| 1 | #!/bin/bash |
|---|
| 2 | #------------------------------------------------------ |
|---|
| 3 | switchtotar=0 |
|---|
| 4 | maxtries=3 |
|---|
| 5 | #--------------------------------------------- |
|---|
| 6 | while [ $# -ne 0 ] |
|---|
| 7 | do |
|---|
| 8 | case $1 in |
|---|
| 9 | --switchtotar) |
|---|
| 10 | switchtotar=1 |
|---|
| 11 | shift 1 ;; |
|---|
| 12 | --maxtries) |
|---|
| 13 | maxtries=$2 |
|---|
| 14 | shift 2 ;; |
|---|
| 15 | -h|--help|-help) |
|---|
| 16 | echo "----------------------------------------------------------------------------" |
|---|
| 17 | echo "Usage: enlarge_my_files.sh [--switchtotar] [--maxtries N] dirin dirout" |
|---|
| 18 | echo |
|---|
| 19 | echo "Description:" |
|---|
| 20 | echo " Pass a ncrcat, tar or cp command on files from prepared sets of files." |
|---|
| 21 | echo " For ncrcat command 2 shots will be done at each try". |
|---|
| 22 | echo |
|---|
| 23 | echo " A status file and a log file will be created in output_ncrcat directory." |
|---|
| 24 | echo " Copy a set to output_tar directory for later processing after N tries." |
|---|
| 25 | echo |
|---|
| 26 | echo "Arguments:" |
|---|
| 27 | echo " dirin is the input directory where files to concatenate will be read" |
|---|
| 28 | echo " dirout is the output directory where concatenated files will be written" |
|---|
| 29 | echo |
|---|
| 30 | echo " The following directory must exist where the command enlarge_my_files is run:" |
|---|
| 31 | echo " enlarge_my_files" |
|---|
| 32 | echo " |-- output_ncrcat" |
|---|
| 33 | echo " | |-- set_000001.list" |
|---|
| 34 | echo " | |-- set_000002.list" |
|---|
| 35 | echo " | |-- set_000003.list" |
|---|
| 36 | echo " | |-- set_000004.list" |
|---|
| 37 | echo " | \`-- set_000005.list" |
|---|
| 38 | echo " \`-- output_tar" |
|---|
| 39 | echo |
|---|
| 40 | echo "Options:" |
|---|
| 41 | echo " -h, --help, -help" |
|---|
| 42 | echo " Print this manual." |
|---|
| 43 | echo " --switchtotar" |
|---|
| 44 | echo " Abort ncrcat operation and switch to tar command" |
|---|
| 45 | echo " --maxtries N" |
|---|
| 46 | echo " Maximum number of tries before switching to tar command" |
|---|
| 47 | echo " Default is 3" |
|---|
| 48 | echo |
|---|
| 49 | echo "----------------------------------------------------------------------------" |
|---|
| 50 | exit ;; |
|---|
| 51 | -*) |
|---|
| 52 | `dirname $0`/enlarge_my_files.sh -h |
|---|
| 53 | exit ;; |
|---|
| 54 | *) |
|---|
| 55 | break ;; |
|---|
| 56 | esac |
|---|
| 57 | done |
|---|
| 58 | |
|---|
| 59 | if [ $# -lt 2 ] ; then |
|---|
| 60 | `dirname $0`/enlarge_my_files.sh -h |
|---|
| 61 | exit |
|---|
| 62 | fi |
|---|
| 63 | |
|---|
| 64 | if ( \ |
|---|
| 65 | [ ! -d $PATH_SIMU/output_ncrcat ] || \ |
|---|
| 66 | [ ! -d $PATH_SIMU/output_tar ] || \ |
|---|
| 67 | [ ! -d $PATH_SIMU/restart_tar ] || \ |
|---|
| 68 | [ ! -d $PATH_SIMU/store_cp ] || \ |
|---|
| 69 | [ ! -d $PATH_SIMU/work_cp ] || \ |
|---|
| 70 | [ ! -d $PATH_SIMU/debug_tar ] || \ |
|---|
| 71 | [ ! -d $PATH_SIMU/other_tar ] \ |
|---|
| 72 | ) \ |
|---|
| 73 | && \ |
|---|
| 74 | [ ! -e $PATH_SIMU/tar_full_simul.list ] |
|---|
| 75 | then |
|---|
| 76 | `dirname $0`/enlarge_my_files.sh -h |
|---|
| 77 | exit |
|---|
| 78 | fi |
|---|
| 79 | |
|---|
| 80 | #------------------------------------------------------ |
|---|
| 81 | dirin=$1 |
|---|
| 82 | dirout=$2 |
|---|
| 83 | dirout_work=$3 |
|---|
| 84 | |
|---|
| 85 | #------------------------------------------------------ |
|---|
| 86 | function find_varstoexclude { |
|---|
| 87 | nbfile=0 |
|---|
| 88 | for file in `cat $1` ; do |
|---|
| 89 | # ncdump -h ${file} | gawk '{if (match($0, /(byte|char|short|int|float|double) (.*)\(/, arr)) print arr[2] }' >> tmp_$$.txt |
|---|
| 90 | ncdump -h ${file} | grep -Ew "byte|char|short|int|float|double" | awk -F\( '{split($1,a," ") ; split($2,b,")") ; if (a[2] != b[1]) print a[2]}' >> tmp_$$.txt |
|---|
| 91 | let nbfile=nbfile+1 |
|---|
| 92 | done |
|---|
| 93 | |
|---|
| 94 | varstoexclude=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if ($1 != nbfile) {print $2}}' | paste -s -d','` |
|---|
| 95 | varstoexcludefiltered=`cat tmp_$$.txt | sort | uniq -c | awk -v nbfile=$nbfile '{if (($1 != nbfile) && !(match($2, /t_inst_(.*)/))) {print $2}}' | paste -s -d','` |
|---|
| 96 | nbvars=`echo $varstoexcludefiltered | gawk -F',' '{print NF}'` |
|---|
| 97 | |
|---|
| 98 | rm -f tmp_$$.txt |
|---|
| 99 | |
|---|
| 100 | return 0 |
|---|
| 101 | } |
|---|
| 102 | |
|---|
| 103 | # gpdebug : pour test showPackProgress.sh ************************* |
|---|
| 104 | export RANDOM=$$ |
|---|
| 105 | |
|---|
| 106 | function gives_0_or_1 |
|---|
| 107 | { |
|---|
| 108 | bit=-1 |
|---|
| 109 | let "bit = RANDOM % 2" |
|---|
| 110 | echo $bit |
|---|
| 111 | } |
|---|
| 112 | |
|---|
| 113 | resultCmd= |
|---|
| 114 | # gpdebug : ****************************** fin ******************** |
|---|
| 115 | |
|---|
| 116 | source ${EXE_DIR}/DEM_utilities.sh # gpdebug : pour trouver les fonctions de mesure de temps |
|---|
| 117 | |
|---|
| 118 | if ( \ |
|---|
| 119 | [ -d $PATH_SIMU/output_ncrcat ] || \ |
|---|
| 120 | [ -d $PATH_SIMU/output_tar ] || \ |
|---|
| 121 | [ -d $PATH_SIMU/restart_tar ] || \ |
|---|
| 122 | [ -d $PATH_SIMU/store_cp ] || \ |
|---|
| 123 | [ -d $PATH_SIMU/work_cp ] || \ |
|---|
| 124 | [ -d $PATH_SIMU/debug_tar ] || \ |
|---|
| 125 | [ -d $PATH_SIMU/other_tar ] \ |
|---|
| 126 | ) |
|---|
| 127 | then |
|---|
| 128 | |
|---|
| 129 | #------------------------------------------------------ |
|---|
| 130 | for set in $( ls $PATH_SIMU/output_ncrcat/*list ) ; do |
|---|
| 131 | |
|---|
| 132 | #----------------------------------- |
|---|
| 133 | echo "#-------------------" |
|---|
| 134 | echo "Set: $set" |
|---|
| 135 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 136 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 137 | statusfile=${set%%.list}.status |
|---|
| 138 | logfile=${set%%.list}_${datestr}.log |
|---|
| 139 | |
|---|
| 140 | #----------------------------------- |
|---|
| 141 | # Create status file if not exists |
|---|
| 142 | if [ ! -e $statusfile ] ; then |
|---|
| 143 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 144 | fi |
|---|
| 145 | |
|---|
| 146 | #----------------------------------- |
|---|
| 147 | # Switch to tar command |
|---|
| 148 | if [ $switchtotar -eq 1 ] ; then |
|---|
| 149 | echo "====> DELEGATE to tar command with option --switchtotar" |
|---|
| 150 | echo "DELEGATE to tar command with option --switchtotar" >> $statusfile |
|---|
| 151 | mv $set $PATH_SIMU/output_tar |
|---|
| 152 | continue |
|---|
| 153 | fi |
|---|
| 154 | |
|---|
| 155 | #----------------------------------- |
|---|
| 156 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 157 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 158 | printf "====> " |
|---|
| 159 | tail -1 $statusfile |
|---|
| 160 | continue |
|---|
| 161 | fi |
|---|
| 162 | |
|---|
| 163 | #----------------------------------- |
|---|
| 164 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 165 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 166 | echo "Nb of tries: $nbtries" |
|---|
| 167 | |
|---|
| 168 | #----------------------------------- |
|---|
| 169 | # Set output file name from list name |
|---|
| 170 | |
|---|
| 171 | fileout1=$( basename $set ) |
|---|
| 172 | fileout=${fileout1%.list} |
|---|
| 173 | |
|---|
| 174 | filefirst=`head -n 1 $set` |
|---|
| 175 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
|---|
| 176 | |
|---|
| 177 | outputfile=$diroutputfile/${fileout} |
|---|
| 178 | mkdir -p $diroutputfile |
|---|
| 179 | echo "Output file to write: $outputfile" |
|---|
| 180 | |
|---|
| 181 | #----------------------------------- |
|---|
| 182 | # Find variables to exclude to have homogeneous files (always exclude 't_inst_.*') |
|---|
| 183 | extratar=0 |
|---|
| 184 | find_varstoexclude $set |
|---|
| 185 | if [ $nbvars -eq 0 ] ; then |
|---|
| 186 | varstoexclude="t_inst_.*" |
|---|
| 187 | else |
|---|
| 188 | # There are others variables than 't_inst_.*' so an extra tar file will be created |
|---|
| 189 | varstoexclude="t_inst_.*,$varstoexcludefiltered" |
|---|
| 190 | extratar=1 |
|---|
| 191 | # Copy to output_tar directory |
|---|
| 192 | echo "====> COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" |
|---|
| 193 | echo "COPY to tar command because find other variables ($varstoexcludefiltered) than t_inst_*" >> $statusfile |
|---|
| 194 | cp $set $PATH_SIMU/output_tar |
|---|
| 195 | fi |
|---|
| 196 | |
|---|
| 197 | #----------------------------------- |
|---|
| 198 | # Try 2 times before fire "FAILED" |
|---|
| 199 | ncrcatcmd=ncrcat |
|---|
| 200 | ncrcatoptions="" |
|---|
| 201 | if [ "x${ON_IDRIS}" == "xno" ] |
|---|
| 202 | then |
|---|
| 203 | ncrcatoptions="--md5_digest" |
|---|
| 204 | fi |
|---|
| 205 | # ncrcatoptions="" |
|---|
| 206 | |
|---|
| 207 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 208 | resCmd=0 |
|---|
| 209 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 210 | resCmd=$? |
|---|
| 211 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 212 | |
|---|
| 213 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 214 | # resultCmd=1 |
|---|
| 215 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 216 | if [ $resCmd -eq 0 ] ; then |
|---|
| 217 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 218 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 219 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
|---|
| 220 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 2)" |
|---|
| 221 | echo "COMPLETED at try #$nbtries (at 1st shot on 2)" >> $statusfile |
|---|
| 222 | else |
|---|
| 223 | # Add --md5_digest |
|---|
| 224 | rm -f $outputfile*ncrcat.tmp |
|---|
| 225 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 226 | resCmd=0 |
|---|
| 227 | cat $set | $ncrcatcmd $ncrcatoptions -O -x -v $varstoexclude -o $outputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 228 | resCmd=$? |
|---|
| 229 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 230 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 231 | # resultCmd=1 |
|---|
| 232 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 233 | if [ $resCmd -eq 0 ] ; then |
|---|
| 234 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 235 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 236 | echo "DONE ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
|---|
| 237 | echo "====> COMPLETED at try #$nbtries (at 2nd shot on 2)" |
|---|
| 238 | echo "COMPLETED at try #$nbtries (at 2nd shot on 2)" >> $statusfile |
|---|
| 239 | else |
|---|
| 240 | rm -f $outputfile*ncrcat.tmp |
|---|
| 241 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 242 | echo "====> FAILED at try #$nbtries" |
|---|
| 243 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; cat $set | $ncrcatcmd $ncrcatoptions -O -x -v '$varstoexclude' -o $outputfile ; $logfile ; $extratar" >> $statusfile |
|---|
| 244 | if [ $nbtries -ge $maxtries ] ; then |
|---|
| 245 | echo "====> DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" |
|---|
| 246 | echo "DELEGATE to tar command after $nbtries tries (maxtries=$maxtries)" >> $statusfile |
|---|
| 247 | cp $set $PATH_SIMU/output_tar # gpdebug : a retablir |
|---|
| 248 | fi |
|---|
| 249 | fi |
|---|
| 250 | fi |
|---|
| 251 | |
|---|
| 252 | done |
|---|
| 253 | |
|---|
| 254 | #------------------------------------------------------ |
|---|
| 255 | |
|---|
| 256 | for set in $( ls $PATH_SIMU/output_tar/*list ) ; do |
|---|
| 257 | |
|---|
| 258 | #----------------------------------- |
|---|
| 259 | echo "#-------------------" |
|---|
| 260 | echo "Set: $set" |
|---|
| 261 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 262 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 263 | statusfile=${set%%.list}.status |
|---|
| 264 | logfile=${set%%.list}_${datestr}.log |
|---|
| 265 | |
|---|
| 266 | #----------------------------------- |
|---|
| 267 | # Create status file if not exists |
|---|
| 268 | if [ ! -e $statusfile ] ; then |
|---|
| 269 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 270 | fi |
|---|
| 271 | |
|---|
| 272 | #----------------------------------- |
|---|
| 273 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 274 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 275 | printf "====> " |
|---|
| 276 | tail -1 $statusfile |
|---|
| 277 | continue |
|---|
| 278 | fi |
|---|
| 279 | |
|---|
| 280 | #----------------------------------- |
|---|
| 281 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 282 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 283 | # echo "Nb of tries: $nbtries" |
|---|
| 284 | |
|---|
| 285 | #----------------------------------- |
|---|
| 286 | # Set output file name from list name |
|---|
| 287 | |
|---|
| 288 | fileout1=$( basename $set ) |
|---|
| 289 | fileout=${fileout1%.list}.tar |
|---|
| 290 | |
|---|
| 291 | filefirst=`head -n 1 $set` |
|---|
| 292 | dirinputfile=`dirname $filefirst` |
|---|
| 293 | diroutputfile=`dirname $filefirst | sed -e "s%$dirin%$dirout%"` |
|---|
| 294 | |
|---|
| 295 | outputfile=$diroutputfile/${fileout} |
|---|
| 296 | mkdir -p $diroutputfile |
|---|
| 297 | echo "Output file to write: $outputfile" |
|---|
| 298 | |
|---|
| 299 | #----------------------------------- |
|---|
| 300 | # Try 1 time before fire "FAILED" |
|---|
| 301 | # Waiting for CCRT command |
|---|
| 302 | tarcmd=tar |
|---|
| 303 | taroptions="--format=posix -W -cf" |
|---|
| 304 | #taroptions="--format=posix -cf" |
|---|
| 305 | cd $dirinputfile |
|---|
| 306 | |
|---|
| 307 | set_local=$set".local" |
|---|
| 308 | for file in $( cat $set) ; do |
|---|
| 309 | basename $file >> $set".local" |
|---|
| 310 | done |
|---|
| 311 | |
|---|
| 312 | # #----------------------------------- |
|---|
| 313 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 314 | resCmd=0 |
|---|
| 315 | $tarcmd $taroptions $outputfile --dereference --files-from $set.local > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 316 | resCmd=$? |
|---|
| 317 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 318 | |
|---|
| 319 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 320 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 321 | if [ $resCmd -eq 0 ] ; then |
|---|
| 322 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 323 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 324 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 325 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 326 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 327 | else |
|---|
| 328 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 329 | echo "====> FAILED at try #$nbtries" |
|---|
| 330 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 331 | |
|---|
| 332 | fi |
|---|
| 333 | rm -f $set".local" |
|---|
| 334 | #----------------------------------- |
|---|
| 335 | |
|---|
| 336 | done |
|---|
| 337 | |
|---|
| 338 | |
|---|
| 339 | #------------------------------------------------------ |
|---|
| 340 | |
|---|
| 341 | for set in $( ls $PATH_SIMU/restart_tar/*list ) ; do |
|---|
| 342 | #----------------------------------- |
|---|
| 343 | echo "#-------------------" |
|---|
| 344 | echo "Set: $set" |
|---|
| 345 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 346 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 347 | statusfile=${set%%.list}.status |
|---|
| 348 | logfile=${set%%.list}_${datestr}.log |
|---|
| 349 | |
|---|
| 350 | #----------------------------------- |
|---|
| 351 | # Create status file if not exists |
|---|
| 352 | if [ ! -e $statusfile ] ; then |
|---|
| 353 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 354 | fi |
|---|
| 355 | |
|---|
| 356 | #----------------------------------- |
|---|
| 357 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 358 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 359 | printf "====> " |
|---|
| 360 | tail -1 $statusfile |
|---|
| 361 | continue |
|---|
| 362 | fi |
|---|
| 363 | |
|---|
| 364 | #----------------------------------- |
|---|
| 365 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 366 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 367 | # echo "Nb of tries: $nbtries" |
|---|
| 368 | |
|---|
| 369 | #----------------------------------- |
|---|
| 370 | # Set output file name from list name |
|---|
| 371 | dirin1=$PATH_SIMU/RESTART |
|---|
| 372 | dirin2=${dirin1##${IGCM_DEM}} |
|---|
| 373 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
|---|
| 374 | diroutputfile=${OUTPUT_STORE}${dirin3} |
|---|
| 375 | fileout1=$( basename $set ) |
|---|
| 376 | fileout=${fileout1%.list}.tar |
|---|
| 377 | outputfile=$diroutputfile/${fileout} |
|---|
| 378 | mkdir -p $diroutputfile |
|---|
| 379 | echo "Output file to write: $outputfile" |
|---|
| 380 | |
|---|
| 381 | #----------------------------------- |
|---|
| 382 | # Try 1 time before fire "FAILED" |
|---|
| 383 | # Waiting for CCRT command |
|---|
| 384 | tarcmd=tar |
|---|
| 385 | taroptions="--format=posix -W -cf" |
|---|
| 386 | # taroptions="--format=posix -cf" |
|---|
| 387 | cd $dirin1 |
|---|
| 388 | # ls |
|---|
| 389 | |
|---|
| 390 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 391 | resCmd=0 |
|---|
| 392 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 393 | resCmd=$? |
|---|
| 394 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 395 | |
|---|
| 396 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 397 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 398 | if [ $resCmd -eq 0 ] ; then |
|---|
| 399 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 400 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 401 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 402 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 403 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 404 | else |
|---|
| 405 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 406 | echo "====> FAILED at try #$nbtries" |
|---|
| 407 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 408 | |
|---|
| 409 | fi |
|---|
| 410 | |
|---|
| 411 | #----------------------------------- |
|---|
| 412 | |
|---|
| 413 | done |
|---|
| 414 | |
|---|
| 415 | #------------------------------------------------------ |
|---|
| 416 | for set in $( ls $PATH_SIMU/debug_tar/*list ) ; do |
|---|
| 417 | |
|---|
| 418 | #----------------------------------- |
|---|
| 419 | echo "#-------------------" |
|---|
| 420 | echo "Set: $set" |
|---|
| 421 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 422 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 423 | statusfile=${set%%.list}.status |
|---|
| 424 | logfile=${set%%.list}_${datestr}.log |
|---|
| 425 | |
|---|
| 426 | #----------------------------------- |
|---|
| 427 | # Create status file if not exists |
|---|
| 428 | if [ ! -e $statusfile ] ; then |
|---|
| 429 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 430 | fi |
|---|
| 431 | |
|---|
| 432 | #----------------------------------- |
|---|
| 433 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 434 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 435 | printf "====> " |
|---|
| 436 | tail -1 $statusfile |
|---|
| 437 | continue |
|---|
| 438 | fi |
|---|
| 439 | |
|---|
| 440 | #----------------------------------- |
|---|
| 441 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 442 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 443 | # echo "Nb of tries: $nbtries" |
|---|
| 444 | |
|---|
| 445 | #----------------------------------- |
|---|
| 446 | # Set output file name from list name |
|---|
| 447 | dirin1=$PATH_SIMU/DEBUG |
|---|
| 448 | dirin2=${dirin1##${IGCM_DEM}} |
|---|
| 449 | dirin3=${dirin2##/$( basename ${INPUT_DMF_DATA} )} |
|---|
| 450 | diroutputfile=${OUTPUT_STORE}${dirin3} |
|---|
| 451 | fileout1=$( basename $set ) |
|---|
| 452 | fileout=${fileout1%.list}.tar |
|---|
| 453 | outputfile=$diroutputfile/${fileout} |
|---|
| 454 | mkdir -p $diroutputfile |
|---|
| 455 | echo "Output file to write: $outputfile" |
|---|
| 456 | |
|---|
| 457 | #----------------------------------- |
|---|
| 458 | # Try 1 time before fire "FAILED" |
|---|
| 459 | # Waiting for CCRT command |
|---|
| 460 | tarcmd=tar |
|---|
| 461 | taroptions="--format=posix -W -cf" |
|---|
| 462 | # taroptions="--format=posix -cf" |
|---|
| 463 | cd $dirin1 |
|---|
| 464 | # ls |
|---|
| 465 | |
|---|
| 466 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 467 | resCmd=0 |
|---|
| 468 | $tarcmd $taroptions $outputfile --dereference --files-from $set > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 469 | resCmd=$? |
|---|
| 470 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 471 | |
|---|
| 472 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 473 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 474 | if [ $resCmd -eq 0 ] ; then |
|---|
| 475 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 476 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 477 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 478 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 479 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 480 | else |
|---|
| 481 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 482 | echo "====> FAILED at try #$nbtries" |
|---|
| 483 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 484 | |
|---|
| 485 | fi |
|---|
| 486 | |
|---|
| 487 | #----------------------------------- |
|---|
| 488 | |
|---|
| 489 | done |
|---|
| 490 | |
|---|
| 491 | #------------------------------------------------------ |
|---|
| 492 | for set in $( ls $PATH_SIMU/store_cp/*list ) ; do |
|---|
| 493 | |
|---|
| 494 | #----------------------------------- |
|---|
| 495 | echo "#-------------------" |
|---|
| 496 | echo "Set: $set" |
|---|
| 497 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 498 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 499 | statusfile=${set%%.list}.status |
|---|
| 500 | logfile=${set%%.list}_${datestr}.log |
|---|
| 501 | |
|---|
| 502 | #----------------------------------- |
|---|
| 503 | # Create status file if not exists |
|---|
| 504 | if [ ! -e $statusfile ] ; then |
|---|
| 505 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 506 | fi |
|---|
| 507 | |
|---|
| 508 | #----------------------------------- |
|---|
| 509 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 510 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 511 | printf "====> " |
|---|
| 512 | tail -1 $statusfile |
|---|
| 513 | continue |
|---|
| 514 | fi |
|---|
| 515 | |
|---|
| 516 | #----------------------------------- |
|---|
| 517 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 518 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 519 | # echo "Nb of tries: $nbtries" |
|---|
| 520 | |
|---|
| 521 | #----------------------------------- |
|---|
| 522 | # Set output file name from first and last files from the current set |
|---|
| 523 | for file in $( cat $set) ; do |
|---|
| 524 | |
|---|
| 525 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout%"` |
|---|
| 526 | mkdir -p $diroutputfile |
|---|
| 527 | echo "Output file to write: $diroutputfile/$( basename $file )" |
|---|
| 528 | |
|---|
| 529 | #----------------------------------- |
|---|
| 530 | # Try 1 time before fire "FAILED" |
|---|
| 531 | # Waiting for CCRT command |
|---|
| 532 | cpcmd="cp " |
|---|
| 533 | cpoptions="-rf" |
|---|
| 534 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 535 | resCmd=0 |
|---|
| 536 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 537 | resCmd=$? |
|---|
| 538 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 539 | done |
|---|
| 540 | |
|---|
| 541 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 542 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 543 | if [ $resCmd -eq 0 ] ; then |
|---|
| 544 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 545 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 546 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 547 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 548 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 549 | else |
|---|
| 550 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 551 | echo "====> FAILED at try #$nbtries" |
|---|
| 552 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 553 | |
|---|
| 554 | fi |
|---|
| 555 | |
|---|
| 556 | #----------------------------------- |
|---|
| 557 | |
|---|
| 558 | done |
|---|
| 559 | |
|---|
| 560 | #------------------------------------------------------ |
|---|
| 561 | for set in $( ls $PATH_SIMU/work_cp/*list ) ; do |
|---|
| 562 | |
|---|
| 563 | #----------------------------------- |
|---|
| 564 | echo "#-------------------" |
|---|
| 565 | echo "Set: $set" |
|---|
| 566 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 567 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 568 | statusfile=${set%%.list}.status |
|---|
| 569 | logfile=${set%%.list}_${datestr}.log |
|---|
| 570 | |
|---|
| 571 | #----------------------------------- |
|---|
| 572 | # Create status file if not exists |
|---|
| 573 | if [ ! -e $statusfile ] ; then |
|---|
| 574 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 575 | fi |
|---|
| 576 | |
|---|
| 577 | #----------------------------------- |
|---|
| 578 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 579 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 580 | printf "====> " |
|---|
| 581 | tail -1 $statusfile |
|---|
| 582 | continue |
|---|
| 583 | fi |
|---|
| 584 | |
|---|
| 585 | #----------------------------------- |
|---|
| 586 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 587 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 588 | # echo "Nb of tries: $nbtries" |
|---|
| 589 | |
|---|
| 590 | #----------------------------------- |
|---|
| 591 | # Set output file name from first and last files from the current set |
|---|
| 592 | for file in $( cat $set) ; do |
|---|
| 593 | |
|---|
| 594 | diroutputfile=`dirname $file | sed -e "s%$dirin%$dirout_work%"` |
|---|
| 595 | mkdir -p $diroutputfile |
|---|
| 596 | echo "Output file to write: $diroutputfile/$( basename $file )" |
|---|
| 597 | |
|---|
| 598 | #----------------------------------- |
|---|
| 599 | # Try 1 time before fire "FAILED" |
|---|
| 600 | # Waiting for CCRT command |
|---|
| 601 | cpcmd="cp " |
|---|
| 602 | cpoptions="-rf" |
|---|
| 603 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 604 | resCmd=0 |
|---|
| 605 | $cpcmd $cpoptions $file $diroutputfile > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 606 | resCmd=$? |
|---|
| 607 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : timeS |
|---|
| 608 | done |
|---|
| 609 | |
|---|
| 610 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 611 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 612 | if [ $resCmd -eq 0 ] ; then |
|---|
| 613 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 614 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 615 | echo "DONE ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 616 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 617 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 618 | else |
|---|
| 619 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 620 | echo "====> FAILED at try #$nbtries" |
|---|
| 621 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $cpcmd $cpoptions $file $diroutputfile ; $logfile" >> $statusfile |
|---|
| 622 | |
|---|
| 623 | fi |
|---|
| 624 | |
|---|
| 625 | #----------------------------------- |
|---|
| 626 | |
|---|
| 627 | done |
|---|
| 628 | fi |
|---|
| 629 | |
|---|
| 630 | for set in $( ls ${PATH_SIMU}/*.list | grep "tar_full_simul" ) |
|---|
| 631 | do |
|---|
| 632 | # set="${PATH_SIMU}/tar_full_simul.list" # gpdebug : foireux ? |
|---|
| 633 | #----------------------------------- |
|---|
| 634 | echo "#-------------------" |
|---|
| 635 | echo "Set: $set" |
|---|
| 636 | datestr=`LC_ALL=C date +"%Y%m%dT%H%M%S"` |
|---|
| 637 | datestr1=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 638 | statusfile=${set%%.list}.status |
|---|
| 639 | logfile=${set%%.list}_${datestr}.log |
|---|
| 640 | |
|---|
| 641 | #----------------------------------- |
|---|
| 642 | # Create status file if not exists |
|---|
| 643 | if [ ! -e $statusfile ] ; then |
|---|
| 644 | echo "# Status ; DateStart ; DateEnd ; Command ; TarFileExists" > $statusfile |
|---|
| 645 | fi |
|---|
| 646 | |
|---|
| 647 | #----------------------------------- |
|---|
| 648 | # Skip the set if last line of the status file is "COMPLETED" or "DELEGATE" |
|---|
| 649 | if tail -1 $statusfile | grep -q -E '(COMPLETED|DELEGATE)' ; then |
|---|
| 650 | printf "====> " |
|---|
| 651 | tail -1 $statusfile |
|---|
| 652 | continue |
|---|
| 653 | fi |
|---|
| 654 | |
|---|
| 655 | #----------------------------------- |
|---|
| 656 | # nbtries = number of lines from status file (first comment line gives 1 for the first try) |
|---|
| 657 | nbtries=`wc -l $statusfile | cut -d' ' -f1` |
|---|
| 658 | # echo "Nb of tries: $nbtries" |
|---|
| 659 | |
|---|
| 660 | #----------------------------------- |
|---|
| 661 | # Set output file name from list name |
|---|
| 662 | # echo "PATH_SIMU=$PATH_SIMU" |
|---|
| 663 | dirOfOutputFile=`echo $PATH_SIMU | sed "s;${IGCM_DEM};${OUTPUT_STORE};" ` |
|---|
| 664 | # echo "dirOfOutputFile=$dirOfOutputFile" |
|---|
| 665 | dirOfOutputFile_Up=$( dirname $dirOfOutputFile ) |
|---|
| 666 | PATH_SIMU_NAME=$( basename $dirOfOutputFile ) |
|---|
| 667 | fileout=${PATH_SIMU_NAME}.tar |
|---|
| 668 | # echo "dirnameOfListFile=$dirnameOfListFile" |
|---|
| 669 | outputfile=$dirOfOutputFile_Up/${fileout} |
|---|
| 670 | # echo "outputfile=$outputfile" |
|---|
| 671 | # exit 1 # gpdebug : a virer |
|---|
| 672 | mkdir -p $dirOfOutputFile_Up |
|---|
| 673 | echo "Output file to write: $outputfile tar_full_simul" |
|---|
| 674 | |
|---|
| 675 | # exit 0 # a virer |
|---|
| 676 | |
|---|
| 677 | #----------------------------------- |
|---|
| 678 | # Try 1 time before fire "FAILED" |
|---|
| 679 | # Waiting for CCRT command |
|---|
| 680 | tarcmd=tar |
|---|
| 681 | taroptions="--format=posix -W -cf" |
|---|
| 682 | # taroptions="--format=posix -cf" |
|---|
| 683 | |
|---|
| 684 | filefirst=`head -n 1 $set` |
|---|
| 685 | dirinputfile=`dirname $filefirst` |
|---|
| 686 | cd $dirinputfile |
|---|
| 687 | |
|---|
| 688 | set_local=${set%%.list}.local |
|---|
| 689 | > $set_local |
|---|
| 690 | for file in $( cat $set) ; do |
|---|
| 691 | basename $file >> $set_local |
|---|
| 692 | done |
|---|
| 693 | # ls |
|---|
| 694 | |
|---|
| 695 | startTime=$( getDateMilliSeconds ) # gpdebug : time |
|---|
| 696 | resCmd=0 |
|---|
| 697 | $tarcmd $taroptions $outputfile --dereference --files-from $set_local > $logfile 2>&1 # gpdebug : a retablir |
|---|
| 698 | resCmd=$? |
|---|
| 699 | meantime=$( getTimeDiffSeconds $startTime ) # gpdebug : time |
|---|
| 700 | |
|---|
| 701 | # resultCmd=$( gives_0_or_1 ) |
|---|
| 702 | # if [ $resultCmd -eq 0 ] ; then |
|---|
| 703 | if [ $resCmd -eq 0 ] ; then |
|---|
| 704 | sed -i "1i\meantime:${meantime}" $statusfile # gpdebug : time |
|---|
| 705 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 706 | echo "DONE ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set); $logfile" >> $statusfile |
|---|
| 707 | echo "====> COMPLETED at try #$nbtries (at 1st shot on 1)" |
|---|
| 708 | echo "COMPLETED at try #$nbtries (at 1st shot on 1)" >> $statusfile |
|---|
| 709 | else |
|---|
| 710 | datestr2=`LC_ALL=C date +"%Y-%m-%dT%H:%M:%S"` |
|---|
| 711 | echo "====> FAILED at try #$nbtries" |
|---|
| 712 | echo "FAILED at try #$nbtries ; $datestr1 ; $datestr2 ; $tarcmd $taroptions $outputfile $(cat $set) ; $logfile" >> $statusfile |
|---|
| 713 | exit 1 |
|---|
| 714 | fi |
|---|
| 715 | |
|---|
| 716 | #----------------------------------- |
|---|
| 717 | done |
|---|
