[4775] | 1 | #!/usr/bin/env python |
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| 2 | |
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| 3 | |
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| 4 | ####################################### |
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| 5 | # |
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| 6 | # Projet Manager XMF utilities |
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| 7 | # |
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| 8 | ######################################## |
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| 9 | # This class allows to handle a cluster of h5/xmf files |
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| 10 | # for visualization purpose, through ensight and paraview. |
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| 11 | # this clas is originally used by common_visualize.py. |
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| 12 | # |
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| 13 | # Created by A. Dauptain |
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| 14 | # |
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| 15 | # Last modified : 16 septembre 2013 A Dauptain (comments) |
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| 16 | # |
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| 17 | ######################################## |
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| 18 | |
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| 19 | |
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| 20 | import os |
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| 21 | from XDR import * |
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| 22 | |
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| 23 | |
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| 24 | class XMF_Utilities(object): |
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| 25 | def __init__(self,code_id): |
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| 26 | self.code = code_id |
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| 27 | self.post_proc_dir = os.path.join(os.getcwd(),code_id.upper(),"SPATIAL") |
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| 28 | self.filename = os.path.join(self.post_proc_dir,"c3sm_xdmfgroup.xmf") |
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| 29 | |
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| 30 | self.filelocation = [] |
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| 31 | if self.code == "avbp" : |
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| 32 | self.filelocation = ["SOLUT"] |
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| 33 | if self.code == "avtp" : |
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| 34 | self.filelocation = ["SOLUT"] |
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| 35 | |
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| 36 | self.time_id_list = [0.0] |
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| 37 | self.faketime = False |
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| 38 | if self.code == "avsp" : |
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| 39 | self.faketime = True |
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| 40 | |
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| 41 | |
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| 42 | # cleaning |
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| 43 | for f in getFileList(self.post_proc_dir,"*.xmf","relative") : |
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| 44 | print "Cleaning file :",f |
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| 45 | os.remove(f) |
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| 46 | |
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| 47 | |
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| 48 | def CreateTemporaryXMFs(self,selection_files,projectLocations): |
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| 49 | """ This procedure create the main XMF solution file according to |
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| 50 | post_proc_dir is a string of the form AVSP, AVBP or YALES2, |
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| 51 | the data will be generated in the relative path ./AVSP/SPATIAL for exemple |
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| 52 | |
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| 53 | selection_files is a list of the form [file1],[0],[file2],[1],[file3],[1],[file6],[0] |
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| 54 | with files of the form "identifier # simulation # projectname # name " |
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| 55 | |
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| 56 | projectLocations is a dictionnary with project names as keys, and project relative pathes as values |
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| 57 | created smthg similar to: |
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| 58 | projectLocations={} |
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| 59 | for sc_project in getChildrenName("projects","allprojects"): |
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| 60 | project_xml=getValue("sc_project","sc_project") |
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| 61 | project_folder=project_xml.replace(".xml","") |
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| 62 | project_name = os.path.splitext( os.path.basename(project_xml) )[0] |
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| 63 | projectLocations[project_name] = project_folder |
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| 64 | """ |
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| 65 | |
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| 66 | |
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| 67 | |
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| 68 | |
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| 69 | print "Create main XMF file "+self.filename |
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| 70 | |
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| 71 | xmfsolgroup = open(self.filename, 'w') |
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| 72 | |
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| 73 | # header |
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| 74 | xmfsolgroup.write("""<?xml version="1.0" ?> |
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| 75 | <!DOCTYPE Xdmf SYSTEM "Xdmf.dtd" > |
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| 76 | <Xdmf xmlns:xi="http://www.w3.org/2003/XInclude" Version="2.0"> |
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| 77 | <Domain> |
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| 78 | <Grid GridType="Collection" CollectionType="Temporal" > |
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| 79 | """) |
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| 80 | |
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| 81 | |
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| 82 | # listy ids stores the data necessary for tags in images (enspythoncut) |
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| 83 | self.list_ids = [] |
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| 84 | |
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| 85 | for item,onoff in pairwise(selection_files) : |
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| 86 | #print onoff |
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| 87 | if onoff=="1" : |
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| 88 | # retreive project path |
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| 89 | sol_identifier = item.split('#')[0] |
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| 90 | sol_simu = item.split('#')[1] |
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| 91 | sol_project_name = item.split('#')[2] |
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| 92 | sol_run = item.split('#')[3] |
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| 93 | sol_name = item.split('#')[4] |
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| 94 | |
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| 95 | #Check if coupling or not on AVTP or AVBP |
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| 96 | addfolder="" |
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| 97 | if self.code == "avtp" : |
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| 98 | cpldir = os.path.join(projectLocations[sol_project_name],sol_run,"AVTP01") |
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| 99 | cpl_avtpfile = getFileList(cpldir,"input_couple.dat") |
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| 100 | cplfile="input_couple.dat" |
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| 101 | if cplfile in cpl_avtpfile : |
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| 102 | print "we are in couple mode of AVTP" |
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| 103 | addfolder="AVTP01" |
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| 104 | if self.code == "avbp" : |
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| 105 | cpldir = os.path.join(projectLocations[sol_project_name],sol_run,"AVBP01") |
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| 106 | cpl_avtpfile = getFileList(cpldir,"input_couple.dat") |
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| 107 | cplfile="input_couple.dat" |
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| 108 | if cplfile in cpl_avtpfile : |
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| 109 | print "we are in couple mode of AVBP" |
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| 110 | addfolder="AVBP01" |
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| 111 | |
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| 112 | |
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| 113 | temporary_name = sol_project_name+"_"+sol_run+"_"+sol_name |
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| 114 | sol_path =os.path.join(projectLocations[sol_project_name],sol_run,addfolder,*self.filelocation) |
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| 115 | |
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| 116 | time_id = self.getTimeInXMF(os.path.join(sol_path,sol_name)) |
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| 117 | |
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| 118 | # declaration of the file |
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| 119 | xmfsolgroup.write(' <xi:include href="'+temporary_name+'" xpointer="xpointer(//Xdmf/Domain/Grid)" />\n') |
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| 120 | |
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| 121 | # copy of directing file |
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| 122 | self.copy_XMF_file_updating_path(sol_name,sol_path,temporary_name,self.post_proc_dir,time_id) |
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| 123 | |
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| 124 | # solution description |
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| 125 | self.list_ids.append(sol_identifier+"#"+sol_simu+"#"+sol_project_name+"#"+sol_run) |
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| 126 | |
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| 127 | |
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| 128 | # end |
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| 129 | xmfsolgroup.write(""" </Grid> |
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| 130 | </Domain> |
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| 131 | </Xdmf> |
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| 132 | """) |
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| 133 | |
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| 134 | xmfsolgroup.close() |
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| 135 | |
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| 136 | |
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| 137 | def getTimeInXMF(self,filename): |
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| 138 | """ get the time id in an XMF file """ |
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| 139 | |
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| 140 | # search for time |
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| 141 | if not os.path.exists(filename) : |
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| 142 | msg = "File "+ filename+ " Does not exists" |
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| 143 | error(msg) |
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| 144 | else : |
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| 145 | # if time must be faken |
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| 146 | if self.faketime : |
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| 147 | time_id = self.time_id_list[-1] + 1.0 |
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| 148 | else : |
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| 149 | xmffile = open(filename,"r") |
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| 150 | lines = xmffile.readlines() |
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| 151 | xmffile.close() |
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| 152 | time_id = "-1" |
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| 153 | for line in lines : |
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| 154 | if "Time Value=" in line : |
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| 155 | time_id = float(line.split('"')[1].strip()) |
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| 156 | |
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| 157 | # case time is not faken, but no time foun |
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| 158 | if time_id == "-1" : |
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| 159 | msg = "No Time value stored in the file "+ filename+ ". Exiting..." |
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| 160 | error(msg) |
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| 161 | |
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| 162 | # avoid time duplicate |
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| 163 | if time_id in self.time_id_list : |
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| 164 | time_id += self.time_id_list[-1]/100 |
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| 165 | |
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| 166 | self.time_id_list.append(time_id) |
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| 167 | return str(time_id) |
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| 168 | |
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| 169 | |
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| 170 | |
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| 171 | def copy_XMF_file_updating_path(self,filename,location,new_filename,new_location,time_id): |
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| 172 | """ create a local copy of the target file, replacing the local relative path references by absolute ones |
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| 173 | time_id is written in the XMF to serve as an additionnal data |
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| 174 | """ |
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| 175 | |
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| 176 | print "Copy "+filename+ " into"+ new_location+", updating the inner pathes" |
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| 177 | |
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| 178 | location = location.rstrip('/') |
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| 179 | |
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| 180 | initfile = open(os.path.join(location,filename),"r") |
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| 181 | lines = initfile.readlines() |
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| 182 | initfile.close() |
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| 183 | |
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| 184 | location_m1=os.path.dirname(location) |
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| 185 | location_m2=os.path.dirname(location_m1) |
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| 186 | location_m3=os.path.dirname(location_m2) |
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| 187 | |
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| 188 | h5file = filename.replace(".xmf",".h5") |
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| 189 | |
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| 190 | final_lines=[] |
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| 191 | # parsing document |
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| 192 | for line in lines : |
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| 193 | newline=line |
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| 194 | |
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| 195 | # time value must be given After the Grid statment |
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| 196 | if "Time Value" in line: |
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| 197 | newline = '' |
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| 198 | |
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| 199 | if "<Grid" in newline : |
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| 200 | newline = '<Grid name="'+self.code.upper()+' by C3Sm">\n'+ ' <Time Value=" {0}"/>\n'.format(time_id) |
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| 201 | |
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| 202 | |
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| 203 | if h5file in newline : |
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| 204 | newline = newline.replace(h5file,os.path.join(location,h5file)) |
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| 205 | |
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| 206 | if "../../../" in newline: |
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| 207 | newline=newline.replace("../../../",location_m3+"/") |
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| 208 | elif "../../" in newline: |
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| 209 | newline=newline.replace("../../",location_m2+"/") |
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| 210 | elif "../" in newline: |
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| 211 | newline=newline.replace("../",location_m1+"/") |
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| 212 | elif "./" in newline: |
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| 213 | newline=newline.replace("./",location+"/") |
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| 214 | final_lines.append(newline) |
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| 215 | |
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| 216 | |
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| 217 | newfile = open(os.path.join(new_location,new_filename), 'w') |
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| 218 | newfile.writelines(final_lines) |
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| 219 | newfile.close() |
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| 220 | |
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| 221 | |
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| 222 | |
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| 223 | |
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| 224 | if __name__ == '__main__': |
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| 225 | pass # Do tests |
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