[5570] | 1 | #!/bin/ksh |
---|
| 2 | |
---|
| 3 | ######################################################################## |
---|
| 4 | |
---|
| 5 | #D- Flag to determine if this job in a standalone mode |
---|
| 6 | #D- Default : value from AA_job if any |
---|
| 7 | StandAlone=${StandAlone:=true} |
---|
| 8 | |
---|
| 9 | #D- Increased verbosity (1, 2, 3) |
---|
| 10 | #D- Default : value from AA_job if any |
---|
| 11 | Verbosity=${Verbosity:=3} |
---|
| 12 | |
---|
| 13 | #D- Low level debug : to bypass lib test checks and stack construction |
---|
| 14 | #D- Default : value from AA_job if any |
---|
| 15 | DEBUG_debug=${DEBUG_debug:=false} |
---|
| 16 | |
---|
| 17 | |
---|
| 18 | ######################################################################## |
---|
| 19 | |
---|
| 20 | MODIPSL=$1 |
---|
| 21 | libIGCM=${libIGCM:=${MODIPSL}/libIGCM} |
---|
| 22 | |
---|
| 23 | . ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh |
---|
| 24 | . ${libIGCM}/libIGCM_card/libIGCM_card.ksh |
---|
| 25 | . ${libIGCM}/libIGCM_date/libIGCM_date.ksh |
---|
| 26 | #------- |
---|
| 27 | . ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh |
---|
| 28 | . ${libIGCM}/libIGCM_config/libIGCM_config.ksh |
---|
| 29 | . ${libIGCM}/libIGCM_comp/libIGCM_comp.ksh |
---|
| 30 | . ${libIGCM}/libIGCM_post/libIGCM_post.ksh |
---|
| 31 | #------- |
---|
| 32 | ( ${DEBUG_debug} ) && IGCM_debug_Check |
---|
| 33 | ( ${DEBUG_debug} ) && IGCM_card_Check |
---|
| 34 | ( ${DEBUG_debug} ) && IGCM_date_Check |
---|
| 35 | |
---|
| 36 | #D--------------------------------------------------------------------== |
---|
| 37 | #D- 0.1 COMMON ENVIRONMENT |
---|
| 38 | #D- - Read libIGCM compatibility version in config.card |
---|
| 39 | #D- - Read UserChoices section |
---|
| 40 | #D- - Read Ensemble section |
---|
| 41 | #D- - Read Post section |
---|
| 42 | #D- - Define all netcdf output directories |
---|
| 43 | #D--------------------------------------------------------------------== |
---|
| 44 | IGCM_config_CommonConfiguration ${SUBMIT_DIR}/config.card |
---|
| 45 | |
---|
| 46 | |
---|
| 47 | #D--------------------------------------------------------------------== |
---|
| 48 | #D- 1. INITIALIZE CONFIGURATION |
---|
| 49 | #D- - Simulation configuration |
---|
| 50 | #D- - Simulation parameters |
---|
| 51 | #D- - Execution parameter |
---|
| 52 | #D- - Define input files directory |
---|
| 53 | #D- - Read or initialize CumulPeriod |
---|
| 54 | #D- - run.card |
---|
| 55 | #D---------------------------------------------------------------------== |
---|
| 56 | IGCM_config_Initialize |
---|
| 57 | |
---|
| 58 | |
---|
| 59 | |
---|
| 60 | ######################################################################## |
---|
| 61 | #set -vx |
---|
| 62 | ######################################################################## |
---|
| 63 | # Script input parameters |
---|
| 64 | |
---|
| 65 | Group=$2 |
---|
| 66 | # Site name |
---|
| 67 | SiteArg=$3 |
---|
| 68 | Site=${SiteArg:=Gu} |
---|
| 69 | export Site |
---|
| 70 | ## Time in years in file for this site : |
---|
| 71 | #DureeArg=$4 |
---|
| 72 | #DUREE=${DureeArg:=1} |
---|
| 73 | #export DUREE |
---|
| 74 | # |
---|
| 75 | ## First year in file for this site : |
---|
| 76 | #FirstArg=$5 |
---|
| 77 | #FYEAR=${FirstArg:=1} |
---|
| 78 | #export FYEAR |
---|
| 79 | # |
---|
| 80 | #(( LYEAR=FYEAR+DUREE-1 )) |
---|
| 81 | #export LYEAR |
---|
| 82 | |
---|
| 83 | |
---|
| 84 | # Atlas Name : |
---|
| 85 | AtlasCfgArg=$4 |
---|
| 86 | AtlasCfg=${AtlasCfgArg:=atlas_FLUXNET.cfg} |
---|
| 87 | |
---|
| 88 | # observation_file |
---|
| 89 | eval observation_file_pathArg=$5 |
---|
| 90 | observation_file=${observation_file_pathArg} |
---|
| 91 | echo observation_file=${observation_file} |
---|
| 92 | |
---|
| 93 | # Modulo for SpinUp years |
---|
| 94 | ModuloArg=${8} |
---|
| 95 | echo "ModuloArg:" $ModuloArg |
---|
| 96 | |
---|
| 97 | IGCM_sys_MkdirWork ${RUN_DIR_PATH} |
---|
| 98 | echo "RUN_DIR_PATH ${RUN_DIR_PATH} ok." |
---|
| 99 | IGCM_sys_Cd ${RUN_DIR_PATH} |
---|
| 100 | |
---|
| 101 | if [ ${StandAlone} = true ] ; then |
---|
| 102 | CARD_DIR=${SUBMIT_DIR} |
---|
| 103 | else |
---|
| 104 | CARD_DIR=${RUN_DIR_PATH}/$( basename ${SUBMIT_DIR} ) |
---|
| 105 | IGCM_sys_Get_Master ${SUBMIT_DIR} ${RUN_DIR_PATH} |
---|
| 106 | fi |
---|
| 107 | |
---|
| 108 | # |
---|
| 109 | # First of all |
---|
| 110 | # |
---|
| 111 | IGCM_card_DefineArrayFromSection ${CARD_DIR}/config.card UserChoices |
---|
| 112 | typeset option |
---|
| 113 | for option in ${config_UserChoices[*]} ; do |
---|
| 114 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/config.card UserChoices ${option} |
---|
| 115 | done |
---|
| 116 | # |
---|
| 117 | echo |
---|
| 118 | IGCM_debug_Print 1 "DefineArrayFromOption : config_UserChoices" |
---|
| 119 | IGCM_debug_PrintVariables 3 config_UserChoices_JobName |
---|
| 120 | if [ 3 -le ${Verbosity} ] ; then |
---|
| 121 | echo "--------------Debug3-->" "config_UserChoices_LongName=" |
---|
| 122 | echo "--------------Debug3-->" \"${config_UserChoices_LongName}\" |
---|
| 123 | fi |
---|
| 124 | IGCM_debug_PrintVariables 3 config_UserChoices_TagName |
---|
| 125 | IGCM_debug_PrintVariables 3 config_UserChoices_CalendarType |
---|
| 126 | IGCM_debug_PrintVariables 3 config_UserChoices_DateBegin |
---|
| 127 | IGCM_debug_PrintVariables 3 config_UserChoices_DateEnd |
---|
| 128 | IGCM_debug_PrintVariables 3 config_UserChoices_PeriodLength |
---|
| 129 | echo |
---|
| 130 | |
---|
| 131 | |
---|
| 132 | # FLAG = SECHIBA, OK_STOMATE |
---|
| 133 | IGCM_card_DefineVariableFromOption ${CARD_DIR}/ensemble.card UserChoices ok_stomate |
---|
| 134 | if [ X${ensemble_UserChoices_ok_stomate} = Xn ] ; then |
---|
| 135 | export FLAG=SECHIBA |
---|
| 136 | else |
---|
| 137 | export FLAG=OK_STOMATE |
---|
| 138 | fi |
---|
| 139 | |
---|
| 140 | |
---|
| 141 | #================================== |
---|
| 142 | |
---|
| 143 | SpinUpJob=${Site}${config_UserChoices_JobName} |
---|
| 144 | set -A liste_fichiers_with_path -- $( \ls -rt ${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}/${SpinUpJob}HIST/SRF/Output/MO/*_sechiba_history.nc ) |
---|
| 145 | echo liste_fichiers_with_path=${liste_fichiers_with_path} |
---|
| 146 | ii=0 |
---|
| 147 | for filetmp in ${liste_fichiers_with_path[@]} ; do |
---|
| 148 | (( ii = ii + 1 )) |
---|
| 149 | file=$( echo ${filetmp} | xargs basename ) |
---|
| 150 | done |
---|
| 151 | if [ $ii -ne 1 ] ; then |
---|
| 152 | echo "Error. More than one file found. ii=$ii" |
---|
| 153 | exit |
---|
| 154 | fi |
---|
| 155 | echo file=$file |
---|
| 156 | |
---|
| 157 | # Get and sed atlas |
---|
| 158 | IGCM_sys_Cp ${CARD_DIR}/${AtlasCfg} ./atlas.cfg |
---|
| 159 | IGCM_sys_Cp ${CARD_DIR}/ORCHIDEE_3dif.jnl ./ORCHIDEE_3dif.jnl |
---|
| 160 | |
---|
| 161 | IGCM_sys_Cp -Rp ${liste_fichiers_with_path[0]} . |
---|
| 162 | |
---|
| 163 | # old history file |
---|
| 164 | reference_file_pathArg=$6 |
---|
| 165 | if [ X${reference_file_pathArg} == XNONE ] ; then |
---|
| 166 | reference_file_path=${liste_fichiers_with_path} |
---|
| 167 | else |
---|
| 168 | reference_file_path=${reference_file_pathArg} |
---|
| 169 | fi |
---|
| 170 | |
---|
| 171 | eval reference_file=${reference_file_path} |
---|
| 172 | sed -e "s,RRRRRRR,${reference_file},g" -e "s,VVVVVVV,${observation_file},g" atlas.cfg > atlas_.cfg |
---|
| 173 | |
---|
| 174 | echo "REFERENCE ATLAS for file : " ${file} ${reference_file} ${observation_file} |
---|
| 175 | reference_config=$7 |
---|
| 176 | atlas -o ${SpinUpJob}_${reference_config} atlas_.cfg ${file} |
---|
| 177 | |
---|
| 178 | # Remove small files before saving |
---|
| 179 | if [ X$CleanSmallFiles = Xyes ] ; then |
---|
| 180 | tmpdir=${SpinUpJob}_${reference_config} |
---|
| 181 | # Remove .info .tex .jnl .stdout .jpg .pdf (deuxieme niveau ) |
---|
| 182 | echo "Remove small files before saving : " |
---|
| 183 | sumfilestoremove=$(( $( find ${tmpdir} -name "*.info" | wc -l ) + $( find ${tmpdir} -name "*.tex" | wc -l ) + $( find ${tmpdir} -name "*.jnl" | wc -l ) + $( find ${tmpdir} -name "*.stdout" | wc -l ) + $( find ${tmpdir} -name "*.pdf" | wc -l ) )) |
---|
| 184 | echo "Following $sumfilestoremove files listed below will be removed: " |
---|
| 185 | |
---|
| 186 | find ${tmpdir} -name "*.info" |
---|
| 187 | find ${tmpdir} -name "*.tex" |
---|
| 188 | find ${tmpdir} -name "*.jnl" |
---|
| 189 | find ${tmpdir} -name "*.stdout" |
---|
| 190 | find ${tmpdir} -name "*.pdf" |
---|
| 191 | |
---|
| 192 | # Now remove them |
---|
| 193 | find ${tmpdir} -name "*.info" -print -exec rm -f '{}' \; |
---|
| 194 | find ${tmpdir} -name "*.tex" -print -exec rm -f '{}' \; |
---|
| 195 | find ${tmpdir} -name "*.jnl" -print -exec rm -f '{}' \; |
---|
| 196 | find ${tmpdir} -name "*.stdout" -print -exec rm -f '{}' \; |
---|
| 197 | find ${tmpdir} -name "*.pdf" -print -exec rm -f '{}' \; |
---|
| 198 | |
---|
| 199 | else |
---|
| 200 | echo "No clean of small files will be done." |
---|
| 201 | fi |
---|
| 202 | |
---|
| 203 | |
---|
| 204 | # Save files |
---|
| 205 | R_SAVE=${R_OUT}/${config_UserChoices_TagName}/${config_UserChoices_SpaceName}/${config_UserChoices_ExperimentName}/${config_UserChoices_JobName}/fluxnet_taylor_diff_${config_UserChoices_JobName}_${reference_config}_${Group} |
---|
| 206 | |
---|
| 207 | echo "Before IGCM_sys_Put_Dir : destination= ${R_SAVE}" |
---|
| 208 | IGCM_sys_Put_Dir ${SpinUpJob}_${reference_config} ${R_SAVE} |
---|
| 209 | |
---|
| 210 | IGCM_sys_Rm -Rf ${SpinUpJob}_${reference_config} |
---|
| 211 | |
---|
| 212 | |
---|
| 213 | |
---|
| 214 | # # Get and Apply Patch |
---|
| 215 | # . ${MODIPSL}/libIGCM/libIGCM_post/IGCM_Patch_20070220_histcom_time_axis.ksh |
---|
| 216 | # for file in ${liste_fichiers[*]} ; do |
---|
| 217 | # IGCM_Patch_20070220_histcom_time_axis ${file} |
---|
| 218 | # done |
---|
| 219 | |
---|
| 220 | # # look at files |
---|
| 221 | # echo "after Patch" IGCM_Patch_20070220_histcom_time_axis |
---|
| 222 | # \ls -lrt *_sechiba_history.nc |
---|
| 223 | |
---|
| 224 | # Concat files |
---|
| 225 | #IGCM_sys_ncrcat -o ${SpinUpJob}_1M_sechiba_history.nc ${liste_fichiers[*]} |
---|
| 226 | |
---|
| 227 | IGCM_sys_Rm -Rf ${liste_fichiers[*]} |
---|
| 228 | |
---|
| 229 | IGCM_sys_RmRunDir -Rf ${RUN_DIR_PATH} |
---|