[5570] | 1 | #!/bin/bash |
---|
| 2 | #set -vx |
---|
| 3 | # ================================================================================================================================ |
---|
| 4 | # compile_orchidee_ol.sh |
---|
| 5 | # |
---|
| 6 | # CONTACT : orchidee-help _at_ listes.ipsl.fr |
---|
| 7 | # |
---|
| 8 | # LICENCE : IPSL (2006) |
---|
| 9 | # This software is governed by the CeCILL licence see ORCHIDEE/ORCHIDEE_CeCILL.LIC |
---|
| 10 | # |
---|
| 11 | # DESCRIPTION : This script is used to compile all components needed for the ORCHIDEE offline drivers. The following components |
---|
| 12 | # will be compiled: IOIPSL, XIOS and ORCHIDEE. |
---|
| 13 | # Default compilation is set up for the machines irene/TGCC, jean-zay/IDRIS, obelix/LSCE and ciclad and |
---|
| 14 | # climserv/IPSL. For other machines compiling option needs to be specified for each of the components. |
---|
| 15 | # The script first sources a arch.env file, from folder ARCH, containing modules needed for the current machine. |
---|
| 16 | # This means that the modules do not need to be sourced before starting the compilation. Output from compilation |
---|
| 17 | # are stored in a separate file out_compile_orchidee.date. |
---|
| 18 | # For help about the script, use: ./compile_orchidee_ol.sh -h |
---|
| 19 | # |
---|
| 20 | # $HeadURL: svn://forge.ipsl.jussieu.fr/orchidee/trunk/ORCHIDEE_OL/compile_orchidee_ol.sh $ |
---|
| 21 | # $Date: 2020-04-03 12:33:11 +0200 (Fri, 03 Apr 2020) $ |
---|
| 22 | # $Revision: 6707 $ |
---|
| 23 | # ================================================================================================================================ |
---|
| 24 | |
---|
| 25 | date |
---|
| 26 | |
---|
| 27 | #### 1 Set up the compiling options |
---|
| 28 | #### Define some directories |
---|
| 29 | submitdir=$( pwd ) |
---|
| 30 | modipsl=$submitdir/../.. |
---|
| 31 | arch_path=$submitdir/ARCH |
---|
| 32 | |
---|
| 33 | #### Set default options |
---|
| 34 | # Optimization mode |
---|
| 35 | # optmode=prod/dev/debug |
---|
| 36 | optmode=prod |
---|
| 37 | |
---|
| 38 | # fcm_arch |
---|
| 39 | fcm_arch=default |
---|
| 40 | |
---|
| 41 | # parallel: mpi or seq |
---|
| 42 | parallel=mpi |
---|
| 43 | |
---|
| 44 | export fcm_arch parallel xios |
---|
| 45 | full_flag="" |
---|
| 46 | full_xios="" |
---|
| 47 | full_orch="" |
---|
| 48 | |
---|
| 49 | # Compile with linking to XIOS: xios=xios (default) |
---|
| 50 | # Use argument -without_xios for compilation without linking to XIOS: xios=noxios |
---|
| 51 | xios=xios |
---|
| 52 | |
---|
| 53 | # Compile other executables: if otherexec="-otherexec", then |
---|
| 54 | otherexec="" |
---|
| 55 | |
---|
| 56 | # Default netcdf_lib is used for XIOS but can be change by argument |
---|
| 57 | netcdf_lib="" |
---|
| 58 | |
---|
| 59 | |
---|
| 60 | #### Read arguments |
---|
| 61 | # Loop over all arguments to modify default set up |
---|
| 62 | while (($# > 0)) ; do |
---|
| 63 | case $1 in |
---|
| 64 | "-h") cat <<end_help |
---|
| 65 | ######################################################################## |
---|
| 66 | # Usage of the script compile_orchidee_ol.sh |
---|
| 67 | # |
---|
| 68 | ######################################################################## |
---|
| 69 | |
---|
| 70 | ./compile_orchidee_ol.sh [Options] |
---|
| 71 | |
---|
| 72 | Options: |
---|
| 73 | [-full]: full recompilation of all components |
---|
| 74 | [-full_orch], [-full_xios]: recompile only orchidee or xios component |
---|
| 75 | [-arch XXX]: Force to use arch-XXX.fcm and arch-XXX.path files with specific compilation options for current platform. The files must be |
---|
| 76 | available in modles/ORCHIDEE/arch, modeles/XIOS/arch and modeles/IOIPSL/arch folders. If the file config/ORCHIDEE_OL/ARCH/arch-XXX.env |
---|
| 77 | exist, it'll be sourced in the beginning of this compilation script. |
---|
| 78 | [-debug], [-dev], [-prod](default): use compilation options for debug, dev or production mode, only one option can be used |
---|
| 79 | [-all_exec]: also compile other exectables than the drivers (testrouting and forcesoil) |
---|
| 80 | [-without_xios]: no compilation or linking to XIOS. Default compilation is done with XIOS |
---|
| 81 | [-parallel seq] / [-parallel mpi](default): compile without MPI for use in sequential mode / with MPI (default). |
---|
| 82 | When using [-parallel seq], [-without_xios] must as well be set. |
---|
| 83 | [-netcdf_lib_seq]: option to tell XIOS that linking with netcdf4 sequential library will be used instead of default netcdf4 parallel library |
---|
| 84 | |
---|
| 85 | |
---|
| 86 | Example 1: Default compilation of ORCHIDEE with XIOS and IOIPSL |
---|
| 87 | ./compile_orchidee_ol.sh |
---|
| 88 | |
---|
| 89 | Example 2: Compile in debug mode |
---|
| 90 | ./compile_orchidee_ol.sh -debug |
---|
| 91 | |
---|
| 92 | Example 3: Default compilation with full recompilation of all components |
---|
| 93 | ./compile_orchidee_ol.sh -full |
---|
| 94 | |
---|
| 95 | Example 4: No compilation or linking to XIOS |
---|
| 96 | ./compile_orchidee_ol.sh -without_xios |
---|
| 97 | |
---|
| 98 | Example 5: Compilation without MPI for sequential use only. Note that XIOS must be deactivated as well. |
---|
| 99 | ./compile_orchidee_ol.sh -parallel seq -without_xios |
---|
| 100 | |
---|
| 101 | |
---|
| 102 | end_help |
---|
| 103 | exit;; |
---|
| 104 | "-parallel") parallel="$2" ; shift ; shift ;; |
---|
| 105 | "-arch") fcm_arch="$2" ; shift ; shift ;; |
---|
| 106 | "-without_xios") xios=noxios ; shift ;; |
---|
| 107 | "-debug") optmode=debug ; shift ;; |
---|
| 108 | "-dev") optmode=dev ; shift ;; |
---|
| 109 | "-prod") optmode=prod ; shift ;; |
---|
| 110 | "-full") full_flag="-full"; full_xios="--full" ; full_orch="-full" ; shift ;; |
---|
| 111 | "-full_xios") full_xios="--full" ; shift ;; # Note only full_xios is using double dash: --full |
---|
| 112 | "-full_orch") full_orch="-full" ; shift ;; |
---|
| 113 | "-all_exec") otherexec="-otherexec" ; shift ;; |
---|
| 114 | "-netcdf_lib_seq") netcdf_lib="--netcdf_lib netcdf4_seq"; shift ;; |
---|
| 115 | *) echo "unknown option "$1" , exiting..." ; exit |
---|
| 116 | esac |
---|
| 117 | done |
---|
| 118 | |
---|
| 119 | |
---|
| 120 | # Create text output file |
---|
| 121 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M"` |
---|
| 122 | outfile=$submitdir/out_compile_orchidee.$datestr |
---|
| 123 | echo > $outfile |
---|
| 124 | echo; echo "Text output from compilation will be stored in file out_compile_orchidee.$datestr"; echo |
---|
| 125 | |
---|
| 126 | |
---|
| 127 | echo "Following options are set in current compiling:" >> $outfile |
---|
| 128 | echo " optmode = $optmode, parallel = $parallel, fcm_arch = $fcm_arch " >> $outfile |
---|
| 129 | echo " full_flag=$full_flag, full_xios=$full_xios, full_orch=$full_orch" >> $outfile |
---|
| 130 | echo >> $outfile |
---|
| 131 | |
---|
| 132 | if [ $parallel = seq ] && [ $xios = y ] ; then |
---|
| 133 | echo "It is not possible to compile ORCHIDEE in sequential mode using XIOS." |
---|
| 134 | echo "Option -without_xios must be set if option [-parallel seq] is set" |
---|
| 135 | echo "Option -without_xios must be set if option [-parallel seq] is set" >> $outfile |
---|
| 136 | exit |
---|
| 137 | fi |
---|
| 138 | |
---|
| 139 | ### Read host dependent default values |
---|
| 140 | ### These variables will not be changed if they were set as argument |
---|
| 141 | ###./host.sh $host |
---|
| 142 | # Later : Following lines should be set in host.sh file |
---|
| 143 | # begin host.sh |
---|
| 144 | if [ $fcm_arch == default ] ; then |
---|
| 145 | # Find out current host and source specific paths and commands for the host |
---|
| 146 | case $( hostname -s ) in |
---|
| 147 | jean-zay*) |
---|
| 148 | fcm_arch=X64_JEANZAY;; |
---|
| 149 | irene170|irene171|irene190|irene191|irene192|irene193) |
---|
| 150 | fcm_arch=X64_IRENE;; |
---|
| 151 | irene172|irene173|irene194|irene195) |
---|
| 152 | fcm_arch=X64_IRENE-AMD;; |
---|
| 153 | asterix*|obelix*) |
---|
| 154 | fcm_arch=ifort_LSCE;; |
---|
| 155 | ciclad*|climserv*|loholt*|camelot*) |
---|
| 156 | fcm_arch=ifort_CICLAD;; |
---|
| 157 | *) |
---|
| 158 | echo Current host is not known. You must use option -arch to specify which architecuture files to use. |
---|
| 159 | echo Exit now. |
---|
| 160 | exit |
---|
| 161 | esac |
---|
| 162 | fi |
---|
| 163 | |
---|
| 164 | echo "The fcm_arch has been changed to: $fcm_arch" >> $outfile |
---|
| 165 | |
---|
| 166 | # Set a link to arch.env if arch-${fcm_arch}.env file exist for current fcm_arch. |
---|
| 167 | # The link arch.env is also set in config.card and will be used by libIGCM to ensure the same running environnement. |
---|
| 168 | if [ -f ARCH/arch-${fcm_arch}.env ] ; then |
---|
| 169 | echo >> $outfile |
---|
| 170 | echo "The file ARCH/arch-${fcm_arch}.env will now be sourced with modules needed for compilation for all components." |
---|
| 171 | echo "Note that this new environement might be kept after compilation." |
---|
| 172 | echo "If this is the case, source again your personal environment after compilation. " |
---|
| 173 | |
---|
| 174 | # Make a link to this file, to be used also in config.card |
---|
| 175 | rm -f ARCH/arch.env |
---|
| 176 | ln -s arch-${fcm_arch}.env ARCH/arch.env |
---|
| 177 | |
---|
| 178 | # Source the file |
---|
| 179 | source ARCH/arch.env >> $outfile 2>&1 |
---|
| 180 | echo >> $outfile |
---|
| 181 | echo "New module list after sourcing of ARCH/arch.env file:" >> $outfile |
---|
| 182 | module list >> $outfile 2>&1 |
---|
| 183 | else |
---|
| 184 | echo "No specific ARCH/arch-${fcm_arch}.env have been found. No change in environnement will be done." |
---|
| 185 | echo "Previous loaded module modules will be used." >> $outfile |
---|
| 186 | module list >> $outfile 2>&1 |
---|
| 187 | fi |
---|
| 188 | |
---|
| 189 | |
---|
| 190 | #### 2 Do the compilation component by component |
---|
| 191 | ## 2.1 Compile ioipsl |
---|
| 192 | cd $modipsl/modeles/IOIPSL |
---|
| 193 | echo; echo "NOW COMPILE IOIPSL" |
---|
| 194 | echo >> $outfile ; echo " NOW COMPILE IOIPSL" >> $outfile |
---|
| 195 | |
---|
| 196 | # Check if compilation with fcm is included in IOIPSL |
---|
| 197 | if [ ! -f makeioipsl_fcm ] ; then |
---|
| 198 | echo "The file makeiopsl_fcm do not exist. Probably this is not the right version of IOIPSL." |
---|
| 199 | echo "Version of IOIPSL with fcm compilation is needed to compile with this script. Stop now." |
---|
| 200 | exit |
---|
| 201 | fi |
---|
| 202 | |
---|
| 203 | echo ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile |
---|
| 204 | ./makeioipsl_fcm -$optmode -arch ${fcm_arch} -arch_path $arch_path -j 8 $full_flag >> $outfile 2>&1 |
---|
| 205 | # Test if compiling succeded |
---|
| 206 | if [[ $? != 0 ]] ; then |
---|
| 207 | echo "THERE IS A PROBLEM IN IOIPSL COMPILATION - STOP" |
---|
| 208 | exit |
---|
| 209 | fi |
---|
| 210 | |
---|
| 211 | ## 2.2 Compile xios |
---|
| 212 | if [ $xios == xios ] ; then |
---|
| 213 | cd $modipsl/modeles/XIOS |
---|
| 214 | echo; echo "NOW COMPILE XIOS" |
---|
| 215 | echo >> $outfile ; echo " NOW COMPILE XIOS" >> $outfile |
---|
| 216 | echo ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile |
---|
| 217 | ./make_xios --$optmode --arch $fcm_arch --arch_path $arch_path ${netcdf_lib} --job 4 $full_xios >> $outfile 2>&1 |
---|
| 218 | # Test if compiling succeded |
---|
| 219 | if [[ $? != 0 ]] ; then |
---|
| 220 | echo "THERE IS A PROBLEM IN XIOS COMPILATION - STOP" |
---|
| 221 | exit |
---|
| 222 | fi |
---|
| 223 | # Move executables to modipsl/bin |
---|
| 224 | if [ -f $modipsl/modeles/XIOS/bin/xios_server.exe ] ; then |
---|
| 225 | mv $modipsl/modeles/XIOS/bin/xios_server.exe $modipsl/bin/xios_server_${optmode}.exe |
---|
| 226 | else |
---|
| 227 | echo "THERE IS A PROBLEM IN XIOS COMPILATION EXECUTABLE MISSING - STOP" |
---|
| 228 | exit |
---|
| 229 | fi |
---|
| 230 | fi |
---|
| 231 | |
---|
| 232 | |
---|
| 233 | ## 2.3 Compile orchidee |
---|
| 234 | cd $modipsl/modeles/ORCHIDEE |
---|
| 235 | echo; echo "NOW COMPILE ORCHIDEE" |
---|
| 236 | echo >> $outfile ; echo " NOW COMPILE ORCHIDEE" >> $outfile |
---|
| 237 | |
---|
| 238 | # Check if the compilation of ORCHIDEE was previsouly interupted prematured. |
---|
| 239 | # In that case, the files fcm.bld.lock exist. If the file exist, it is here removed to avoid makeorchidee_fcm |
---|
| 240 | # to ask question and wait for interactivly answer from the user. |
---|
| 241 | if [ -f build/fcm.bld.lock ] ; then |
---|
| 242 | echo >> $outfile |
---|
| 243 | echo " WARNING!! The file ORCHIDEE/build/fcm.bld.lock exist. " >> $outfile |
---|
| 244 | echo " This means that the compilation is either currently on going in another terminal was previous interupted before the end." >> $outfile |
---|
| 245 | echo " The file will now be removed. " >> $outfile |
---|
| 246 | echo >> $outfile |
---|
| 247 | rm -f build/fcm.bld.lock |
---|
| 248 | fi |
---|
| 249 | |
---|
| 250 | echo ./makeorchidee_fcm -j 8 -$xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver $otherexec >> $outfile |
---|
| 251 | ./makeorchidee_fcm -j 8 -$xios -parallel $parallel -$optmode -arch ${fcm_arch} -arch_path $arch_path $full_orch -driver $otherexec >> $outfile 2>&1 |
---|
| 252 | # Test if compiling finished |
---|
| 253 | if [[ $? != 0 ]] ; then |
---|
| 254 | echo "THERE IS A PROBLEM IN ORCHIDEE COMPILATION - STOP" |
---|
| 255 | exit |
---|
| 256 | fi |
---|
| 257 | |
---|
| 258 | # Rename executables to contain $optmode |
---|
| 259 | if [ -f $modipsl/bin/orchidee_ol ] ; then mv $modipsl/bin/orchidee_ol $modipsl/bin/orchidee_ol_${optmode} ; fi |
---|
| 260 | if [ -f $modipsl/bin/orchideedriver ] ; then mv $modipsl/bin/orchideedriver $modipsl/bin/orchideedriver_${optmode} ; fi |
---|
| 261 | if [ -f $modipsl/bin/testrouting ] ; then mv $modipsl/bin/testrouting $modipsl/bin/testrouting_${optmode} ; fi |
---|
| 262 | if [ -f $modipsl/bin/forcesoil ] ; then mv $modipsl/bin/forcesoil $modipsl/bin/forcesoil_${optmode} ; fi |
---|
| 263 | |
---|
| 264 | |
---|
| 265 | |
---|
| 266 | echo >>$outfile ; echo "ALL COMPILING FINISHED" >> $outfile |
---|
| 267 | echo ls -lrt modipsl/bin >> $outfile |
---|
| 268 | ls -lrt $modipsl/bin >> $outfile |
---|
| 269 | |
---|
| 270 | echo; echo "ALL COMPILING FINISHED" ; echo |
---|
| 271 | echo "Executables are found in modipsl/bin" |
---|
| 272 | echo ls -lrt modipsl/bin |
---|
| 273 | ls -lrt $modipsl/bin |
---|
| 274 | |
---|
| 275 | date |
---|
| 276 | |
---|
| 277 | exit |
---|
| 278 | |
---|