
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| 227 | fi |
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| 228 | echo >> $outfile |
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| 229 | echo " New module list after sourcing of ARCH/arch.env file:" >> $outfile |
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| 230 | module list >> $outfile 2>&1 |
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| 231 | fi |
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| 232 | |
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| 233 | |
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| 234 | #### Clean if full_orch |
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| 235 | # If full recompilation of ORCHIDEE then first clean modipsl/lib folder |
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| 236 | if [ X${full_orch} == X"-full" ] ; then |
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| 237 | rm -f $modipsl/lib/* |
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| 238 | fi |
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| 239 | |
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| 240 | #### 2 Do the compilation |
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| 241 | ## 2.1 Compile ioipsl |
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| 242 | cd $modipsl/modeles/IOIPSL |
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| 243 | echo; echo "NOW COMPILE IOIPSL" |
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| 244 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
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| 245 | |
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| 246 | echo ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
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| 247 | ./makeioipsl_fcm -$optmode -parallel -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
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| 248 | # Test if compiling succeded |
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| 249 | if [[ $? != 0 ]] ; then |
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| 250 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
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| 251 | exit |
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| 252 | fi |
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| 253 | |
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| 254 | if [ $compoasis == y ] ; then |
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| 255 | ## 2.2 Compile oasis3-mct |
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| 256 | if [ $full_oasis == y ] ; then |
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| 257 | rm -rf $modipsl/oasis3-mct/BLD |
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| 258 | fi |
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| 259 | cd $modipsl/oasis3-mct/util/make_dir |
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| 260 | echo; echo "NOW COMPILE OASIS3-MCT" |
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| 261 | echo >> $outfile ; echo " NOW COMPILE OASIS3-MCT" >> $outfile |
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| 262 | cp $mysrc_path/OASIS3-MCT/make_${fcm_arch} make.inc |
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| 263 | |
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| 264 | echo make -f TopMakefileOasis3 >> $outfile |
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| 265 | make -f TopMakefileOasis3 >> $outfile 2>&1 |
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| 266 | if [[ $? != 0 ]] ; then |
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| 267 | echo "THERE IS A PROBLEM IN OASIS COMPILATION - STOP" |
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| 268 | exit |
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| 269 | fi |
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| 270 | |
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| 271 | |
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| 272 | else |
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| 273 | echo ; echo No compilation of OASIS |
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| 274 | fi |
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| 275 | |
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| 276 | ## 2.3 Compile xios |
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| 277 | cd $modipsl/modeles/XIOS |
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| 278 | echo; echo "NOW COMPILE XIOS" |
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| 279 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
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| 280 | if [ $compoasis == y ] ; then |
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| 281 | argoasis="--use_oasis oasis3_mct " |
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| 282 | else |
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| 283 | argoasis=" " |
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| 284 | fi |
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| 285 | echo ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
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| 286 | ./make_xios $argoasis --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
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| 287 | # Test if compiling succeded |
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| 288 | if [[ $? != 0 ]] ; then |
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| 289 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
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| 290 | exit |
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| 291 | fi |
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| 292 | # Move executables to modipsl/bin |
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| 293 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
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| 294 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
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| 295 | else |
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| 296 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
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| 297 | exit |
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| 298 | fi |
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| 299 | |
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| 300 | |
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| 301 | ## 2.4 Compile ORCHIDEE |
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| 302 | # Choose ORCHIDEE version to compile and create a link to generic folder name ORCHIDEE. |
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| 303 | # This link is needed for the compilation of ICOSA_LMDZ for it to find the orchidee librarie. |
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| 304 | cd $modipsl/modeles |
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| 305 | rm -f ORCHIDEE |
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| 306 | if [ $orchversion == orch22 ] ; then |
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| 307 | ln -s ORCHIDEE_2_2 ORCHIDEE |
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| 308 | cd $modipsl/modeles/ORCHIDEE_2_2 |
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| 309 | echo; echo "NOW COMPILE ORCHIDEE_2_2" |
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| 310 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_2_2" >> $outfile |
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| 311 | else |
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| 312 | ln -s ORCHIDEE_4 ORCHIDEE |
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| 313 | cd $modipsl/modeles/ORCHIDEE_4 |
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| 314 | echo; echo "NOW COMPILE ORCHIDEE_4 (trunk)" |
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| 315 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE_4 (trunk)" >> $outfile |
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| 316 | fi |
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| 317 | |
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| 318 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
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| 319 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
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| 320 | # to ask question and wait for interactivly answer from the user. |
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| 321 | if [ -f build/fcm.bld.lock ] ; then |
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| 322 | echo >> $outfile |
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| 323 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
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| 324 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
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| 325 | echo " The file will now be removed. " >> $outfile |
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| 326 | echo >> $outfile |
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| 327 | rm -f build/fcm.bld.lock |
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| 328 | fi |
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| 329 | |
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| 330 | if [ $compoasis == y ] ; then |
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| 331 | # For this case, XIOS library needs to be linked with OASIS library |
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| 332 | argoasis="-linkwithoasis" |
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| 333 | else |
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| 334 | argoasis="" |
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| 335 | fi |
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| 336 | |
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| 337 | echo ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path ${argoasis} $full_orch $orchdriver >> $outfile |
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| 338 | ./makeorchidee_fcm -j 8 -xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path ${argoasis} $full_orch $orchdriver >> $outfile 2>&1 |
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| 339 | # Test if compiling finished |
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| 340 | if [[ $? != 0 ]] ; then |
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| 341 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
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| 342 | exit |
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| 343 | fi |
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| 344 | |
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| 345 | # Rename exetubles for ORCHIDEE offline driver with suffix version |
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| 346 | cd $modipsl/bin |
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| 347 | if [ -f orchideedriver ] ; then |
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| 348 | mv orchideedriver orchideedriver.${orchversion}_$optmode |
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| 349 | ln -sf orchideedriver.${orchversion}_$optmode orchideedriver_$optmode |
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| 350 | fi |
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| 351 | if [ -f orchidee_ol ] ; then |
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| 352 | mv orchidee_ol orchidee_ol.${orchversion}_$optmode |
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| 353 | ln -sf orchidee_ol.${orchversion}_$optmode orchidee_ol_$optmode |
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| 354 | fi |
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| 355 | |
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| 356 | ## 2.5 Compile NEMO |
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| 357 | if [ $compnemo == y ] ; then |
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| 358 | nemo_root=$modipsl/modeles/NEMO |
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| 359 | cfg_ref=ORCA2_ICE_PISCES |
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| 360 | cfg_wrk=ORCA_ICE_TRC |
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| 361 | addkeys="key_oasis3 key_top key_si3 key_isf" |
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| 362 | delkeys="" |
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| 363 | |
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| 364 | if [ ${nemotop} == n ] ; then |
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| 365 | cfg_wrk=ORCA_ICE |
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| 366 | delkeys="key_top" |
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| 367 | fi |
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| 368 | |
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| 369 | if [ ${nemotop} == n ] ; then |
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| 370 | echo; echo "NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" |
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| 371 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 without passive tracer model TOP" >> $outfile |
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| 372 | else |
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| 373 | echo; echo "NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" |
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| 374 | echo >> $outfile ; echo " NOW COMPILE NEMO with ice model SI3 and passive tracer model TOP" >> $outfile |
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| 375 | fi |
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| 376 | |
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| 377 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
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| 378 | echo >> $outfile ; echo cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. >> $outfile |
|---|
| 379 | echo >> $outfile |
|---|
| 380 | |
|---|
| 381 | cd $nemo_root ; cp $mysrc_path/NEMO/arch-${fcm_arch}.fcm arch/CNRS/. |
|---|
| 382 | |
|---|
| 383 | # creation of config |
|---|
| 384 | echo >> $outfile ; echo cd $nemo_root >> $outfile |
|---|
| 385 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile |
|---|
| 386 | echo >> $outfile |
|---|
| 387 | cd $nemo_root |
|---|
| 388 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j0 add_key "$addkeys" del_key "$delkeys" >> $outfile 2>&1 |
|---|
| 389 | |
|---|
| 390 | |
|---|
| 391 | # Copy of specfic source files |
|---|
| 392 | echo >> $outfile ; echo cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. >> $outfile |
|---|
| 393 | echo >> $outfile |
|---|
| 394 | cp $mysrc_path/NEMO/*.*90 $nemo_root/cfgs/$cfg_wrk/MY_SRC/. |
|---|
| 395 | |
|---|
| 396 | |
|---|
| 397 | if [ $full_nemo == y ] ; then |
|---|
| 398 | # To make a full compilation, first make a clean to remove all files produced during previous compilation |
|---|
| 399 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile |
|---|
| 400 | echo >> $outfile |
|---|
| 401 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref clean >> $outfile 2>&1 |
|---|
| 402 | fi |
|---|
| 403 | echo ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile |
|---|
| 404 | echo >> $outfile |
|---|
| 405 | ./makenemo -m ${fcm_arch} -n $cfg_wrk -r $cfg_ref -j8 >> $outfile 2>&1 |
|---|
| 406 | |
|---|
| 407 | echo >> $outfile |
|---|
| 408 | echo "Move nemo executable to modipsl/bin" >> $outfile |
|---|
| 409 | echo ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 410 | ls -lrt $nemo_root/cfgs/$cfg_wrk/BLD/bin >> $outfile |
|---|
| 411 | echo >> $outfile |
|---|
| 412 | |
|---|
| 413 | if [ -f $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe ] ; then |
|---|
| 414 | mv $nemo_root/cfgs/$cfg_wrk/BLD/bin/nemo.exe $modipsl/bin/opa_${optmode}.exe |
|---|
| 415 | else |
|---|
| 416 | echo "ERROR nemo.exe executable does not exist." |
|---|
| 417 | echo "THERE IS A PROBLEM IN NEMO COMPILATION - STOP" |
|---|
| 418 | exit |
|---|
| 419 | fi |
|---|
| 420 | |
|---|
| 421 | else |
|---|
| 422 | echo ; echo No compilation of NEMO |
|---|
| 423 | fi |
|---|
| 424 | |
|---|
| 425 | ##2.6 Compile INCA |
|---|
| 426 | if [ $compinca == y ] ; then |
|---|
| 427 | cd $modipsl/modeles/INCA |
|---|
| 428 | |
|---|
| 429 | echo; echo "NOW COMPILE INCA ${optchimie}" |
|---|
| 430 | echo >> $outfile ; echo " NOW COMPILE INCA ${optchimie}" >> $outfile |
|---|
| 431 | |
|---|
| 432 | echo ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile |
|---|
| 433 | ./makeinca_fcm -chimie ${optchimie} -$optmode -xios -parallel mpi_omp -j 8 -arch ${fcm_arch} -arch_path $arch_path $full_inca >> $outfile 2>&1 |
|---|
| 434 | |
|---|
| 435 | # Test if compiling finished |
|---|
| 436 | if [[ $? != 0 ]] ; then |
|---|
| 437 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 438 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 439 | exit |
|---|
| 440 | fi |
|---|
| 441 | |
|---|
| 442 | echo "Move inca.dat modipsl/bin" |
|---|
| 443 | if [[ -f $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat ]] ; then |
|---|
| 444 | mv $modipsl/modeles/INCA/SIMULATIONS/${optchimie}/inca.dat $modipsl/bin/inca_${optchimie}.dat ; |
|---|
| 445 | else |
|---|
| 446 | echo "THERE IS A PROBLEM IN INCA COMPILATION - STOP" |
|---|
| 447 | echo "ALL INFORMATION IN FILE $outfile" |
|---|
| 448 | exit |
|---|
| 449 | fi |
|---|
| 450 | |
|---|
| 451 | echo "Move tracer.def to modipsl/bin" |
|---|
| 452 | if [[ -f $modipsl/modeles/INCA/tracer.def ]] ; then |
|---|
| 453 | mv $modipsl/modeles/INCA/tracer.def $modipsl/bin/tracer_${optchimie}.def ; |
|---|
| 454 | fi |
|---|
| 455 | |
|---|
| 456 | else |
|---|
| 457 | echo ; echo No compilation of INCA |
|---|
| 458 | fi |
|---|
| 459 | |
|---|
| 460 | ## 2.7 Compile LMDZ |
|---|
| 461 | cd $modipsl/modeles/LMDZ |
|---|
| 462 | |
|---|
| 463 | # Temporary use of SOURCES/LMDZ to handle modifications needed by IPSLCM7 for LMDZ 4876 |
|---|
| 464 | # To be removed for newer versions of LMDZ |
|---|
| 465 | ln -sf $mysrc_path/LMDZ/phylmd/*.*90 libf/phylmd/. |
|---|
| 466 | |
|---|
| 467 | # Compile LMDZ as library to couple to DYNAMICO |
|---|
| 468 | if [ $compdyna == y ] ; then |
|---|
| 469 | echo; echo "NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" |
|---|
| 470 | echo >> $outfile ; echo " NOW COMPILE LMDZ FOR COUPLING TO DYNAMICO" >> $outfile |
|---|
| 471 | |
|---|
| 472 | |
|---|
| 473 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 474 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 475 | # to ask question and wait for interactivly answer from the user. |
|---|
| 476 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 477 | echo >> $outfile |
|---|
| 478 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 479 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 480 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 481 | echo >> $outfile |
|---|
| 482 | rm -f libf/grid/dimensions.h |
|---|
| 483 | rm -f .lock |
|---|
| 484 | fi |
|---|
| 485 | |
|---|
| 486 | # Need to define the proper option for radiative code compilation. By default, we use rrtm |
|---|
| 487 | case $rad in |
|---|
| 488 | oldrad) opt_rad="" ;; |
|---|
| 489 | rrtm) opt_rad="-rad rrtm" ;; |
|---|
| 490 | ecrad) opt_rad="-rad ecrad" ;; |
|---|
| 491 | *) echo Only oldrad rrtm ecrad for rad option ; exit |
|---|
| 492 | esac |
|---|
| 493 | |
|---|
| 494 | |
|---|
| 495 | if [ $compinca == y ] ; then |
|---|
| 496 | arginca="-chimie INCA " |
|---|
| 497 | else |
|---|
| 498 | arginca=" " |
|---|
| 499 | fi |
|---|
| 500 | |
|---|
| 501 | if [ $compoasis == y ] ; then |
|---|
| 502 | argoasis="-c OMCT " |
|---|
| 503 | else |
|---|
| 504 | argoasis=" " |
|---|
| 505 | fi |
|---|
| 506 | |
|---|
| 507 | echo ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile |
|---|
| 508 | ./makelmdz_fcm -p lmd $argoasis $opt_rad -$optmode -mem -parallel $parallel -libphy -v $argorch $arginca -io xios -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz >> $outfile 2>&1 |
|---|
| 509 | |
|---|
| 510 | |
|---|
| 511 | # Test if compiling finished |
|---|
| 512 | if [[ $? != 0 ]] ; then |
|---|
| 513 | echo "THERE IS A PROBLEM IN LMDZ PHYSICS COMPILATION - STOP" |
|---|
| 514 | exit |
|---|
| 515 | fi |
|---|
| 516 | fi |
|---|
| 517 | |
|---|
| 518 | |
|---|
| 519 | ## 2.8 Compile DYNAMICO |
|---|
| 520 | if [ $compdyna == y ] ; then |
|---|
| 521 | cd $modipsl/modeles/DYNAMICO |
|---|
| 522 | echo; echo "NOW COMPILE DYNAMICO " |
|---|
| 523 | echo >> $outfile ; echo " NOW COMPILE DYNAMICO" >> $outfile |
|---|
| 524 | |
|---|
| 525 | if [ $compoasis == y ] ; then |
|---|
| 526 | argoasis="-with_oasis " |
|---|
| 527 | else |
|---|
| 528 | argoasis=" " |
|---|
| 529 | fi |
|---|
| 530 | if [ $compinca == y ] ; then |
|---|
| 531 | arginca="-with_inca " |
|---|
| 532 | else |
|---|
| 533 | arginca=" " |
|---|
| 534 | fi |
|---|
| 535 | |
|---|
| 536 | |
|---|
| 537 | echo ./make_icosa -$optmode -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile |
|---|
| 538 | ./make_icosa -$optmode -parallel $parallel -external_ioipsl $argoasis -with_xios -arch $fcm_arch -arch_path $arch_path -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 539 | # Test if compiling finished |
|---|
| 540 | if [[ $? != 0 ]] ; then |
|---|
| 541 | echo "THERE IS A PROBLEM IN DYNAMICO COMPILATION - STOP" |
|---|
| 542 | exit |
|---|
| 543 | fi |
|---|
| 544 | fi |
|---|
| 545 | |
|---|
| 546 | ## 2.9 Compile interface ICOSA_LMDZ |
|---|
| 547 | if [ $compdyna == y ] ; then |
|---|
| 548 | cd $modipsl/modeles/ICOSA_LMDZ |
|---|
| 549 | echo; echo "NOW COMPILE ICOSA_LMDZ " |
|---|
| 550 | echo >> $outfile ; echo " NOW COMPILE ICOSA_LMDZ" >> $outfile |
|---|
| 551 | |
|---|
| 552 | echo ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile |
|---|
| 553 | ./make_icosa_lmdz -nodeps -p lmd -$optmode -parallel $parallel $argoasis -with_orchidee $arginca -arch ${fcm_arch} -arch_path ${arch_path} -job 8 $full_dyna >> $outfile 2>&1 |
|---|
| 554 | # Test if compiling finished |
|---|
| 555 | if [[ $? != 0 ]] ; then |
|---|
| 556 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION - STOP" |
|---|
| 557 | exit |
|---|
| 558 | fi |
|---|
| 559 | # Move executables to modipsl/bin |
|---|
| 560 | if [ -f $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe ] ; then |
|---|
| 561 | if [ $compinca == y ] ; then |
|---|
| 562 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe |
|---|
| 563 | # Create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 564 | cd $modipsl/bin |
|---|
| 565 | rm -f icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 566 | ln -s icosa_lmdz_${orchversion}_${optmode}_${optchimie}.exe icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 567 | else |
|---|
| 568 | mv $modipsl/modeles/ICOSA_LMDZ/bin/icosa_lmdz.exe $modipsl/bin/icosa_lmdz_${orchversion}_${optmode}.exe |
|---|
| 569 | fi |
|---|
| 570 | else |
|---|
| 571 | echo "THERE IS A PROBLEM IN ICOSA_LMDZ COMPILATION EXECUTABLE MISSING - STOP" |
|---|
| 572 | exit |
|---|
| 573 | fi |
|---|
| 574 | fi |
|---|
| 575 | |
|---|
| 576 | |
|---|
| 577 | ## 2.10 Compile LMDZ for regular latlon configuration |
|---|
| 578 | if [ $regular_latlon = y ] && [ $complmdz = y ] ; then |
|---|
| 579 | |
|---|
| 580 | cd $modipsl/modeles/LMDZ |
|---|
| 581 | # Compile LMDZ regular lat-lon exectuable |
|---|
| 582 | echo; echo "NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" |
|---|
| 583 | echo >> $outfile ; echo " NOW COMPILE LMDZ REGULAR LAT-LON MODE. Resolution = ${resol_atm}" >> $outfile |
|---|
| 584 | # Check if the compilation of LMDZ was previsouly interupted prematured. |
|---|
| 585 | # In that case, the files dimension.h and .lock exist. If the files exist, they are here removed to avoid makelmdz_fcm |
|---|
| 586 | # to ask question and wait for interactivly answer from the user. |
|---|
| 587 | if [ -f libf/grid/dimensions.h ] || [ -f .lock ] ; then |
|---|
| 588 | echo >> $outfile |
|---|
| 589 | echo " WARNING!! The file LMDZ/libf/grid/dimension.h and/or the LMDZ/.lock exist. " >> $outfile |
|---|
| 590 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
|---|
| 591 | echo " The files dimension.h and .lock will now be removed. " >> $outfile |
|---|
| 592 | echo >> $outfile |
|---|
| 593 | rm -f libf/grid/dimensions.h |
|---|
| 594 | rm -f .lock |
|---|
| 595 | fi |
|---|
| 596 | |
|---|
| 597 | # Need to define the proper option for radiative code compilation. By default, we use rrtm |
|---|
| 598 | case $rad in |
|---|
| 599 | oldrad) opt_rad="" ;; |
|---|
| 600 | rrtm) opt_rad="-rad rrtm" ;; |
|---|
| 601 | ecrad) opt_rad="-rad ecrad" ;; |
|---|
| 602 | *) echo Only oldrad rrtm ecrad for rad option ; exit |
|---|
| 603 | esac |
|---|
| 604 | |
|---|
| 605 | if [ $compinca == y ] ; then |
|---|
| 606 | arginca="-chimie INCA" |
|---|
| 607 | else |
|---|
| 608 | arginca="" |
|---|
| 609 | fi |
|---|
| 610 | |
|---|
| 611 | if [ $compoasis == y ] ; then |
|---|
| 612 | argoasis="-c OMCT" |
|---|
| 613 | else |
|---|
| 614 | argoasis="" |
|---|
| 615 | fi |
|---|
| 616 | echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile |
|---|
| 617 | ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd $opt_rad -$optmode -mem -parallel $parallel $arginca -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz gcm >> $outfile 2>&1 |
|---|
| 618 | # Test if compiling finished |
|---|
| 619 | if [[ $? != 0 ]] ; then |
|---|
| 620 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 621 | exit |
|---|
| 622 | fi |
|---|
| 623 | |
|---|
| 624 | # Find executable suffix |
|---|
| 625 | suffix=_${resol_atm}_phylmd |
|---|
| 626 | suffix=${suffix}_${rad} |
|---|
| 627 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
|---|
| 628 | suffix=${suffix}_seq_orch_inca.e |
|---|
| 629 | else |
|---|
| 630 | if [ $compoasis == y ] ; then |
|---|
| 631 | suffix=${suffix}_para_mem_orch_couple |
|---|
| 632 | else |
|---|
| 633 | suffix=${suffix}_para_mem_orch |
|---|
| 634 | fi |
|---|
| 635 | if [ $compinca == y ] ; then |
|---|
| 636 | suffix=${suffix}_inca.e |
|---|
| 637 | else |
|---|
| 638 | suffix=${suffix}.e |
|---|
| 639 | fi |
|---|
| 640 | fi |
|---|
| 641 | echo gcm suffix = $suffix |
|---|
| 642 | |
|---|
| 643 | # Move executables to modipsl/bin folder |
|---|
| 644 | echo "Move gcm.e executable to modipsl/bin" |
|---|
| 645 | if [ -f $modipsl/modeles/LMDZ/bin/gcm${suffix} ] ; then |
|---|
| 646 | if [ $compinca == y ] ; then |
|---|
| 647 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e |
|---|
| 648 | # Create link to be use by IPSLCM and LMDZOR without any change in the executable name |
|---|
| 649 | cd $modipsl/bin |
|---|
| 650 | rm -f gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 651 | ln -s gcm_${resol_atm}_${orchversion}_${optmode}_${optchimie}.e gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 652 | else |
|---|
| 653 | mv $modipsl/modeles/LMDZ/bin/gcm${suffix} $modipsl/bin/gcm_${resol_atm}_${orchversion}_${optmode}.e |
|---|
| 654 | fi |
|---|
| 655 | else |
|---|
| 656 | echo "ERROR gcm${suffix} executable does not exist." |
|---|
| 657 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 658 | exit |
|---|
| 659 | fi |
|---|
| 660 | |
|---|
| 661 | # Find executable suffix |
|---|
| 662 | suffix=_${resol_atm}_phylmd |
|---|
| 663 | suffix=${suffix}_${rad} |
|---|
| 664 | if [ $parallel == seq ] || [ $parallel == none ] ; then |
|---|
| 665 | suffix=${suffix}_seq_orch.e |
|---|
| 666 | else |
|---|
| 667 | if [ $compoasis == y ] ; then |
|---|
| 668 | suffix=${suffix}_para_mem_orch_couple.e |
|---|
| 669 | else |
|---|
| 670 | suffix=${suffix}_para_mem_orch.e |
|---|
| 671 | fi |
|---|
| 672 | fi |
|---|
| 673 | echo ce0l suffix = $suffix |
|---|
| 674 | |
|---|
| 675 | # Compile ce0l initialization program for LMDZ regular lat-lon exectuable |
|---|
| 676 | cd $modipsl/modeles/LMDZ |
|---|
| 677 | echo; echo "NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" |
|---|
| 678 | echo >> $outfile ; echo " NOW COMPILE CE0L OF LMDZ. Resolution = ${resol_atm}" >> $outfile |
|---|
| 679 | |
|---|
| 680 | echo ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile |
|---|
| 681 | ./makelmdz_fcm -d ${resol_atm} $argoasis -p lmd -rrtm true -$optmode -mem -parallel $parallel -io xios -v $argorch -arch $fcm_arch -arch_path $arch_path -j 8 $full_lmdz ce0l >> $outfile 2>&1 |
|---|
| 682 | # Test if compiling finished |
|---|
| 683 | if [[ $? != 0 ]] ; then |
|---|
| 684 | echo "THERE IS A PROBLEM IN CE0L (LMDZ) REGULAR LATLON COMPILATION - STOP" |
|---|
| 685 | exit |
|---|
| 686 | fi |
|---|
| 687 | |
|---|
| 688 | |
|---|
| 689 | # Move executable ce0l to modipsl/bin folder |
|---|
| 690 | echo "Move ce0l executable to modipsl/bin" |
|---|
| 691 | if [ -f $modipsl/modeles/LMDZ/bin/ce0l${suffix} ] ; then |
|---|
| 692 | mv $modipsl/modeles/LMDZ/bin/ce0l${suffix} $modipsl/bin/ce0l_${resol_atm}_${optmode}.e |
|---|
| 693 | else |
|---|
| 694 | echo "ERROR ce0l${suffix} executable does not exist." |
|---|
| 695 | echo "THERE IS A PROBLEM IN LMDZ REGULAR LATLON COMPILATION - STOP" |
|---|
| 696 | exit |
|---|
| 697 | fi |
|---|
| 698 | fi |
|---|
| 699 | |
|---|
| 700 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
|---|
| 701 | echo ls -lrt modipsl/bin >> $outfile |
|---|
| 702 | ls -lrt $modipsl/bin >> $outfile |
|---|
| 703 | |
|---|
| 704 | echo; echo "ALL COMPILING FINISHED" ; echo |
|---|
| 705 | echo "Executables are found in modipsl/bin" |
|---|
| 706 | echo "Check that executable names correspond with the name set in config.card before launching the job" |
|---|
| 707 | echo ls -lrt modipsl/bin |
|---|
| 708 | ls -lrt $modipsl/bin |
|---|
| 709 | |
|---|
| 710 | date |
|---|
| 711 | |
|---|
| 712 | exit |
|---|
| 713 | |
|---|
| 714 | |
|---|
