source: CONFIG_DEVT/IPSLCM6.5_work_ENSEMBLES/oasis3-mct/examples/spoc/spoc_communication/run_spoc_oa @ 5725

#!/bin/ksh
#set -xv
######################################################################
#
host=`uname -n`
user=`whoami`
#
## - Define paths
srcdir=`pwd`
datadir=$srcdir/data_spoc
casename=`basename $srcdir`
#
## - Name of the executables
    exe1=ocean
    exe2=atmos
#
############### User's section #######################################
#
## - Define architecture and coupler 
arch=pgi_openmpi_openmp_linux  # training, belenos, nemo_lenovo, mac 
              # kraken, gfortran_openmpi_openmp_linux
              # pgi_openmpi_openmp_linux, 
              # pgi20.4_openmpi_openmp_linux (not work with 4.0)
              # gnu1020_openmpi_openmp_linux (not work with 4.0)
#
# - Define number of processes to run each executable
    nproc_exe1=4
    nproc_exe2=4
#
############### End of user's section ################################
#
# - Define rundir
    rundir=${srcdir}/work_${casename}_${nproc_exe1}_${nproc_exe2}
#
echo '*****************************************************************'
echo '*** '$casename' : '$run
echo ''
echo 'Rundir       :' $rundir
echo 'Architecture :' $arch
echo 'Host         : '$host
echo 'User         : '$user
echo ''
echo $exe1' runs on '$nproc_exe1 'processes'
echo $exe2' runs on '$nproc_exe2 'processes'
echo ''
######################################################################
### 1. Create rundir and copy everything needed
#
\rm -fr $rundir
mkdir -p $rundir
cp -f $datadir/*nc  $rundir/.
cp -f $srcdir/$exe1 $rundir/.
cp -f $srcdir/$exe2 $rundir/.
cp -f $datadir/namcouple $rundir/.
cd $rundir
######################################################################
### 2. Definition of mpirun command and batch script
#
if [ $arch == training ]; then
    MPIRUN=/usr/local/intel/impi/2018.1.163/bin64/mpirun
elif [ $arch == gfortran_openmpi_openmp_linux ]; then
    MPIRUN=/usr/lib64/openmpi/bin/mpirun
elif [ $arch == pgi_openmpi_openmp_linux ]; then
    MPIRUN=/usr/local/pgi/linux86-64/18.7/mpi/openmpi-2.1.2/bin/mpirun
elif [ $arch == gnu1020_openmpi_openmp_linux ]; then
    MPIRUN=/usr/local/openmpi/4.1.0_gcc1020/bin/mpirun
elif [ $arch == pgi20.4_openmpi_openmp_linux ]; then
    MPIRUN=/usr/local/pgi/linux86-64/20.4/mpi/openmpi-3.1.3/bin/mpirun
elif [ $arch == belenos ] ; then
   (( nproc = $nproc_exe1 + $nproc_exe2 ))
  cat <<EOF > $rundir/run_$casename.$arch
#!/bin/bash
#SBATCH --exclusive
#SBATCH --partition=normal256
#SBATCH --time=00:10:00
#SBATCH --job-name=spoc     # job name
#SBATCH -N 1                # number of nodes
#SBATCH -n $nproc                # number of procs
#SBATCH -o $rundir/$casename.o
#SBATCH -e $rundir/$casename.e
ulimit -s unlimited
cd $rundir
module load intelmpi/2018.5.274
module load intel/2018.5.274
module load netcdf-fortran/4.5.2_V2
#
export KMP_STACKSIZE=1GB
export I_MPI_WAIT_MODE=enable
#
time mpirun -np $nproc_exe1 ./$exe1 : -np $nproc_exe2 ./$exe2
#
EOF
#
elif [ ${arch} == nemo_lenovo ] ; then
  MPIRUN=mpirun
  (( nproc = $nproc_exe1 + $nproc_exe2 ))
  cat <<EOF > $rundir/run_$casename.$arch
#!/bin/bash -l
# Nom du job
#SBATCH --job-name spoc
# Temps limite du job
#SBATCH --time=00:10:00
#SBATCH --partition debug
#SBATCH --output=$rundir/$casename.o
#SBATCH --error=$rundir/$casename.e
# Nombre de noeuds et de processus
#SBATCH --nodes=1 --ntasks-per-node=$nproc
#SBATCH --distribution cyclic
cd $rundir
ulimit -s unlimited
#SPOC module purge
#SPOC module -s load compiler/intel/2015.2.164 mkl/2015.2.164 mpi/intelmpi/5.0.3.048
#
time $MPIRUN -np $nproc_exe1 ./$exe1 : -np $nproc_exe2 ./$exe2
#
EOF
elif [ ${arch} == kraken ] ; then
  (( nproc = $nproc_exe1 + $nproc_exe2 ))
  cat <<EOF > $rundir/run_$casename.$arch
#!/bin/bash -l
#SBATCH --partition prod
# Nom du job
#SBATCH --job-name spoc
# Temps limite du job
#SBATCH --time=00:10:00
#SBATCH --output=$rundir/$casename.o
#SBATCH --error=$rundir/$casename.e
# Nombre de noeuds et de processus
#SBATCH --nodes=1 --ntasks-per-node=$nproc
#SBATCH --distribution cyclic

cd $rundir

ulimit -s unlimited
module purge
module load compiler/intel/18.0.1.163
module load mpi/intelmpi/2018.1.163
module load lib/netcdf-fortran/4.4.4_impi
module load lib/phdf5/1.8.20_impi

time mpirun -np $nproc_exe1 ./$exe1 : -np $nproc_exe2 ./$exe2
EOF

fi 
  
######################################################################
### 3. Model execution or batch submission
#
if [ $arch == training ] || [ $arch == gfortran_openmpi_openmp_linux ] || [ $arch == gnu1020_openmpi_openmp_linux ] || [ $arch == pgi_openmpi_openmp_linux ] || [ $arch == pgi20.4_openmpi_openmp_linux ]; then
    export OMP_NUM_THREADS=1
    echo 'Executing the model using '$MPIRUN 
    $MPIRUN -oversubscribe -np $nproc_exe1 ./$exe1 : -np $nproc_exe2 ./$exe2 
elif [ $arch == belenos ]; then
    echo 'Submitting the job to queue using sbatch'
    sbatch $rundir/run_$casename.$arch
    squeue -u $user
elif [ ${arch} == nemo_lenovo ] || [ ${arch} == kraken ]; then
    echo 'Submitting the job to queue using sbatch'
    sbatch $rundir/run_$casename.$arch
    squeue -u $user
elif [ ${arch} == mac ]; then
    echo 'Executing the model using mpirun'
    ulimit -s unlimited
    mpirun --oversubscribe -np $nproc_exe1 ./$exe1 : -np $nproc_exe2 ./$exe2
fi
echo $casename 'is executed or submitted to queue.'
echo 'Results are found in rundir : '$rundir 
#
######################################################################