source: TOOLS/MOSAIX/CreateWeightsMask.bash @ 3718

Last change on this file since 3718 was 3718, checked in by omamce, 6 years ago

O.M. : add computation of runoff weights
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[3620]1#!/bin/bash
2#MSUB -r WeightsMask        # nom de la requete
3#MSUB -o Out_WeightsMask    # nom du fichier de sortie
4#MSUB -e Out_WeightsMask    # nom du fichier de sortie
5#MSUB -eo
6#MSUB -n 4              # Reservation des processeurs pour le job
7#MSUB -T 1800           # Limite temps (en secondes)
8#MSUB -q standard
9#MSUB -Q test
10#MSUB -p devcmip6
11
12### ===========================================================================
13###
14### Creates interpolation weights between ORCA and atmospher grids.
15### Interpolates ORCA mask to atmosphere grid.
16### Weight files are at OASIS-MCT format.
17###
18### Atmosphere grid may be lon/lat LMDZ or DYNAMICO icosahedron
[3627]19###
20### Documentation : https://forge.ipsl.jussieu.fr/igcmg/wiki/IPSLCM6/MOSAIX
[3620]21### ===========================================================================
22##
23##  Warning, to install, configure, run, use any of Olivier Marti's
24##  software or to read the associated documentation you'll need at least
25##  one (1) brain in a reasonably working order. Lack of this implement
26##  will void any warranties (either express or implied).
27##  O. Marti assumes no responsability for errors, omissions,
28##  data loss, or any other consequences caused directly or indirectly by
29##  the usage of his software by incorrectly or partially configured
30##  personal.
31##
[3623]32## SVN information
[3665]33#  $Author$
34#  $Date$
35#  $Revision$
36#  $Id$
[3632]37#  $HeadURL$
[3620]38
39##
40## Configuration
41## ===========================================================================
42
43#
44# Defines models
45# ==============
[3686]46OCE=ORCA2.3
47#OCE=eORCA1.2
[3620]48#OCE=ORCA025
49
[3718]50#ATM=ICO30
[3620]51#ATM=ICO40
52#ATM=ICO450
[3718]53ATM=LMD9695
[3620]54#ATM=LMD144X142
55
56#
57# Defines OCE grids to handle
58# ===========================
59ListOCEGRID="T U V"
60Listorder="1st" # " 2nd
61
62## ===========================================================================
63##
64## You should not change anything below this line ....
65##
66## ===========================================================================
67SUBMIT_DIR=$(pwd)
68
69#
70# Defines computer
71# ================
72if [[ $(hostname) = curie* ]] ; then arch=curie ; center=tgcc ; fi
73if [[ $(hostname) = irene* ]] ; then arch=irene ; center=tgcc ; fi
74PROGRAM=$(basename ${0})
75
76case ${arch} in
77    ( curie | irene )
78    set +vx
[3686]79    module purge
80    source /ccc/cont003/home/dsm/p86ipsl/.env_intel17.0.2_curie;
81    source /ccc/cont003/home/dsm/p86ipsl/.env_netcdf4.3.3.1_curie
[3620]82    R_IN=$(ccc_home -u igcmg --cccwork)/IGCM
83    TMPDIR=${SCRATCHDIR}/TMP
84    SUBMIT_DIR=${BRIDGE_MSUB_PWD:-${SUBMIT_DIR}}
85    PROGRAM=${BRIDGE_MSUB_REQNAME}
86    ;;
87    ( * )
88    exit -1
89    ;;
90esac
91
92set -x ; set -e
93
94mkdir -p ${TMPDIR}/${OCE}x${ATM} || exit 1
95cd       ${TMPDIR}/${OCE}x${ATM} || exit 1
96rm -f *
97
98#
99# Suffixes
100# ---------------------------------------------------------------------------
101Listocegrid=${ListOCEGRID~}
102
103case ${OCE} in
104    ( *ORC* )         oce=orc ; oce_domain_type=curvilinear   ;;
105esac
106case ${ATM} in
107    ( *dynamico*    ) atm=ico ; atm_domain_type=unstructured  ;;
108    ( *ICO*         ) atm=ico ; atm_domain_type=unstructured  ;;
109    ( *lmd* | *LMD* ) atm=lmd ; atm_domain_type=rectilinear   ;;
110esac
111
112#
113# Format for OASIS files : should be NetCDF3 classic or NetCDF3 64 bits
114# ---------------------------------------------------------------------------
115FL_FMT=64bit
116
117
118cp ${SUBMIT_DIR}/bin/interpol.exe                 .
119cp ${SUBMIT_DIR}/update_xml.py                    .
120
121##
122## NEMO T point towards ATM - 1st order
123## ===========================================================================
124cp ${R_IN}/OCE/NEMO/${OCE}/${OCE}_coordinates_mask.nc  .
[3639]125cp ${R_IN}/ATM/GRID/${ATM}_grid.nc .
[3620]126
127ln -s ${OCE}_coordinates_mask.nc  oce_grid.nc
128ln -s ${ATM}_grid.nc              atm_grid.nc
129
130echo ${Green}"${OCE} T toward ${ATM} - 1storder"${Norm}
131cp ${SUBMIT_DIR}/iodef_oce_to_atm.xml   iodef.xml
132
133python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'   -k name  -v maskutil_T
134python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${oce_domain_type}
135python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${atm_domain_type}
136python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name  -v maskutil_T
137python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_t${oce}_to_t${atm}_1storder
138python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${OCE} mask interpolated to ${ATM}"
139python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${oce_domain_type}
140python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${atm_domain_type}
141python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t 1
142python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${oce_domain_type}
143python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${atm_domain_type}
144python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_t${oce}_to_t${atm}_1storder.nc
145python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
146
147cp iodef.xml iodef_t${oce}_to_t${atm}_1storder.xml
148
149time /usr/bin/time ccc_mprun ./interpol.exe --mask_src=yes --mask_dst=no
150
151##
152## Correct spurious values (extremes)
153## ===========================================================================
154cat <<EOF > correction_masque.nco
155where (OceFrac <   0.00001 )  OceFrac=OceFrac.get_miss() ;
156where (OceFrac >   0.99999 )  OceFrac=1.0 ;
157OceFrac.delete_miss() ;
158// Fill masked values to land values
159where (OceFrac >  1.0 )  OceFrac=0.0 ;
160where (OceFrac <  0.0 )  OceFrac=0.0 ;
161EOF
[3639]162ncap2 --history --overwrite --script-file correction_masque.nco dia_t${oce}_to_t${atm}_1storder.nc tmp_dia_t${oce}_to_t${atm}_1storder.nc ; mv tmp_dia_t${oce}_to_t${atm}_1storder.nc dia_t${oce}_to_t${atm}_1storder.nc
163ncatted --history -a missing_value,OceFrac,d,,"" -a _FillValue,OceFrac,d,,"" dia_t${oce}_to_t${atm}_1storder.nc
[3620]164
165##
166##  Creates mask on ATM grid
167## ===========================================================================
168cp dia_t${oce}_to_t${atm}_1storder.nc  dia_t${oce}_to_t${atm}_1storder_mask.nc
[3686]169ncks --alphabetize --history --overwrite --variable OceFrac dia_t${oce}_to_t${atm}_1storder_mask.nc  ${ATM}_grid_maskFrom_${OCE}.nc
170ncks --alphabetize --history --append    --variable aire    atm_grid.nc                              ${ATM}_grid_maskFrom_${OCE}.nc
171[[ ${atm} = *ico* ]] && ncks --alphabetize --history --append --variable bounds_lon,bounds_lat atm_grid.nc                              ${ATM}_grid_maskFrom_${OCE}.nc
[3620]172
173cat <<EOF > creation_masque.nco
174where (OceFrac >  0.0 )  OceFrac=1 ;
175where (OceFrac <= 0.0 )  OceFrac=0 ;
176EOF
[3639]177ncap2 --history --overwrite --script-file creation_masque.nco dia_t${oce}_to_t${atm}_1storder_mask.nc tmp_dia_t${oce}_to_t${atm}_1storder_mask.nc ; mv tmp_dia_t${oce}_to_t${atm}_1storder_mask.nc dia_t${oce}_to_t${atm}_1storder_mask.nc
[3686]178ncrename --history --variable OceFrac,OceMask dia_t${oce}_to_t${atm}_1storder_mask.nc
[3620]179
[3686]180ncks --alphabetize --history --append --variable OceMask dia_t${oce}_to_t${atm}_1storder_mask.nc   ${ATM}_grid_maskFrom_${OCE}.nc
[3620]181
[3718]182##
183## Create mask of coastal ATM point
184## ===========================================================================
185cat <<EOF > coastal.nco
186AtmCoastal = OceFrac * 0.0 ;
187where (OceFrac > 0.0 && OceFrac < 1.0 )  AtmCoastal = 1.0 ;
188EOF
189ncap2 --history --overwrite --script-file coastal.nco ${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_coastal_maskFrom_${OCE}.nc
190ncks --history --append --variable AtmCoastal ${ATM}_coastal_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
191rm ${ATM}_coastal_maskFrom_${OCE}.nc
[3620]192
193##
194## NEMO, other case, towards ATM
195## ===========================================================================
196for order in ${Listorder} ; do
197    case ${order} in
198        ( 1st ) num_order=1 ;;
199        ( 2nd ) num_order=2 ;;
200    esac
201   
202    for OCEGRID in ${ListOCEGRID} ; do
203        ocegrid=${OCEGRID~}
204
205        if [[ !( ${order} = 1st && ${OCEGRID} = T ) ]] ; then
206
207            echo ${Green}"${OCE} ${OCEGRID} toward ${ATM} - ${order}order"${Norm}
208
209            python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'   -k name  -v maskutil_${OCEGRID}
210            python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${oce_domain_type}
211            python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${atm_domain_type}
212            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_src"]/field[@id="mask_source"]' -k name  -v maskutil_${OCEGRID}
213            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_${ocegrid}${oce}_to_t${atm}_${order}order
214            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${OCE} mask interpolated to ${ATM}"
215            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${oce_domain_type}
216            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${atm_domain_type}
217            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t ${num_order}
218            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${oce_domain_type}
219            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${atm_domain_type}
220            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v ${num_order}
221            python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_${ocegrid}${oce}_to_t${atm}_${order}order.nc
222            cp iodef.xml iodef_${ocegrid}${oce}_t${atm}_${order}order.xml
223           
224            time /usr/bin/time ccc_mprun ./interpol.exe --mask_src=yes --mask_dst=yes
225        fi
226       
227    done
228done
229
230##
231## ATM towards NEMO points
232## ===========================================================================
233cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml           iodef.xml
234
235python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${atm_domain_type}
236python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${oce_domain_type}
237python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${ATM} mask interpolated to ${OCE}"
238python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${atm_domain_type}
239python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${oce_domain_type}
240python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${atm_domain_type}
241python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${oce_domain_type}
242           
243for order in ${Listorder} ; do
244    case ${order} in
245        ( 1st ) num_order=1 ;;
246        ( 2nd ) num_order=2 ;;
247    esac
248    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v ${num_order}
249    python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t ${num_order}   
250   
251    for OCEGRID in ${ListOCEGRID} ; do
252        ocegrid=${OCEGRID~}
253
254        echo ${Green}"${ATM} toward ${OCE} ${OCEGRID} - ${order}order"${Norm}
255        python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_dst"]/field[@id="mask_dst"]'   -k name  -v mask_${OCEGRID}
256        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="file_dst"]/field[@id="mask_dest"]'   -k name  -v mask_${OCEGRID}
257        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_t${atm}_to_${ocegrid}${oce}_${order}order
258        python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_t${atm}_to_${ocegrid}${oce}_${order}order.nc
259        cp iodef.xml iodef_t${atm}_to_${ocegrid}${oce}_${order}order.xml
260       
261        time /usr/bin/time ccc_mprun ./interpol.exe --mask_src=yes --mask_dst=yes
262       
263    done
264done
265
266##
[3718]267## ATM towards NEMO points - runoff
268## ===========================================================================
269cp ${SUBMIT_DIR}/iodef_atm_to_oce.xml           iodef.xml
270python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_src"]'                   -k type  -v ${atm_domain_type}
271python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/domain_definition/domain[@id="domain_dst"]'                   -k type  -v ${oce_domain_type}
272python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="title"]'       -t "${ATM} coastal mask interpolated to ${OCE}"
273python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="source_grid"]' -t ${atm_domain_type}
274python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="dest_grid"]'   -t ${oce_domain_type}
275python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_src"]'                    -k type  -v ${atm_domain_type}
276python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]'                    -k type  -v ${oce_domain_type}
277python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k order -v 1
278python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]/variable[@name="order"]'       -t 1
279python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]'                         -k name  -v ${ATM}_grid_maskFrom_${OCE}
280python update_xml.py -i iodef.xml -n 'context[@id="interpol_read"]/file_definition/file[@id="file_src"]/field[@id="mask_src"]'   -k name  -v AtmCoastal
281python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/file_definition/file[@id="dia"]'                               -k name  -v dia_c${atm}_to_t${oce}_1storder
282python update_xml.py -i iodef.xml -n 'context[@id="interpol_run"]/domain_definition/domain[@id="domain_dst"]/interpolate_domain' -k weight_filename -v rmp_c${atm}_to_t${oce}_1storder.nc
283
284cp iodef.xml iodef_c${atm}_to_t${oce}_1storder.xml
285
286time /usr/bin/time ccc_mprun ./interpol.exe --mask_src=yes --mask_dst=yes
287
288##
[3620]289## Change all NetCDF files to NetCDF 3 format (needed for OASIS)
290## ===========================================================================
291for InFile in *.nc ; do
[3718]292    mv ${InFile} tmp_${InFile}
293    ncks --alphabetize --fl_fmt=${FL_FMT} --history  tmp_${InFile}  ${InFile}
[3620]294done
295
296##
297## Add time axis and coordinates information
298## (needed if files need to be read by XIOS)
299## ===========================================================================
300if [[ ${atm} = ico ]] ; then
301    cat <<EOF > add_time.nco
302defdim("time_counter",1) ;
303OceFrac [time_counter,cell] = OceFrac (:) ;
304OceMask [time_counter,cell] = OceMask (:) ;
305EOF
[3686]306    ncap2 --overwrite --history --script-file add_time.nco   ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
307    ncks --alphabetize --overwrite --mk_rec time_counter ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
[3639]308    ncatted --history \
[3620]309            -a coordinates,OceFrac,c,c,"time_counter cell" \
310            -a coordinates,OceMask,c,c,"time_counter cell" \
311            -a coordinates,aire,c,c,"time_counter cell"    ${ATM}_grid_maskFrom_${OCE}.nc
312fi
313if [[ ${atm} = lmd ]] ; then
314    cat <<EOF > add_time.nco
315defdim("time_counter",1) ;
316OceFrac [time_counter,lat,lon] = OceFrac (:,:) ;
317OceMask [time_counter,lat,lon] = OceMask (:,:) ;
318EOF
[3686]319    ncap2 --overwrite --history --script-file add_time.nco   ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
320    ncks --alphabetize --overwrite --mk_rec time_counter ${ATM}_grid_maskFrom_${OCE}.nc tmp_${ATM}_grid_maskFrom_${OCE}.nc ; mv tmp_${ATM}_grid_maskFrom_${OCE}.nc ${ATM}_grid_maskFrom_${OCE}.nc
[3639]321    ncatted --history \
[3620]322            -a coordinates,OceFrac,c,c,"time_counter lat lon" \
323            -a coordinates,OceMask,c,c,"time_counter lat lon" \
324            -a coordinates,aire,c,c,"time_counter lat lon"    ${ATM}_grid_maskFrom_${OCE}.nc
325fi
326
327##
328## Add some information in file headers
329## ===========================================================================
330
331UUID=$(uuid)
332NCO="$(ncks --version |& tail -1|sed 's/ncks //')"
333PYTHON_VER=$( python -i -c "import sys ; print (sys.version.split(' ')[0])" )
334for InFile in *${oce}_to_*${atm}_*.nc *${atm}_to_*${oce}_*.nc ${ATM}_grid_maskFrom_${OCE}.nc ; do
[3639]335    ncatted --history \
[3620]336            --attribute uuid,global,d,,                                           \
337            --attribute LongName,global,d,,                                       \
338            --attribute nco_openmp_thread_number,global,d,,                       \
339            --attribute Conventions,global,o,c,"CF-1.6"                           \
340            --attribute source,global,o,c,"IPSL Earth system model"               \
341            --attribute group,global,o,c,"ICMC IPSL Climate Modelling Center"     \
342            --attribute Institution,global,o,c,"IPSL https://www.ipsl.fr"         \
343            --attribute Ocean,global,o,c,"${OCE} https://www.nemo-ocean.eu"       \
344            --attribute Atmosphere,global,o,c,"${ATM} http://lmdz.lmd.jussieu.fr" \
345            --attribute production,global,o,c,"$(finger ${LOGNAME} | head -1 | awk '{print $4, $5}') " \
346            --attribute originalFiles,global,o,c,"${OCE}_coordinates_mask.nc ${ATM}_grid_mask.nc"      \
347            --attribute associatedFiles,global,o,c,"grids_${OCE}x${ATM}.nc areas_${OCE}x${ATM}.nc masks_${OCE}x${ATM}.nc" \
348            --attribute directory,global,o,c,"$(pwd)"                             \
349            --attribute description,global,o,c,"Fields needed by OASIS-MCT"       \
350            --attribute title,global,o,c,"${InFile}.nc"                           \
351            --attribute Program,global,o,c,"Generated by ${PROGRAM}"              \
352            --attribute timeStamp,global,o,c,"$(date)"                            \
353            --attribute uuid,global,o,c,"${UUID}"                                 \
354            --attribute HOSTNAME,global,o,c,"$(hostname)"                         \
355            --attribute LOGNAME,global,o,c,"$(whoami)"                            \
356            --attribute NCO,global,o,c,"NCO netCDF Operator ${NCO} http://nco.sourceforge.net" \
357            --attribute Python,global,o,c,"Python version ${PYTHON_VER}"          \
358            --attribute OS,global,o,c,"$(uname -o)"                               \
359            --attribute release,global,o,c,"$(uname -r)"                          \
360            --attribute hardware,global,o,c,"$(uname -i)"                         \
361            --attribute directory,global,o,c,"$(pwd)"                             \
[3624]362            --attribute description,global,o,c,"Generated with XIOS http://forge.ipsl.jussieu.fr/ioserver and MOSAIX https://forge.ipsl.jussieu.fr/igcmg/browser/TOOLS/MOSAIX" \
[3620]363            --attribute Comment,global,o,c,"Preliminary attempt - Do not trust !" \
[3665]364            --attribute SVN_Author,global,o,c,"$Author$"                 \
365            --attribute SVN_Date,global,o,c,"$Date$"                            \
366            --attribute SVN_Revision,global,o,c,"$Revision$"               \
367            --attribute SVN_Id,global,o,c,"$Id$"                                \
[3620]368            ${InFile}
369done
370
371
372##
373## Update and complete weights file to fit OASIS requested format
374## ===========================================================================
375cat <<EOF > add_dim.nco
376defdim("num_wgts",1) ;
377weight[n_weight, num_wgts] = weight ;
378EOF
379
380for file in rmp_*${oce}_to_*${atm}_*.nc rmp_*${atm}_to_*${oce}_*.nc ; do
381    mv ${file} xios_${file}
[3639]382    ncap2 --fl_fmt=${FL_FMT} --history --script-file add_dim.nco xios_${file} ${file}
[3620]383   
[3639]384    ncrename --history --dimension n_weight,num_links   ${file}
385    ncrename --history --variable  src_idx,src_address  ${file}
386    ncrename --history --variable  dst_idx,dst_address  ${file}
387    ncrename --history --variable  weight,remap_matrix  ${file}
[3620]388    case ${file} in
[3639]389        ( *1storder.nc ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 1st order"  ${file} ;;
390        ( *2ndorder.nc ) ncatted --history --attribute map_method,global,o,c,"Conservative Remapping - 2nd order"  ${file} ;;
[3620]391    esac
[3639]392    ncatted --history --attribute conventions,global,o,c,"SCRIP"   ${file}
393    ncatted --history --attribute normalization,global,o,c,"none"  ${file}
[3620]394   
395    case ${file} in
396        ( rmp_*${oce}_to_t${atm}_* )
[3639]397        ncatted --history \
[3620]398                --attribute title,global,o,c,"Weights ${OCE} to ${ATM}" \
399                --attribute source_grid,global,o,c,"${oce_domain_type}" \
400                --attribute dest_grid,global,o,c,"${atm_domain_type}"   \
401                ${file} 
402        ;;
403        ( rmp_*${atm}_to_*${oce}_* )
[3639]404        ncatted --history \
[3620]405                --attribute title,global,o,c,"Weights ${ATM} to ${OCE}" \
406                --attribute source_grid,global,o,c,"${atm_domain_type}" \
407                --attribute dest_grid,global,o,c,"${oce_domain_type}"   \
408                ${file}
409        ;;
410    esac
411done
412
413##
[3639]414## Add missing variables in rmp files
415## ===========================================================================
416for OGRID in ${ListOCEGRID} ; do
[3718]417    for AGRID in T C ; do
418        for order in ${Listorder} ; do
419            ogrid=${OGRID~}
420            agrid=${AGRID~}
[3639]421       
[3718]422            file_o_to_a=rmp_${ogrid}${oce}_to_${agrid}${atm}_${order}order.nc
423            file_a_to_o=rmp_${agrid}${atm}_to_${ogrid}${oce}_${order}order.nc
424           
425            cat <<EOF >add_varoce.nco
[3639]426defdim ("src_grid_size"   , \$x_grid_${OGRID}.size*\$y_grid_${OGRID}.size) ;
427defdim ("src_grid_corners", 4) ;
428defdim ("src_grid_rank"   , 2) ;
429//
430src_grid_dims[src_grid_rank] = { \$y_grid_${OGRID}.size, \$x_grid_${OGRID}.size } ;
431//
432src_grid_center_lat [src_grid_size] =  0.0d ;
433src_grid_center_lon [src_grid_size] =  0.0d ;
434src_grid_center_lat (:) = nav_lat_grid_${OGRID}(:,:)   ;
435src_grid_center_lon (:) = nav_lon_grid_${OGRID}(:,:)   ;
436//
437src_grid_corner_lat [src_grid_size, src_grid_corners] = 0.0d ;
438src_grid_corner_lon [src_grid_size, src_grid_corners] = 0.0d ;
439src_grid_corner_lat(:,:) = bounds_lat_grid_${OGRID}(:,:,:) ;
440src_grid_corner_lon(:,:) = bounds_lon_grid_${OGRID}(:,:,:) ;
441//
442src_grid_imask [src_grid_size] =    0 ;
443src_grid_area  [src_grid_size] = 0.0d ;
444src_grid_frac  [src_grid_size] = 1.0d ;
445src_grid_imask (:) = 1 - mask_${OGRID}(:,:) ;
446src_grid_imask.int() ;
447src_grid_area  (:) = area_grid_${OGRID}(:,:) ;
448EOF
449
[3718]450            [[ -f ${file_o_to_a} ]] && ncap2 --history --append --script-file add_varoce.nco oce_grid.nc ${file_o_to_a}
451            sed --in-place "s/src_/dst_/g" add_varoce.nco
452            [[ -f ${file_a_to_o} ]] && ncap2 --history --append --script-file add_varoce.nco oce_grid.nc ${file_a_to_o}
453           
454            if [[ ${atm} = ico ]] ; then
455                cat <<EOF >add_varatm.nco
[3639]456defdim ("dst_grid_size"   , \$cell.size) ;
457defdim ("dst_grid_corners", 6) ;
458defdim ("dst_grid_rank"   , 2) ;
459//
460dst_grid_dims[dst_grid_rank] = { \$cell.size, 1 } ;
461//
462dst_grid_center_lat [dst_grid_size] =  0.0d ;
463dst_grid_center_lon [dst_grid_size] =  0.0d ;
464dst_grid_center_lat (:) = lat(:)   ;
465dst_grid_center_lon (:) = lon(:)   ;
466//
467dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ;
468dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
469dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
470dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
471//
472dst_grid_imask [dst_grid_size] =    0 ;
473dst_grid_area  [dst_grid_size] = 0.0d ;
474dst_grid_frac  [dst_grid_size] = 1.0d ;
475dst_grid_imask (:) = 1 - OceMask(0,:) ;
476dst_grid_imask.int() ;
477dst_grid_area  (:) = aire(:) ;
478EOF
[3718]479                if [[ -f ${file_o_to_a} ]] ; then
480                    ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}.nc ${file_o_to_a}
481                    ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${file_o_to_a} rmp_tmp.nc
482                    mv rmp_tmp.nc ${file_o_to_a}
483                fi
484                   
485                sed --in-place "s/dst_/src_/g" add_varatm.nco
486                if [[ -f ${file_a_to_o} ]] ; then
487                    ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}.nc ${file_a_to_o}
488                    ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${file_a_to_o} rmp_tmp.nc
489                    mv rmp_tmp.nc ${file_a_to_o}
490                fi
491            fi
492            if [[ ${atm} = lmd ]] ; then
493                cat <<EOF >add_varatm.nco
[3639]494defdim ("dst_grid_size"   , \$lon.size*\$lat.size) ;
495defdim ("dst_grid_corners", 4) ;
496defdim ("dst_grid_rank"   , 2) ;
497//
498dst_grid_dims[dst_grid_rank] = { \$lat.size, \$lon.size } ;
499//
500dst_grid_center_lat [dst_grid_size] =  0.0d ;
501dst_grid_center_lon [dst_grid_size] =  0.0d ;
502lat0lon[lat,lon] = lat(:)+0*lon(:) ;
503lon0lat[lat,lon] = lon(:)+0*lat(:) ;
504dst_grid_center_lat (:) = lat0lon(:,:)   ;
505dst_grid_center_lon (:) = lon0lat(:,:)   ;
506//
507//dst_grid_corner_lat [dst_grid_size, dst_grid_corners] = 0.0d ; // Not available for LMDZ lon/lat grid
508//dst_grid_corner_lon [dst_grid_size, dst_grid_corners] = 0.0d ;
509//dst_grid_corner_lat(:,:) = bounds_lat(:,:) ;
510//dst_grid_corner_lon(:,:) = bounds_lon(:,:) ;
511//
512dst_grid_imask [dst_grid_size] =    0 ;
513dst_grid_area  [dst_grid_size] = 0.0d ;
514dst_grid_frac  [dst_grid_size] = 1.0d ;
515dst_grid_imask (:) = 1 - OceMask(0,:,:) ;
516dst_grid_imask.int() ;
517dst_grid_area  (:) = aire(:,:) ;
518dst_grid_frac (:)  = OceFrac(0,:,:) ;
519EOF
[3718]520                if [[ -f ${file_o_to_a} ]] ; then
521                    ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}.nc ${file_o_to_a}
522                    ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_corner_lon,src_grid_corner_lat,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_area,dst_grid_imask ${file_o_to_a} rmp_tmp.nc
523                    mv rmp_tmp.nc ${file_o_to_a}
524                fi
525               
526                sed --in-place "s/dst/src/g" add_varatm.nco
527                if [[ -f ${file_a_to_o} ]] ; then
528                    ncap2 --history --append --script-file add_varatm.nco ${ATM}_grid_maskFrom_${OCE}.nc ${file_a_to_o}
529                    ncks --alphabetize --history --overwrite --variable src_address,dst_address,remap_matrix,src_grid_dims,src_grid_center_lat,src_grid_center_lon,src_grid_area,src_grid_imask,dst_grid_dims,dst_grid_center_lat,dst_grid_center_lon,dst_grid_corner_lon,dst_grid_corner_lat,dst_grid_area,dst_grid_imask ${file_a_to_o} rmp_tmp.nc
530                    mv rmp_tmp.nc ${file_a_to_o}
531                fi
532            fi
533        done
[3639]534    done
535done
536
537##
[3620]538## Save results
539## ===========================================================================
540cp ${ATM}_grid_maskFrom_${OCE}.nc ${SUBMIT_DIR}
[3718]541
542cp rmp_c${atm}_to_t${oce}_${order}order.nc ${SUBMIT_DIR}/rmp_c${ATM}_to_t${OCE}_1storder.nc
543cp dia_c${atm}_to_t${oce}_${order}order.nc ${SUBMIT_DIR}/dia_c${ATM}_to_t${OCE}_1storder.nc
544
[3620]545for order in ${Listorder}
546do
547    cp dia_t${oce}_to_t${atm}_${order}order.nc ${SUBMIT_DIR}/dia_t${OCE}_to_t${ATM}_${order}order.nc
548    cp rmp_t${oce}_to_t${atm}_${order}order.nc ${SUBMIT_DIR}/rmp_t${OCE}_to_t${ATM}_${order}order.nc
[3718]549 
[3620]550    for grid in ${Listocegrid} ; do
551        cp rmp_t${atm}_to_${grid}${oce}_${order}order.nc ${SUBMIT_DIR}/rmp_t${ATM}_to_${grid}${OCE}_${order}order.nc
552        cp dia_t${atm}_to_${grid}${oce}_${order}order.nc ${SUBMIT_DIR}/dia_t${ATM}_to_${grid}${OCE}_${order}order.nc
553    done
554done
555
556##
557## Creates and save auxiliary files for OASIS
558## ===========================================================================
559bash ${SUBMIT_DIR}/CreateOasisGrids.bash --oce ${OCE} --atm ${ATM}
560
561cp areas_${OCE}x${ATM}.nc ${SUBMIT_DIR}
562cp grids_${OCE}x${ATM}.nc ${SUBMIT_DIR}
563cp masks_${OCE}x${ATM}.nc ${SUBMIT_DIR}
564
565
566## ===========================================================================
567##
568##                               That's all folk's !!!
569##
570## ===========================================================================
571
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