[3723] | 1 | ### =========================================================================== |
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| 2 | ### |
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| 3 | ### Compute a mask for coastal point of NEMO domain |
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| 4 | ### |
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| 5 | ### =========================================================================== |
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| 6 | ## |
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[6190] | 7 | ## MOSAIX is under CeCILL_V2 licence. See "Licence_CeCILL_V2-en.txt" |
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| 8 | ## file for an english version of the licence and |
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| 9 | ## "Licence_CeCILL_V2-fr.txt" for a french version. |
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[3723] | 10 | ## |
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[6190] | 11 | ## Permission is hereby granted, free of charge, to any person or |
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| 12 | ## organization obtaining a copy of the software and accompanying |
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| 13 | ## documentation covered by this license (the "Software") to use, |
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| 14 | ## reproduce, display, distribute, execute, and transmit the |
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| 15 | ## Software, and to prepare derivative works of the Software, and to |
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| 16 | ## permit third-parties to whom the Software is furnished to do so, |
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| 17 | ## all subject to the following: |
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| 18 | ## |
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| 19 | ## Warning, to install, configure, run, use any of MOSAIX software or |
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| 20 | ## to read the associated documentation you'll need at least one (1) |
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| 21 | ## brain in a reasonably working order. Lack of this implement will |
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| 22 | ## void any warranties (either express or implied). Authors assumes |
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| 23 | ## no responsability for errors, omissions, data loss, or any other |
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| 24 | ## consequences caused directly or indirectly by the usage of his |
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| 25 | ## software by incorrectly or partially configured |
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| 26 | ## |
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| 27 | ## |
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[3723] | 28 | ## SVN information |
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[3725] | 29 | __Author__ = "$Author$" |
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| 30 | __Date__ = "$Date$" |
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| 31 | __Revision__ = "$Revision$" |
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| 32 | __Id__ = "$Id$" |
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| 33 | __HeadURL = "$HeadURL$" |
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[3723] | 34 | ## |
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| 35 | import netCDF4 |
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| 36 | import nemo |
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| 37 | import numpy as np |
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| 38 | import getopt, sys |
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| 39 | |
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| 40 | def usage () : |
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[3901] | 41 | texte = """Compute a mask for coastal point of NEMO domain |
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| 42 | |
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| 43 | %(prog)s usage : |
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| 44 | python %(prog)s [-h|--help] [-d|--debug] [-i <orca grid file>] [-n <perio>] |
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[3723] | 45 | -d | --debug : debug |
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| 46 | -i <file> | --input=<file> : input file (default: none) |
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| 47 | -n <perio> | --perio=<perio> : periodicity type (default: try to guess) |
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| 48 | # 1, 4, 6 : Cyclic on i dimension (generaly longitudes) |
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| 49 | # 2 : Obsolete (was symmetric condition at southern boundary ?) |
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| 50 | # 3, 4 : North fold T-point pivot (legacy ORCA2) |
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| 51 | # 5, 6 : North fold F-point pivot (ORCA1, ORCA025, ORCA2 with new grid for paleo) |
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| 52 | If <perio> is no specified, %(prog)s will try to guess it from the grid dimension |
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| 53 | example : |
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| 54 | python %(prog)s -n 4 -i ORCA2.3_coordinates_mask.nc |
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| 55 | """ |
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| 56 | print ( texte % { 'prog':sys.argv[0] } ) |
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| 57 | |
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| 58 | ## Default input parameters |
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| 59 | nperio = None |
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| 60 | GridFile = None |
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| 61 | Debug = False |
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| 62 | |
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| 63 | ## Command line options |
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| 64 | try: |
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[3901] | 65 | myopts, myargs = getopt.getopt ( sys.argv[1:], 'i:n:h', [ 'input=', 'nperio=', 'debug=', 'help' ] ) |
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[3723] | 66 | except getopt.GetoptError as cmdle : |
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| 67 | print ( "Command line error : "+str(cmdle)+"\n" ) |
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| 68 | usage () |
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| 69 | sys.exit(1) |
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| 70 | |
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| 71 | for myopt, myval in myopts : |
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| 72 | if myopt in [ '-h', '--help' ] : usage () ; sys.exit (0) ; |
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| 73 | if myopt in [ '-i', '--input' ] : GridFile = myval ; |
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| 74 | if myopt in [ '-n', '--nperio' ] : nperio = int(myval) ; |
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| 75 | if myopt in [ '-d', '--debug' ] : Debug = True ; |
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| 76 | ## |
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| 77 | if GridFile == None : |
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| 78 | print ("Input grid file not specified\n") |
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| 79 | usage ( ) |
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| 80 | sys.exit(-1) |
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| 81 | |
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[3901] | 82 | print ("Input file : " + GridFile) |
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[3723] | 83 | |
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| 84 | ## Open grid file |
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| 85 | GridFile = netCDF4.Dataset ( GridFile, "r+" ) |
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| 86 | |
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| 87 | if nperio == None : # Try to get periodicity for the grid |
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| 88 | print ("Trying to guess nperio parameter") |
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| 89 | jpoi = GridFile.dimensions["x_grid_T"].size |
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| 90 | jpoj = GridFile.dimensions["y_grid_T"].size |
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| 91 | print ("Grid dimensions: ("+str(jpoj)+", "+str(jpoi)+")") |
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| 92 | if (jpoj, jpoi) == (149, 182): |
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| 93 | print ("ORCA 2 grid found: nperio may vary for this configuration") |
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| 94 | if (jpoj, jpoi) == (332, 292): |
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| 95 | nperio = 6 |
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| 96 | print ("ORCA1 grid found" ) |
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| 97 | if (jpoj, jpoi) == (332, 362): |
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| 98 | nperio = 6 |
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| 99 | print ("eORCA1 grid found" ) |
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| 100 | #### |
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| 101 | if nperio == None : |
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| 102 | print ("Periodicity not specified and not found\n") |
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| 103 | usage ( ) |
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| 104 | sys.exit(-1) |
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| 105 | |
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| 106 | ########################################################### |
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| 107 | |
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| 108 | print ("Periodicity : "+ str(nperio) ) |
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| 109 | |
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| 110 | if nperio in [1, 4, 6] : print ("Cyclic on i dimension (generaly longitudes)") |
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| 111 | if nperio in [2, ] : print ("Obsolete (was symmetric condition at southern boundary ?)") |
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| 112 | if nperio in [3, 4 ] : print ("North fold T-point pivot (legacy ORCA2)") |
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| 113 | if nperio in [5, 6 ] : print ("North fold F-point pivot (ORCA1, ORCA025, ORCA2 with new grid for paleo)") |
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| 114 | |
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| 115 | ### |
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| 116 | OceMask = GridFile.variables["maskutil_T"] |
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| 117 | OceMask = np.array ( OceMask) |
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| 118 | |
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| 119 | OceMask = nemo.lbc ( np.int_(OceMask[:,:]), nperio=nperio, cd_type='T' ) |
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| 120 | |
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| 121 | Temp = OceMask*0 |
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| 122 | Temp[1:-1, 1:-1] = \ |
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| 123 | + OceMask[0:-2, 1:-1] + OceMask[2: , 1:-1] \ |
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| 124 | + OceMask[1:-1, 0:-2] + OceMask[1:-1, 2: ] \ |
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| 125 | + OceMask[0:-2, 0:-2] + OceMask[1:-1, 0:-2] \ |
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| 126 | + OceMask[1:-1, 1:-1] + OceMask[0:-2, 1:-1] |
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| 127 | |
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| 128 | CoastCrit = Temp.max() |
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| 129 | print ("Maximum number of neighbors : "+str(CoastCrit) ) |
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| 130 | |
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[3901] | 131 | Temp = nemo.lbc ( Temp, nperio=nperio, cd_type='T' ) |
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[3723] | 132 | |
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| 133 | OceCoastal = np.where (OceMask == 1, True, False) * np.where (Temp < CoastCrit, True, False) |
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| 134 | OceCoastal = np.where (OceCoastal, 1, 0) |
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| 135 | |
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| 136 | varOceCoastal = GridFile.createVariable ("OceCoastal", "i4", ( "y_grid_T", "x_grid_T") ) |
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| 137 | varOceCoastal.cell_measures = "area: area_grid_T" |
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| 138 | varOceCoastal.coordinates = "nav_lat_grid_T nav_lon_grid_T" |
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| 139 | |
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| 140 | varOceCoastal[:,:] = OceCoastal[:,:] |
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| 141 | |
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| 142 | |
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| 143 | GridFile.sync() |
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| 144 | GridFile.close() |
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