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Job_Post_FLUXNET @ 5587

Last change on this file since 5587 was 5570, checked in by aclsce, 3 years ago
Created ORCHIDEE_OL_TP configuration : temporary configuration to be used during prectical session.
Property svn:executable set to ``*
File size: 21.9 KB

Line
1	#!/bin/ksh
2
3	# $Date: 2010/06/25 18:48:26 $
4	# $Author: ssipsl $
5	# $Revision: 1.5 $
6	# IPSL (2006)
7	# This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC
8
9	#D--------------------------------------------------------------------==
10	#D--------------------------------------------------------------------==
11	#D-
12	#D- Job to launch FLUXNET spinup simulations
13	#D-
14	#D--------------------------------------------------------------------==
15	#D--------------------------------------------------------------------==
16	#D-
17	# Job inspired from SÃ¶nke Zaehle "site_new.def" job
18	# #################################################
19
20	if [ $# -lt 1 ] ; then
21	echo ""
22	echo "ERROR: Bad usage. You must give the name of the card as argument."
23	echo "Note that this script is only supposed to be used with fluxnet simulation."
24	echo "Do as follow for fluxnet simulation with fluxnet.card:"
25	echo " ./Job_Post_FLUXNET fluxnet > out_Job_Post_FLUXNET 2>&1"
26	echo ""
27	exit
28	fi
29
30
31
32	SUBMIT_DIR=$( pwd )
33	MODIPSL=$(cd ${SUBMIT_DIR}'/../../..';pwd;)
34	libIGCM=${MODIPSL}/libIGCM
35
36
37
38	# CleanSmallFiles : option to remove small output files before saving
39	CleanSmallFiles=yes
40	export CleanSmallFiles
41
42	# All SubJobs in SPINUP in ONE OR MORE YEARS run (must be used with libIGCM branches/AllPostFred).
43
44
45
46	#D--------------------------------------------------------------------==
47	#D- -1. User modification place
48	#D--------------------------------------------------------------------==
49
50	#D- Increased verbosity (1, 2, 3)
51	#Verbosity=3
52
53	#D-
54	# --------------------------------------------------------------------
55	#D- ! Optionnal features /!\ Use with care !
56	# --------------------------------------------------------------------
57
58	#D- Low level debug : to bypass lib test checks and stack construction
59	#D- Default=true
60	DEBUG_debug=false
61
62	#D- Set DEBUG_sys to false to disable output calls of function
63	#D- Default=true
64	#DEBUG_sys=false
65
66	#D- Turn in dry run mode ? (0,1,2,3)
67	#D- Default=0
68	#DRYRUN=3
69	# YOU MUST COMPILE YOUR EXE FILES FOR DRYRUN MODE !
70	# -------------------------------------------------------------------------------------
71	# \| DRYRUN= \| Date computations, \| sys_Get \| Exe \| sys_Put_Out; sys_Put_Rest \|
72	# \| \| Cp/Exe param files \| \| Chmod \| \|
73	# \| \| Qsub \| \| \| \|
74	# -------------------------------------------------------------------------------------
75	# \| 0 \| yes \| yes \| yes \| yes \|
76	# -------------------------------------------------------------------------------------
77	# \| 1 \| yes \| yes \| yes \| no \|
78	# -------------------------------------------------------------------------------------
79	# \| 2 \| yes \| yes \| no \| no \|
80	# -------------------------------------------------------------------------------------
81	# \| 3 \| yes \| no \| no \| no \|
82	# -------------------------------------------------------------------------------------
83
84
85	#D-
86	#D--------------------------------------------------------------------==
87	#D- 0. System Environment
88	#D- - Define variables for Number of processors
89	#D- - Define MPI variables
90	#D- - Define batch scheduler variables
91	#D- - Source IGCM Library
92	#D- - Get RESOLution in .resol file (temporary)
93	#D--------------------------------------------------------------------==
94
95	#D--------------------------------------------------------------------==
96	. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
97	. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
98	. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
99	#-------
100	. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
101	. ${libIGCM}/libIGCM_config/libIGCM_config.ksh
102	. ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh
103	. ${libIGCM}/libIGCM_post/libIGCM_post.ksh
104	#-------
105	( ${DEBUG_debug} ) && IGCM_debug_Check
106	( ${DEBUG_debug} ) && IGCM_card_Check
107	( ${DEBUG_debug} ) && IGCM_date_Check
108
109	#D--------------------------------------------------------------------==
110	#D- 0.1 COMMON ENVIRONMENT
111	#D- - Read libIGCM compatibility version in config.card
112	#D- - Read UserChoices section
113	#D- - Read Ensemble section
114	#D- - Read Post section
115	#D- - Define all netcdf output directories
116	#D--------------------------------------------------------------------==
117	IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card
118
119	#D--------------------------------------------------------------------==
120	#D- 1. INITIALIZE CONFIGURATION
121	#D- - Simulation configuration
122	#D- - Simulation parameters
123	#D- - Execution parameter
124	#D- - Define input files directory
125	#D- - Read or initialize CumulPeriod
126	#D- - run.card
127	#D---------------------------------------------------------------------==
128	IGCM_config_Initialize
129
130
131	IGCM_sys_Cp -p ensemble.card ref.card
132	IGCM_sys_Cp -p $1.card ensemble.card
133
134	IGCM_sys_Rm -f ${SUBMIT_DIR}/liste_glost.list
135	IGCM_sys_Rm -f ${SUBMIT_DIR}/job_output_
136
137
138	#set -vx
139
140	. ${SUBMIT_DIR}/ensemble.ksh
141
142	ENSEMBLE_initialize
143
144	# Launch ATLAS syncho : we have to wait for the last job !
145
146	# ATLAS fix parameters :
147	# Atlas Name :
148	AtlasCfg=${ensemble_SPINUP_AtlasCfg}
149	#atlas_FLUXNET.cfg
150
151	# observation_file
152	observation_file_path=${ensemble_SPINUP_observation_base_path}/'${Site}_${FYEAR}-${LYEAR}.nc'
153
154
155	# old history file
156
157	reference_base_path=${ensemble_SPINUP_reference_base_path}
158	if [ X${reference_base_path} == X"" ] \|\| [ X${reference_base_path} == XNONE ] ; then
159	flag_reference=0
160	reference_config="_"
161	reference_file_path=NONE
162	else
163	flag_reference=1
164	reference_config=${ensemble_SPINUP_reference_config}
165	reference_file_path=${reference_base_path}/${reference_config}/'${Site}${reference_config}HIST/SRF/Output/MO/${Site}${reference_config}HIST_${FYEAR}0101_${LYEAR}1231_1M_sechiba_history.nc'
166
167	fi
168	export reference_config
169
170
171
172	# Modulo for SpinUp years
173	Modulo=${ensemble_SPINUP_Modulo}
174
175
176
177	# Create RUN_DIR
178	echo RUN_DIR_PATH=${RUN_DIR_PATH}
179	IGCM_sys_MkdirWork ${RUN_DIR_PATH}
180	cp *jnl ${RUN_DIR_PATH}/.
181	cp *cfg ${RUN_DIR_PATH}/.
182	cd ${RUN_DIR_PATH}
183
184
185	echo ${ensemble_CONFIG_Groups[*]}
186	for group in ${ensemble_CONFIG_Groups[*]} ; do
187	isite=1
188	index=0
189
190	eval temp=\${ensemble_CONFIG_${group}[*]}
191	set -A group_site -- $temp
192
193	# Number of sites :
194	NumSites=$(( ${#group_site[*]} / NumInfosBySite ))
195
196	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
197
198	IGCM_sys_Rm -Rf ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
199	IGCM_sys_Mkdir ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
200
201	while [ ${isite} -le ${NumSites} ] ; do
202
203	site=${group_site[$index]}
204	echo $site
205
206	TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
207	YEAR=${group_site[ $(( index + ColumnYear )) ]}
208
209	Site=$site
210	echo $YEAR
211	DUREE=${TIME_YEAR}
212	FYEAR=${YEAR}
213	(( LYEAR=FYEAR+DUREE-1 ))
214	echo $site
215	SpinUpJob=${site}${config_UserChoices_JobName}
216	TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
217	YEAR=${group_site[ $(( index + ColumnYear )) ]}
218	Stand_Age=${group_site[ $(( index + ColumnAge )) ]}
219
220	if [ ${Stand_Age} -gt 150 ] ; then
221	DATE_END_SECTOF=150
222	else
223	DATE_END_SECTOF=$((Stand_Age - TIME_YEAR))
224	fi
225
226
227	fichier_with_path=$( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}/${SpinUpJob}HIST/SRF/Output/MO/*_sechiba_history.nc )
228
229	fichier_with_path_SBG=$( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}/${SpinUpJob}HIST/SBG/Output/MO/*_stomate_history.nc )
230
231	itis=0
232	for j in {5..32} ; do
233	itis=${group_site[ $(( index + j )) ]}
234	if [ ${itis} == 1 ] ; then
235	esp=$(( j - 4 ))
236	fi
237	done
238
239	echo "PFT=" ${esp}
240
241	eval observation_file=${observation_file_path}
242	eval reference_file=${reference_file_path}
243
244	echo "reference_config=" ${reference_config}
245
246	ferret -script simple_info.jnl ${fichier_with_path_SBG} ${esp} ${site}
247
248	cp simple_info.csv ${SUBMIT_DIR}/simple_info.csv
249
250	ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 hour ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
251	ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 day ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
252	ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 month ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
253	ferret -script taylor_arrow_fluxnet_final_1.jnl GPP GPP/1800 year ${flag_reference} GPP ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
254
255	ferret -script taylor_arrow_fluxnet_final_1.jnl $maint_resp+hetero_resp+growth_resp$ Reco/1800 hour ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
256	ferret -script taylor_arrow_fluxnet_final_1.jnl $maint_resp+hetero_resp+growth_resp$ Reco/1800 day ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
257	ferret -script taylor_arrow_fluxnet_final_1.jnl $maint_resp+hetero_resp+growth_resp$ Reco/1800 month ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
258	ferret -script taylor_arrow_fluxnet_final_1.jnl $maint_resp+hetero_resp+growth_resp$ Reco/1800 year ${flag_reference} TER ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
259
260	ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 hour ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
261	ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 day ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
262	ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 month ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
263	ferret -script taylor_arrow_fluxnet_final_1.jnl NEE NEE/1800 year ${flag_reference} NEE ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
264
265	ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F hour ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
266	ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F day ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
267	ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F month ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
268	ferret -script taylor_arrow_fluxnet_final_1.jnl Qh H_F year ${flag_reference} SH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
269
270	ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F hour ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
271	ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F day ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
272	ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F month ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
273	ferret -script taylor_arrow_fluxnet_final_1.jnl Qle LE_F year ${flag_reference} LH ${config_UserChoices_JobName} ${reference_config} ${group} ${site} ${fichier_with_path} ${observation_file} ${reference_file}
274
275
276	# We test if the END step was moved in SpinUp/SPIN/Output directory.
277	# Then we are sure the last historical SpinUp step has finished (HIST)...
278
279	# Define name of the END SubJob (FIN) in SpinUp
280	if [ ${DATE_END_SECTOF} -gt 0 ] ; then
281	BeforeLastJob=${site}${config_UserChoices_JobName}FIN
282	else
283	echo "We must have an \"duree_final\" non zero to get historical run and post-treatment"
284	exit 1
285	fi
286
287	TIME_YEAR=${group_site[ $(( index + ColumnLength )) ]}
288	YEAR=${group_site[ $(( index + ColumnYear )) ]}
289
290	ATLAS_ARGS=${AtlasCfg}\ ${observation_file}\ ${reference_file}\ ${reference_config}\ ${Modulo}
291
292	echo "ATLAS_ARGS:" ${ATLAS_ARGS}
293
294
295	# Launch post-treatment for SPINUP !
296	echo "****"
297	echo "Launch post-treatment for SPINUP for site ${site} !"
298	echo "call to post_FLUXNET:" ${MODIPSL} ${group} ${site} ${TIME_YEAR} ${YEAR} ${ATLAS_ARGS}
299	# nohup ${SUBMIT_DIR}/post_FLUXNET ${MODIPSL} ${group} ${site} ${TIME_YEAR} ${YEAR} ${ATLAS_ARGS} > ${SUBMIT_DIR}/out_post_${site} 2>&1 &
300	echo ${SUBMIT_DIR}/post_FLUXNET ${MODIPSL} ${group} ${site} ${ATLAS_ARGS} \> ${SUBMIT_DIR}/out_post_${site} >> ${SUBMIT_DIR}/liste_glost.list
301	echo "****"
302
303	(( isite=isite+1 ))
304	(( index=index+NumInfosBySite ))
305	done
306
307
308
309	if [ ${#ensemble_CONFIG_Groups[*]} -ne 1 ] ; then
310	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_hour.csv
311	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_day.csv
312	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_month.csv
313	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_GPP_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_GPP_year.csv
314
315	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_hour.csv
316	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_day.csv
317	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_month.csv
318	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_TER_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_TER_year.csv
319
320	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_hour.csv
321	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_day.csv
322	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_month.csv
323	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_NEE_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_NEE_year.csv
324
325	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_hour.csv
326	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_day.csv
327	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_month.csv
328	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_SH_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_SH_year.csv
329
330	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_hour.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_hour.csv
331	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_day.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_day.csv
332	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_month.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_month.csv
333	cat stat_${config_UserChoices_JobName}_${reference_config}_${group}_LH_year.csv >> stat_${config_UserChoices_JobName}_${reference_config}_ALL_LH_year.csv
334
335	fi
336
337
338	sed -e "s,$flag_reference_file=$$.$,\1${flag_reference},g" -e "s,$group=$$.$,\1\"${group}\",g" -e "s,$config_eval=$$.$,\1\"${config_UserChoices_JobName}\",g" -e "s,$config_ref=$$.$,\1\"${reference_config}\",g" atlas_FLUXNET_taylor.cfg > atlas_FLUXNET_taylor_${group}.cfg
339
340	atlas -o fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} atlas_FLUXNET_taylor_${group}.cfg toto
341
342	# Remove small files before saving
343	if [ X$CleanSmallFiles = Xyes ] ; then
344	tmpdir=fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
345	# Remove .info .tex .jnl .stdout .jpg .pdf
346	echo "Remove small files before saving : "
347	sumfilestoremove=$(( $( find $tmpdir -name ".info" \| wc -l ) + $( find $tmpdir -name ".jnl" \| wc -l ) + $( find $tmpdir -name ".stdout" \| wc -l ) + $( find $tmpdir -name ".tex" \| wc -l ) + $( ls $tmpdir/*.pdf \| wc -l ) ))
348	echo "Following $sumfilestoremove files listed below will be removed:"
349	find ${tmpdir} -name "*.info"
350	find ${tmpdir} -name "*.jnl"
351	find ${tmpdir} -name "*.stdout"
352	find ${tmpdir} -name "*.tex"
353	ls ${tmpdir}/pdf ${tmpdir}//*pdf
354
355	# Now remove them
356	find ${tmpdir} -name "*.info" -print -exec rm -f '{}' \;
357	find ${tmpdir} -name "*.jnl" -print -exec rm -f '{}' \;
358	find ${tmpdir} -name "*.stdout" -print -exec rm -f '{}' \;
359	find ${tmpdir} -name "*.tex" -print -exec rm -f '{}' \;
360	# rm -f ${tmpdir}//pdf
361	else
362	echo "No clean of small files will be done"
363	fi
364
365	# Save files
366	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
367	echo "Before IGCM_sys_Put_Dir : destination= ${R_SAVE}"
368
369	IGCM_sys_Put_Dir fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} ${R_SAVE}
370	IGCM_sys_Rm -Rf fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
371
372
373	done
374
375	nlignes=`less ${SUBMIT_DIR}/liste_glost.list \| wc -l `
376	nproc=`echo "$nlignes/4+1" \| bc`
377	sed -e "s/#MSUB\ \-n.*/#MSUB\ \-n\ ${nproc}/" ${SUBMIT_DIR}/job_output > ${SUBMIT_DIR}/job_output_
378	echo ccc_mprun ./glost_launch ${SUBMIT_DIR}/liste_glost.list >> ${SUBMIT_DIR}/job_output_
379	ccc_msub ${SUBMIT_DIR}/job_output_
380
381
382
383	if [ ${#ensemble_CONFIG_Groups[*]} -ne 1 ] ; then
384	group="ALL"
385	IGCM_sys_Rm -Rf ${R_SAVE}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
386
387	sed -e "s,$flag_reference_file=$$.$,\1${flag_reference},g" -e "s,$group=$$.$,\1\"${group}\",g" -e "s,$config_eval=$$.$,\1\"${config_UserChoices_JobName}\",g" -e "s,$config_ref=$$.$,\1\"${reference_config}\",g" atlas_FLUXNET_taylor.cfg > atlas_FLUXNET_taylor_${group}.cfg
388
389	atlas -o fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} atlas_FLUXNET_taylor_${group}.cfg toto
390
391
392	# Remove small files before saving
393	if [ X$CleanSmallFiles = Xyes ] ; then
394	tmpdir=fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
395	# Remove .info .tex .jnl .stdout .jpg .pdf
396	echo "Remove small files before saving : "
397	sumfilestoremove=$(( $( find $tmpdir -name ".info" \| wc -l ) + $( find $tmpdir -name ".jnl" \| wc -l ) + $( find $tmpdir -name ".stdout" \| wc -l ) + $( find $tmpdir -name ".tex" \| wc -l ) + $( ls $tmpdir/*.pdf \| wc -l ) ))
398	echo "Following $sumfilestoremove files listed below will be removed:"
399	find ${tmpdir} -name "*.info"
400	find ${tmpdir} -name "*.jnl"
401	find ${tmpdir} -name "*.stdout"
402	# find ${tmpdir} -name "*.jpg"
403	find ${tmpdir} -name "*.tex"
404	ls ${tmpdir}/*pdf
405
406	# Now remove them
407	# find ${tmpdir} -name "*.info" -print -exec rm -f '{}' \;
408	# find ${tmpdir} -name "*.jnl" -print -exec rm -f '{}' \;
409	# find ${tmpdir} -name "*.stdout" -print -exec rm -f '{}' \;
410	## find ${tmpdir} -name "*.jpg" -print -exec rm -f '{}' \;
411	# find ${tmpdir} -name "*.tex" -print -exec rm -f '{}' \;
412	# rm -f ${tmpdir}//pdf
413	else
414	echo "No clean of small files will be done"
415	fi
416
417	# Save files
418	R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}
419	IGCM_sys_Put_Dir fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group} ${R_SAVE}
420	IGCM_sys_Rm -Rf fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${group}
421	fi
422
423	cd ${SUBMIT_DIR}
424	IGCM_sys_Mv ref.card ensemble.card
425	IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH}

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source: CONFIG_DEVT/ORCHIDEE_OL_TP/ENSEMBLE/Job_Post_FLUXNET @ 5587

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