[2136] | 1 | #!/bin/bash |
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| 2 | ## |
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| 3 | ## Job permettant de recreer une partie du config.card d'une simulation |
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| 4 | ## Champs vises : JobName / DateBegin / DateEnd / Calendar |
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| 5 | ## |
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| 6 | |
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| 7 | # Prend en argument un fichier contenant une liste de simulations |
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| 8 | # cree pour chacune son config.card |
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| 9 | # Ex : ./create_config_card.job liste_simul_fichier_param_test1.txt liste_fichier_dmnfs |
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| 10 | # Ex : ./create_config_card.job liste_simul_param_SL.txt /cscratch/cont003/labetoul/FROM_CCRT_INFORMATIONS_DMNFS/information_dmnfs_2012-03-21 |
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| 11 | |
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| 12 | |
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| 13 | LISTE_SIMUL=${1} |
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| 14 | LISTE_DMNFS=${2} |
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| 15 | |
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| 16 | # ---- |
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| 17 | export JOB_DIR=${JOB_DIR:-${TMP_MIGR_DATA}} |
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| 18 | export IGCM_DEM=${IGCM_DEM:-${SCRATCHDIR}/IGCM_DEM} |
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| 19 | export IGCM_TMP=${IGCM_TMP:-${IGCM_DEM}/tmp} |
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| 20 | mkdir -p ${IGCM_DEM} |
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| 21 | mkdir -p ${IGCM_TMP} |
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| 22 | clean_tmp=${clean_tmp:-yes} |
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| 23 | EXE_DIR=$(dirname ${0}) |
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| 24 | SCRIPT_NAME=$(basename ${0} ) |
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| 25 | source ${EXE_DIR}/DEM_utilities.sh |
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| 26 | |
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| 27 | # gpdebug : verif si le present script a ete execute jusqu'au bout ######### |
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| 28 | MonitoringInfo="${SCRIPT_NAME}-->OK" |
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| 29 | generalMonitoring "$MonitoringInfo" |
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| 30 | |
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| 31 | DEM_log -0 "Demarrage de ${SCRIPT_NAME}" |
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| 32 | |
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| 33 | # gpdebug : on augmente la liste des proc à détruire en cas d'erreur bloquante du présent proc |
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| 34 | export listPID="$$ ${listPID}" ######### |
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| 35 | |
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| 36 | cd ${JOB_DIR} |
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| 37 | # ---- |
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| 38 | |
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| 39 | DEM_log -0 "LISTE_SIMUL : ${LISTE_SIMUL}" |
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| 40 | DEM_log -0 "LISTE_DMNFS : ${LISTE_DMNFS}" |
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| 41 | |
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| 42 | [[ -f ${IGCM_DEM}/config_card.liste ]] && rm ${IGCM_DEM}/config_card.liste |
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| 43 | |
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| 44 | |
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| 45 | for PATH_SIMUL_FULL in `awk '{print $0}' ${LISTE_SIMUL}` ; do |
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| 46 | |
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| 47 | DEM_log -3 PATH_SIMUL_FULL : ${PATH_SIMUL_FULL} |
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| 48 | PATH_SIMUL_SHORT=$(echo ${PATH_SIMUL_FULL} | sed "s%${INPUT_DMF_DATA}/%%" ) # gpdebug : added |
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| 49 | DEM_log -3 PATH_SIMUL_SHORT : ${PATH_SIMUL_SHORT} |
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| 50 | |
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| 51 | IGCM_DEM_SIMU=${IGCM_DEM}/${PATH_SIMUL_SHORT} |
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| 52 | mkdir -p ${IGCM_DEM_SIMU} |
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| 53 | rm -rf ${IGCM_DEM_SIMU}/* |
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| 54 | |
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[2160] | 55 | STORE_CP=${IGCM_DEM_SIMU}/store_cp |
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| 56 | mkdir -p ${STORE_CP} |
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| 57 | |
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| 58 | ### note dans cette version on ne gere pas les fichiers Monitoring ils sont deja la ou il faut et comme il faut |
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[2136] | 59 | # on recherche le nom du job |
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| 60 | JobName="" |
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| 61 | |
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| 62 | |
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[2160] | 63 | # Etablir la liste des fichiers d'Analyse |
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| 64 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Analyse | awk '{print $3}' | sort >> ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 65 | awk -F/ '{if ($(NF)=="Analyse") print $0} ' ${IGCM_TMP}/${$}.cp_analyse_files.list > ${STORE_CP}/cp_files.list |
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| 66 | rm -f ${IGCM_TMP}/${$}.cp_analyse_files.list |
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| 67 | |
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| 68 | |
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[2136] | 69 | # Etablir la liste des fichiers de restart |
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| 70 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep RESTART | awk '{print $2 " " $3}' | grep -e '.*/RESTART/.*\..*' |grep -v "jnl" | sort >> ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 71 | |
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| 72 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires au repetoire RESTART/ |
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| 73 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt ` ; do |
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| 74 | dir=$( echo $file | sed -e "s%.*RESTART/%%") |
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| 75 | testdir=$(dirname ${dir}) |
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| 76 | if [ $testdir != "." ]; then |
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| 77 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_restart_files_config.txt) >> ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt |
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| 78 | fi |
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| 79 | done |
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| 80 | if [ -f ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt ]; then |
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| 81 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_TMP}/${$}.liste_no_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 82 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 83 | fi |
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| 84 | |
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| 85 | # Etablir la liste des fichiers output |
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| 86 | grep ${PATH_SIMUL_FULL}/ ${LISTE_DMNFS} | grep Output | awk '{print $2 " " $3}' | grep -e '.*/Output/.*\.nc$' | sort >> ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 87 | # Retirons de la liste les fichiers que l'on n'attends pas, en particulier si il y a des sous-repertoires aux repetoires Output/*/ |
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| 88 | for file in `awk '{print $2}' ${IGCM_TMP}/${$}.liste_output_files_config.txt ` ; do |
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| 89 | dir=$( echo $file | sed -e "s%.*Output/[^/]*/%%") |
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| 90 | testdir=$(dirname ${dir}) |
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| 91 | if [ $testdir != "." ]; then |
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| 92 | echo $( grep ${file} ${IGCM_TMP}/${$}.liste_output_files_config.txt ) >> ${IGCM_TMP}/${$}.liste_no_output_files_config.txt |
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| 93 | fi |
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| 94 | done |
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| 95 | if [ -f ${IGCM_TMP}/${$}.liste_no_output_files_config.txt ]; then |
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| 96 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_no_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 97 | mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_output_files_config.txt |
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| 98 | fi |
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| 99 | |
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| 100 | # Lecture du nom du job |
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| 101 | JobName=`awk -F/ '{if (NR==1) print $(NF-2)}' ${IGCM_TMP}/${$}.liste_restart_files_config.txt` |
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| 102 | |
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| 103 | DEM_log -2 JobName ${JobName} |
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| 104 | |
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| 105 | # traitons les listes de restart pour conserver ceux qui correspondent au format $JobName_restart_date_date.tar et $JobName_date_date_restart.tar |
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| 106 | # on enleve les fichiers qui ne sont pas en .tar |
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| 107 | grep -w "tar" ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt; mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 108 | # dans ces fichiers on enleve ceux qui n'ont pas la chaine "restart" (attention suivant d'ou provient la simulation (pack ou libigcm) la chaine restart n'est pas situee au meme endroite |
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| 109 | grep "restart" ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt; mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 110 | # dans ces fichiers on enleve ceux qui n'ont pas le jobName |
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| 111 | grep $JobName ${IGCM_TMP}/${$}.liste_restart_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt; mv ${IGCM_TMP}/${$}.info_tmp.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 112 | |
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| 113 | mv ${IGCM_TMP}/${$}.liste_restart_files_config.txt ${IGCM_DEM_SIMU}/liste_restart_files_config.txt |
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| 114 | |
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| 115 | # Maintenant que nous avons JobName verifions que tous les fichiers de Output sont bien du type JobName_date_* |
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| 116 | sed -e "s%.*/${JobName}_\([0-9]\{8\}\)_%%" ${IGCM_TMP}/${$}.liste_output_files_config.txt > ${IGCM_TMP}/${$}.info_tmp.txt |
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| 117 | cat ${IGCM_TMP}/${$}.info_tmp.txt |grep "/" > ${IGCM_TMP}/${$}.info_tmp_bis.txt |
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| 118 | join -t % -v 1 ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.info_tmp_bis.txt > ${IGCM_TMP}/${$}.output.tmp |
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| 119 | sort -k 2 ${IGCM_TMP}/${$}.output.tmp > ${IGCM_TMP}/${$}.output_bis.tmp |
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| 120 | mv ${IGCM_TMP}/${$}.output_bis.tmp ${IGCM_DEM_SIMU}/liste_output_files_config.txt |
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| 121 | |
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| 122 | |
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| 123 | ## Recherche de DateBegin et DateEnd pour les Restarts |
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| 124 | typeRestart=`awk -F_ '{if (NR==1) print $(NF)}' ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ` |
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| 125 | echo $typeRestart |
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| 126 | if [[ "$typeRestart" == "restart.tar" ]]; then |
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| 127 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 128 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" | sed -e 's/_restart.tar//g' ) |
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| 129 | DateBegin_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 130 | |
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| 131 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 132 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" | sed -e 's/_restart.tar//g' ) |
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| 133 | DateEnd_Restart=$( echo ${extract_date_file}| sed 's/.*_\([0-9]\{8\}\).*$/\1/g' ) |
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| 134 | else |
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| 135 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 136 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_restart_//" | sed -e 's/\.tar//g' ) |
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| 137 | DateBegin_Restart=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 138 | |
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| 139 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_restart_files_config.txt ) |
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| 140 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_restart_//" | sed -e 's/\.tar//g' ) |
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| 141 | DateEnd_Restart=$( echo ${extract_date_file}| sed 's/.*_\([0-9]\{8\}\).*$/\1/g' ) |
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| 142 | |
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| 143 | fi |
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| 144 | |
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| 145 | |
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| 146 | # Recherche de DateBegin et DateEnd pour les Output |
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| 147 | first_file=$( head -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 148 | extract_date_file=$( echo ${first_file} | sed -e "s/.*${JobName}_//" ) |
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| 149 | DateBegin_Output=$( echo ${extract_date_file}| sed 's/\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 150 | |
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| 151 | last_file=$( tail -n 1 ${IGCM_DEM_SIMU}/liste_output_files_config.txt ) |
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| 152 | extract_date_file=$( echo ${last_file} | sed -e "s/.*${JobName}_//" ) |
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| 153 | DateEnd_Output=$( echo ${extract_date_file}| sed 's/.*_\([0-9]\{8\}\)_.*$/\1/g' ) |
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| 154 | |
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| 155 | DateBegin=${DateBegin_Restart} |
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| 156 | DateEnd=${DateEnd_Restart} |
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| 157 | |
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| 158 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 159 | DEM_log -2 "DateBegin_Output DateEnd_Output : ${DateBegin_Output} ${DateEnd_Output}" |
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| 160 | DEM_log -2 "DateBegin_Restart DateEnd_Restart : ${DateBegin_Restart} ${DateEnd_Restart}" |
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| 161 | |
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| 162 | DateBegin=$( DEM_min ${DateBegin_Output} ${DateBegin} ) |
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| 163 | DateEnd=$( DEM_max ${DateEnd_Output} ${DateEnd} ) |
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| 164 | |
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| 165 | DEM_log -2 "DateBegin DateEnd : ${DateBegin} ${DateEnd}" |
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| 166 | |
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| 167 | [[ "${clean_tmp}" = "yes" ]] && rm -f ${IGCM_TMP}/${$}.config_name ${IGCM_TMP}/${$}.liste_output_files_config.txt ${IGCM_TMP}/${$}.liste_restart_files_config.txt |
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| 168 | |
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| 169 | rm -f ${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 170 | cat<<EOD>${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 171 | JobName=${JobName} |
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| 172 | DateBegin=${DateBegin} |
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| 173 | DateEnd=${DateEnd} |
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| 174 | PATH_SIMUL_FULL=${PATH_SIMUL_FULL} |
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| 175 | IGCM_DEM_SIMU=${IGCM_DEM_SIMU} |
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| 176 | EOD |
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| 177 | |
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| 178 | echo "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone" >> ${IGCM_DEM}/config_card.liste |
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| 179 | |
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| 180 | DEM_log -1 "${IGCM_DEM_SIMU}/config_card_${JobName} ListToBeDone >> ${IGCM_DEM}/config_card.liste" |
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| 181 | |
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| 182 | #si la liste des fichiers d'output est vide on tar la simul |
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| 183 | if [[ ! -s ${IGCM_DEM_SIMU}/liste_output_files_config.txt ]]; then |
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| 184 | DEM_log -2 "liste output vide" |
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| 185 | cd ${EXE_DIR} |
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| 186 | ./write_liste_tar.sh ${IGCM_DEM_SIMU}/config_card_${JobName} |
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| 187 | cd ${JOB_DIR} |
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| 188 | fi |
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| 189 | |
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| 190 | |
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| 191 | done |
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| 192 | |
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| 193 | # gpdebug : le script n'a pas rencontre d'erreur. On l'inscrit dans le fichier de suivi |
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| 194 | echo $MonitoringInfo >> $generalMonitorFile |
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| 195 | |
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| 196 | DEM_log -0 "Fin de ${SCRIPT_NAME}" |
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| 197 | |
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