1 | # -*- coding: utf-8 -*- |
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2 | ## =========================================================================== |
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3 | ## |
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4 | ## This software is governed by the CeCILL license under French law and |
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5 | ## abiding by the rules of distribution of free software. You can use, |
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6 | ## modify and/ or redistribute the software under the terms of the CeCILL |
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7 | ## license as circulated by CEA, CNRS and INRIA at the following URL |
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8 | ## "http://www.cecill.info". |
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9 | ## |
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10 | ## Warning, to install, configure, run, use any of Olivier Marti's |
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11 | ## software or to read the associated documentation you'll need at least |
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12 | ## one (1) brain in a reasonably working order. Lack of this implement |
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13 | ## will void any warranties (either express or implied). |
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14 | ## O. Marti assumes no responsability for errors, omissions, |
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15 | ## data loss, or any other consequences caused directly or indirectly by |
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16 | ## the usage of his software by incorrectly or partially configured |
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17 | ## personal. |
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18 | ## |
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19 | ## =========================================================================== |
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20 | ''' |
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21 | Utilities to plot NEMO ORCA fields |
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22 | Periodicity and other stuff |
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23 | |
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24 | olivier.marti@lsce.ipsl.fr |
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25 | ''' |
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26 | |
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27 | ## SVN information |
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28 | __Author__ = "$Author$" |
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29 | __Date__ = "$Date$" |
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30 | __Revision__ = "$Revision$" |
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31 | __Id__ = "$Id$" |
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32 | __HeadURL = "$HeadURL$" |
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33 | |
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34 | import numpy as np |
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35 | try : import xarray as xr |
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36 | except ImportError : pass |
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37 | |
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38 | try : import f90nml |
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39 | except : pass |
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40 | |
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41 | try : from sklearn.impute import SimpleImputer |
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42 | except : pass |
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43 | |
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44 | try : import numba |
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45 | except : pass |
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46 | |
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47 | rpi = np.pi ; rad = np.deg2rad (1.0) ; dar = np.rad2deg (1.0) |
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48 | |
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49 | nperio_valid_range = [0, 1, 4, 4.2, 5, 6, 6.2] |
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50 | |
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51 | rday = 24.*60.*60. # Day length [s] |
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52 | rsiyea = 365.25 * rday * 2. * rpi / 6.283076 # Sideral year length [s] |
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53 | rsiday = rday / (1. + rday / rsiyea) |
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54 | raamo = 12. # Number of months in one year |
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55 | rjjhh = 24. # Number of hours in one day |
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56 | rhhmm = 60. # Number of minutes in one hour |
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57 | rmmss = 60. # Number of seconds in one minute |
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58 | omega = 2. * rpi / rsiday # Earth rotation parameter [s-1] |
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59 | ra = 6371229. # Earth radius [m] |
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60 | grav = 9.80665 # Gravity [m/s2] |
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61 | repsi = np.finfo (1.0).eps |
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62 | |
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63 | xList = [ 'x', 'X', 'lon' , 'longitude' ] |
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64 | yList = [ 'y', 'Y', 'lat' , 'latitude' ] |
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65 | zList = [ 'z', 'Z', 'depth' , ] |
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66 | tList = [ 't', 'T', 'time' , ] |
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67 | |
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68 | ## =========================================================================== |
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69 | def __mmath__ (tab, default=None) : |
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70 | mmath = default |
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71 | try : |
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72 | if type (tab) == xr.core.dataarray.DataArray : mmath = xr |
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73 | except : |
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74 | pass |
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75 | |
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76 | try : |
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77 | if type (tab) == np.ndarray : mmath = np |
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78 | except : |
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79 | pass |
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80 | |
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81 | return mmath |
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82 | |
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83 | |
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84 | def __guessNperio__ (jpj, jpi, nperio=None, out='nperio') : |
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85 | ''' |
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86 | Tries to guess the value of nperio (periodicity parameter. See NEMO documentation for details) |
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87 | |
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88 | Inputs |
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89 | jpj : number of latitudes |
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90 | jpi : number of longitudes |
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91 | nperio : periodicity parameter |
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92 | ''' |
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93 | if nperio == None : |
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94 | nperio = __guessConfig__ (jpj, jpi, nperio=None, out='nperio') |
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95 | |
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96 | return nperio |
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97 | |
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98 | def __guessConfig__ (jpj, jpi, nperio=None, config=None, out='nperio') : |
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99 | ''' |
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100 | Tries to guess the value of nperio (periodicity parameter. See NEMO documentation for details) |
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101 | |
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102 | Inputs |
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103 | jpj : number of latitudes |
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104 | jpi : number of longitudes |
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105 | nperio : periodicity parameter |
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106 | ''' |
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107 | if nperio == None : |
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108 | ## Values for NEMO version < 4.2 |
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109 | if jpj == 149 and jpi == 182 : |
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110 | config = 'ORCA2.3' |
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111 | nperio = 4 # ORCA2. We choose legacy orca2. |
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112 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'T' |
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113 | if jpj == 332 and jpi == 362 : # eORCA1. |
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114 | config = 'eORCA1.2' |
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115 | nperio = 6 |
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116 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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117 | if jpi == 1442 : # ORCA025. |
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118 | config = 'ORCA025' |
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119 | nperio = 6 |
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120 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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121 | if jpj == 294 : # ORCA1 |
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122 | config = 'ORCA1' |
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123 | nperio = 6 |
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124 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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125 | |
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126 | ## Values for NEMO version >= 4.2. No more halo points |
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127 | if jpj == 148 and jpi == 180 : |
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128 | config = 'ORCA2.4' |
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129 | nperio = 4.2 # ORCA2. We choose legacy orca2. |
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130 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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131 | if jpj == 331 and jpi == 360 : # eORCA1. |
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132 | config = 'eORCA1.4' |
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133 | nperio = 6.2 |
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134 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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135 | if jpi == 1440 : # ORCA025. |
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136 | config = 'ORCA025' |
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137 | nperio = 6.2 |
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138 | Iperio = 1 ; Jperio = 0 ; NFold = 1 ; NFtype = 'F' |
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139 | |
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140 | if nperio == None : |
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141 | raise Exception ('in nemo module : nperio not found, and cannot by guessed') |
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142 | else : |
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143 | if nperio in nperio_valid_range : |
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144 | print ('nperio set as {:} (deduced from jpj={:d} jpi={:d})'.format (nperio, jpj, jpi)) |
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145 | else : |
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146 | raise ValueError ('nperio set as {:} (deduced from jpi={:d}) : nemo.py is not ready for this value'.format (nperio, jpi)) |
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147 | |
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148 | if out == 'nperio' : return nperio |
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149 | if out == 'config' : return config |
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150 | if out == 'perio' : return Iperio, Jperio, NFold, NFtype |
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151 | if out in ['full', 'all'] : return {'nperio':nperio, 'Iperio':Iperio, 'Jperio':Jperio, 'NFold':NFold, 'NFtype':NFtype} |
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152 | |
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153 | def __guessPoint__ (ptab) : |
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154 | ''' |
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155 | Tries to guess the grid point (periodicity parameter. See NEMO documentation for details) |
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156 | |
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157 | For array conforments with xgcm requirements |
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158 | |
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159 | Inputs |
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160 | ptab : xarray array |
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161 | |
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162 | Credits : who is the original author ? |
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163 | ''' |
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164 | gP = None |
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165 | mmath = __mmath__ (ptab) |
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166 | if mmath == xr : |
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167 | if 'x_c' in ptab.dims and 'y_c' in ptab.dims : gP = 'T' |
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168 | if 'x_f' in ptab.dims and 'y_c' in ptab.dims : gP = 'U' |
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169 | if 'x_c' in ptab.dims and 'y_f' in ptab.dims : gP = 'V' |
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170 | if 'x_f' in ptab.dims and 'y_f' in ptab.dims : gP = 'F' |
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171 | if 'x_c' in ptab.dims and 'y_c' in ptab.dims and 'z_c' in ptab.dims : gP = 'T' |
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172 | if 'x_c' in ptab.dims and 'y_c' in ptab.dims and 'z_f' in ptab.dims : gP = 'W' |
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173 | if 'x_f' in ptab.dims and 'y_c' in ptab.dims and 'z_f' in ptab.dims : gP = 'U' |
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174 | if 'x_c' in ptab.dims and 'y_f' in ptab.dims and 'z_f' in ptab.dims : gP = 'V' |
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175 | if 'x_f' in ptab.dims and 'y_f' in ptab.dims and 'z_f' in ptab.dims : gP = 'F' |
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176 | |
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177 | if gP == None : |
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178 | raise Exception ('in nemo module : cd_type not found, and cannot by guessed') |
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179 | else : |
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180 | print ('Grid set as', gP, 'deduced from dims ', ptab.dims) |
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181 | return gP |
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182 | else : |
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183 | raise Exception ('in nemo module : cd_type not found, input is not an xarray data') |
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184 | |
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185 | def lbc_diag (nperio) : |
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186 | lperio = nperio ; aperio = False |
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187 | if nperio == 4.2 : |
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188 | lperio = 4 ; aperio = True |
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189 | if nperio == 6.2 : |
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190 | lperio = 6 ; aperio = True |
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191 | |
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192 | return lperio, aperio |
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193 | |
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194 | def __findAxis__ (tab, axis='z') : |
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195 | ''' |
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196 | Find number and name of the requested axis |
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197 | ''' |
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198 | mmath = __mmath__ (tab) |
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199 | ix = None ; ax = None |
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200 | |
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201 | if axis in xList : |
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202 | axList = [ 'x', 'X', |
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203 | 'lon', 'nav_lon', 'nav_lon_T', 'nav_lon_U', 'nav_lon_V', 'nav_lon_F', 'nav_lon_W', |
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204 | 'x_grid_T', 'x_grid_U', 'x_grid_V', 'x_grid_F', 'x_grid_W', |
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205 | 'glam', 'glamt', 'glamu', 'glamv', 'glamf', 'glamw' ] |
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206 | unList = [ 'degrees_east' ] |
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207 | if axis in yList : |
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208 | axList = [ 'y', 'Y', 'lat', |
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209 | 'nav_lat', 'nav_lat_T', 'nav_lat_U', 'nav_lat_V', 'nav_lat_F', 'nav_lat_W', |
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210 | 'y_grid_T', 'y_grid_U', 'y_grid_V', 'y_grid_F', 'y_grid_W', |
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211 | 'gphi', 'gphi', 'gphiu', 'gphiv', 'gphif', 'gphiw'] |
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212 | unList = [ 'degrees_north' ] |
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213 | if axis in zList : |
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214 | axList = [ 'z', 'Z', |
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215 | 'depth', 'deptht', 'depthu', 'depthv', 'depthf', 'depthw', |
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216 | 'olevel' ] |
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217 | unList = [ 'm', 'meter' ] |
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218 | if axis in tList : |
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219 | axList = [ 't', 'T', 'time', 'time_counter' ] |
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220 | unList = [ 'second', 'minute', 'hour', 'day', 'month' ] |
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221 | |
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222 | if mmath == xr : |
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223 | for Name in axList : |
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224 | try : |
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225 | ix = tab.dims.index (Name) |
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226 | ax = Name |
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227 | except : pass |
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228 | |
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229 | for i, dim in enumerate (tab.dims) : |
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230 | if 'units' in tab.coords[dim].attrs.keys() : |
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231 | for name in unList : |
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232 | if name in tab.coords[dim].attrs['units'] : |
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233 | ix = i |
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234 | ax = dim |
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235 | else : |
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236 | if axis in xList : ix=-1 |
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237 | if axis in yList : |
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238 | if len(tab.shape) >= 2 : ix=-2 |
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239 | if axis in zList : |
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240 | if len(tab.shape) >= 3 : ix=-3 |
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241 | if axis in tList : |
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242 | if len(tab.shape) >=3 : ix=-3 |
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243 | if len(tab.shape) >=4 : ix=-4 |
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244 | |
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245 | return ix, ax |
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246 | |
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247 | #@numba.jit(forceobj=True) |
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248 | def fixed_lon (lon, center_lon=0.0) : |
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249 | ''' |
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250 | Returns corrected longitudes for nicer plots |
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251 | |
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252 | lon : longitudes of the grid. At least 2D. |
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253 | center_lon : center longitude. Default=0. |
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254 | |
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255 | Designed by Phil Pelson. See https://gist.github.com/pelson/79cf31ef324774c97ae7 |
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256 | ''' |
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257 | mmath = __mmath__ (lon) |
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258 | |
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259 | fixed_lon = lon.copy () |
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260 | |
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261 | fixed_lon = mmath.where (fixed_lon > center_lon+180., fixed_lon-360.0, fixed_lon) |
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262 | fixed_lon = mmath.where (fixed_lon < center_lon-180., fixed_lon+360.0, fixed_lon) |
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263 | |
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264 | for i, start in enumerate (np.argmax (np.abs (np.diff (fixed_lon, axis=-1)) > 180., axis=-1)) : |
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265 | fixed_lon [..., i, start+1:] += 360. |
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266 | |
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267 | # Special case for eORCA025 |
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268 | if fixed_lon.shape [-1] == 1442 : fixed_lon [..., -2, :] = fixed_lon [..., -3, :] |
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269 | if fixed_lon.shape [-1] == 1440 : fixed_lon [..., -1, :] = fixed_lon [..., -2, :] |
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270 | |
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271 | if fixed_lon.min () > center_lon : fixed_lon += -360.0 |
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272 | if fixed_lon.max () < center_lon : fixed_lon += 360.0 |
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273 | |
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274 | if fixed_lon.min () < center_lon-360.0 : fixed_lon += 360.0 |
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275 | if fixed_lon.max () > center_lon+360.0 : fixed_lon += -360.0 |
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276 | |
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277 | return fixed_lon |
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278 | |
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279 | #@numba.jit(forceobj=True) |
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280 | def fill_empty (ztab, sval=np.nan, transpose=False) : |
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281 | ''' |
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282 | Fill values |
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283 | |
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284 | Useful when NEMO has run with no wet points options : |
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285 | some parts of the domain, with no ocean points, has no |
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286 | lon/lat values |
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287 | ''' |
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288 | mmath = __mmath__ (ztab) |
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289 | |
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290 | imp = SimpleImputer (missing_values=sval, strategy='mean') |
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291 | if transpose : |
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292 | imp.fit (ztab.T) |
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293 | ptab = imp.transform (ztab.T).T |
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294 | else : |
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295 | imp.fit (ztab) |
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296 | ptab = imp.transform (ztab) |
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297 | |
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298 | if mmath == xr : |
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299 | ptab = xr.DataArray (ptab, dims=ztab.dims, coords=ztab.coords) |
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300 | ptab.attrs = ztab.attrs |
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301 | |
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302 | return ptab |
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303 | |
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304 | #@numba.jit(forceobj=True) |
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305 | def fill_lonlat (lon, lat, sval=-1) : |
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306 | ''' |
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307 | Fill longitude/latitude values |
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308 | |
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309 | Useful when NEMO has run with no wet points options : |
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310 | some parts of the domain, with no ocean points, as no |
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311 | lon/lat values |
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312 | ''' |
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313 | mmath = __mmath__ (lon) |
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314 | |
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315 | imp = SimpleImputer (missing_values=sval, strategy='mean') |
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316 | imp.fit (lon) |
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317 | plon = imp.transform (lon) |
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318 | imp.fit (lat.T) |
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319 | plat = imp.transform (lat.T).T |
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320 | |
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321 | if mmath == xr : |
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322 | plon = xr.DataArray (plon, dims=lon.dims, coords=lon.coords) |
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323 | plat = xr.DataArray (plat, dims=lat.dims, coords=lat.coords) |
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324 | plon.attrs = lon.attrs ; plat.attrs = lat.attrs |
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325 | |
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326 | plon = fixed_lon (plon) |
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327 | |
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328 | return plon, plat |
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329 | |
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330 | #@numba.jit(forceobj=True) |
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331 | def jeq (lat) : |
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332 | ''' |
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333 | Returns j index of equator in the grid |
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334 | |
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335 | lat : latitudes of the grid. At least 2D. |
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336 | ''' |
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337 | mmath = __mmath__ (lat) |
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338 | ix, ax = __findAxis__ (lat, 'x') |
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339 | iy, ay = __findAxis__ (lat, 'y') |
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340 | |
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341 | if mmath == xr : |
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342 | jeq = int ( np.mean ( np.argmin (np.abs (np.float64 (lat)), axis=iy) ) ) |
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343 | else : |
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344 | jeq = np.argmin (np.abs (np.float64 (lat[...,:, 0]))) |
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345 | return jeq |
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346 | |
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347 | #@numba.jit(forceobj=True) |
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348 | def lon1D (lon, lat=None) : |
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349 | ''' |
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350 | Returns 1D longitude for simple plots. |
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351 | |
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352 | lon : longitudes of the grid |
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353 | lat (optionnal) : latitudes of the grid |
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354 | ''' |
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355 | mmath = __mmath__ (lon) |
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356 | if np.max (lat) != None : |
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357 | je = jeq (lat) |
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358 | lon1D = lon.copy() [..., je, :] |
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359 | else : |
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360 | jpj, jpi = lon.shape [-2:] |
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361 | lon1D = lon.copy() [..., jpj//3, :] |
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362 | |
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363 | start = np.argmax (np.abs (np.diff (lon1D, axis=-1)) > 180.0, axis=-1) |
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364 | lon1D [..., start+1:] += 360 |
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365 | |
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366 | if mmath == xr : |
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367 | lon1D.attrs = lon.attrs |
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368 | lon1D = lon1D.assign_coords ( {'x':lon1D} ) |
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369 | |
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370 | return lon1D |
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371 | |
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372 | #@numba.jit(forceobj=True) |
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373 | def latreg (lat, diff=0.1) : |
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374 | ''' |
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375 | Returns maximum j index where gridlines are along latitudes in the northern hemisphere |
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376 | |
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377 | lat : latitudes of the grid (2D) |
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378 | diff [optional] : tolerance |
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379 | ''' |
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380 | mmath = __mmath__ (lat) |
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381 | if diff == None : |
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382 | dy = np.float64 (np.mean (np.abs (lat - np.roll (lat,shift=1,axis=-2, roll_coords=False)))) |
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383 | diff = dy/100. |
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384 | |
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385 | je = jeq (lat) |
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386 | jreg = np.where (lat[...,je:,:].max(axis=-1) - lat[...,je:,:].min(axis=-1)< diff)[-1][-1] + je |
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387 | latreg = np.float64 (lat[...,jreg,:].mean(axis=-1)) |
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388 | JREG = jreg |
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389 | |
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390 | return jreg, latreg |
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391 | |
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392 | #@numba.jit(forceobj=True) |
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393 | def lat1D (lat) : |
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394 | ''' |
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395 | Returns 1D latitudes for zonal means and simple plots. |
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396 | |
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397 | lat : latitudes of the grid (2D) |
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398 | ''' |
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399 | mmath = __mmath__ (lat) |
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400 | jpj, jpi = lat.shape[-2:] |
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401 | |
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402 | dy = np.float64 (np.mean (np.abs (lat - np.roll (lat, shift=1,axis=-2)))) |
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403 | je = jeq (lat) |
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404 | lat_eq = np.float64 (lat[...,je,:].mean(axis=-1)) |
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405 | |
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406 | jreg, lat_reg = latreg (lat) |
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407 | lat_ave = np.mean (lat, axis=-1) |
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408 | |
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409 | if (np.abs (lat_eq) < dy/100.) : # T, U or W grid |
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410 | dys = (90.-lat_reg) / (jpj-jreg-1)*0.5 |
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411 | yrange = 90.-dys-lat_reg |
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412 | else : # V or F grid |
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413 | yrange = 90. -lat_reg |
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414 | |
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415 | lat1D = mmath.where (lat_ave<lat_reg, lat_ave, lat_reg + yrange * (np.arange(jpj)-jreg)/(jpj-jreg-1)) |
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416 | |
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417 | if mmath == xr : |
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418 | lat1D.attrs = lat.attrs |
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419 | lat1D = lat1D.assign_coords ( {'y':lat1D} ) |
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420 | |
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421 | return lat1D |
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422 | |
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423 | #@numba.jit(forceobj=True) |
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424 | def latlon1D (lat, lon) : |
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425 | ''' |
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426 | Returns simple latitude and longitude (1D) for simple plots. |
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427 | |
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428 | lat, lon : latitudes and longitudes of the grid (2D) |
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429 | ''' |
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430 | return lat1D (lat), lon1D (lon, lat) |
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431 | |
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432 | #@numba.jit(forceobj=True) |
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433 | def mask_lonlat (ptab, x0, x1, y0, y1, lon, lat, sval=np.nan) : |
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434 | mmath = __mmath__ (ptab) |
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435 | try : |
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436 | lon = lon.copy().to_masked_array() |
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437 | lat = lat.copy().to_masked_array() |
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438 | except : pass |
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439 | |
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440 | mask = np.logical_and (np.logical_and(lat>y0, lat<y1), |
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441 | np.logical_or (np.logical_or (np.logical_and(lon>x0, lon<x1), np.logical_and(lon+360>x0, lon+360<x1)), |
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442 | np.logical_and(lon-360>x0, lon-360<x1))) |
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443 | tab = mmath.where (mask, ptab, np.nan) |
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444 | |
---|
445 | return tab |
---|
446 | |
---|
447 | #@numba.jit(forceobj=True) |
---|
448 | def extend (tab, Lon=False, jplus=25, jpi=None, nperio=4) : |
---|
449 | ''' |
---|
450 | Returns extended field eastward to have better plots, and box average crossing the boundary |
---|
451 | Works only for xarray and numpy data (?) |
---|
452 | |
---|
453 | tab : field to extend. |
---|
454 | Lon : (optional, default=False) : if True, add 360 in the extended parts of the field |
---|
455 | jpi : normal longitude dimension of the field. exrtend does nothing it the actual |
---|
456 | size of the field != jpi (avoid to extend several times) |
---|
457 | jplus (optional, default=25) : number of points added on the east side of the field |
---|
458 | |
---|
459 | ''' |
---|
460 | mmath = __mmath__ (tab) |
---|
461 | |
---|
462 | if tab.shape[-1] == 1 : extend = tab |
---|
463 | |
---|
464 | else : |
---|
465 | if jpi == None : jpi = tab.shape[-1] |
---|
466 | |
---|
467 | if Lon : xplus = -360.0 |
---|
468 | else : xplus = 0.0 |
---|
469 | |
---|
470 | if tab.shape[-1] > jpi : |
---|
471 | extend = tab |
---|
472 | else : |
---|
473 | if nperio == 0 or nperio == 4.2 : |
---|
474 | istart = 0 ; le=jpi+1 ; la=0 |
---|
475 | if nperio == 1 : |
---|
476 | istart = 0 ; le=jpi+1 ; la=0 |
---|
477 | if nperio == 4 or nperio == 6 : # OPA case with two halo points for periodicity |
---|
478 | istart = 1 ; le=jpi-2 ; la=1 # Perfect, except at the pole that should be masked by lbc_plot |
---|
479 | |
---|
480 | if mmath == xr : |
---|
481 | extend = np.concatenate ((tab.values[..., istart :istart+le+1 ] + xplus, |
---|
482 | tab.values[..., istart+la:istart+la+jplus] ), axis=-1) |
---|
483 | lon = tab.dims[-1] |
---|
484 | new_coords = [] |
---|
485 | for coord in tab.dims : |
---|
486 | if coord == lon : new_coords.append ( np.arange( extend.shape[-1])) |
---|
487 | else : new_coords.append ( tab.coords[coord].values) |
---|
488 | extend = xr.DataArray ( extend, dims=tab.dims, coords=new_coords ) |
---|
489 | else : |
---|
490 | extend = np.concatenate ((tab [..., istart :istart+le+1 ] + xplus, |
---|
491 | tab [..., istart+la:istart+la+jplus] ), axis=-1) |
---|
492 | return extend |
---|
493 | |
---|
494 | def orca2reg (ff, lat_name='nav_lat', lon_name='nav_lon', y_name='y', x_name='x') : |
---|
495 | ''' |
---|
496 | Assign an ORCA dataset on a regular grid. |
---|
497 | For use in the tropical region. |
---|
498 | |
---|
499 | Inputs : |
---|
500 | ff : xarray dataset |
---|
501 | lat_name, lon_name : name of latitude and longitude 2D field in ff |
---|
502 | y_name, x_name : namex of dimensions in ff |
---|
503 | |
---|
504 | Returns : xarray dataset with rectangular grid. Incorrect above 20°N |
---|
505 | ''' |
---|
506 | # Compute 1D longitude and latitude |
---|
507 | (lat, lon) = latlon1D (ff[lat_name], ff[lon_name]) |
---|
508 | |
---|
509 | # Assign lon and lat as dimensions of the dataset |
---|
510 | if y_name in ff.dims : |
---|
511 | lat = xr.DataArray (lat, coords=[lat,], dims=['lat',]) |
---|
512 | ff = ff.rename_dims ({y_name: "lat",}).assign_coords (lat=lat) |
---|
513 | if x_name in ff.dims : |
---|
514 | lon = xr.DataArray (lon, coords=[lon,], dims=['lon',]) |
---|
515 | ff = ff.rename_dims ({x_name: "lon",}).assign_coords (lon=lon) |
---|
516 | # Force dimensions to be in the right order |
---|
517 | coord_order = ['lat', 'lon'] |
---|
518 | for dim in [ 'depthw', 'depthv', 'depthu', 'deptht', 'depth', 'z', |
---|
519 | 'time_counter', 'time', 'tbnds', |
---|
520 | 'bnds', 'axis_nbounds', 'two2', 'two1', 'two', 'four',] : |
---|
521 | if dim in ff.dims : coord_order.insert (0, dim) |
---|
522 | |
---|
523 | ff = ff.transpose (*coord_order) |
---|
524 | return ff |
---|
525 | |
---|
526 | def lbc_init (ptab, nperio=None) : |
---|
527 | ''' |
---|
528 | Prepare for all lbc calls |
---|
529 | |
---|
530 | Set periodicity on input field |
---|
531 | nperio : Type of periodicity |
---|
532 | 0 : No periodicity |
---|
533 | 1, 4, 6 : Cyclic on i dimension (generaly longitudes) with 2 points halo |
---|
534 | 2 : Obsolete (was symmetric condition at southern boundary ?) |
---|
535 | 3, 4 : North fold T-point pivot (legacy ORCA2) |
---|
536 | 5, 6 : North fold F-point pivot (ORCA1, ORCA025, ORCA2 with new grid for paleo) |
---|
537 | cd_type : Grid specification : T, U, V or F |
---|
538 | |
---|
539 | See NEMO documentation for further details |
---|
540 | ''' |
---|
541 | jpj, jpi = ptab.shape[-2:] |
---|
542 | if nperio == None : nperio = __guessNperio__ (jpj, jpi, nperio) |
---|
543 | |
---|
544 | if nperio not in nperio_valid_range : |
---|
545 | raise Exception ('nperio=', nperio, ' is not in the valid range', nperio_valid_range) |
---|
546 | |
---|
547 | return jpj, jpi, nperio |
---|
548 | |
---|
549 | #@numba.jit(forceobj=True) |
---|
550 | def lbc (ptab, nperio=None, cd_type='T', psgn=1.0, nemo_4U_bug=False) : |
---|
551 | ''' |
---|
552 | Set periodicity on input field |
---|
553 | ptab : Input array (works for rank 2 at least : ptab[...., lat, lon]) |
---|
554 | nperio : Type of periodicity |
---|
555 | cd_type : Grid specification : T, U, V or F |
---|
556 | psgn : For change of sign for vector components (1 for scalars, -1 for vector components) |
---|
557 | |
---|
558 | See NEMO documentation for further details |
---|
559 | ''' |
---|
560 | jpj, jpi, nperio = lbc_init (ptab, nperio) |
---|
561 | psgn = ptab.dtype.type (psgn) |
---|
562 | mmath = __mmath__ (ptab) |
---|
563 | |
---|
564 | if mmath == xr : ztab = ptab.values.copy () |
---|
565 | else : ztab = ptab.copy () |
---|
566 | |
---|
567 | # |
---|
568 | #> East-West boundary conditions |
---|
569 | # ------------------------------ |
---|
570 | if nperio in [1, 4, 6] : |
---|
571 | # ... cyclic |
---|
572 | ztab [..., :, 0] = ztab [..., :, -2] |
---|
573 | ztab [..., :, -1] = ztab [..., :, 1] |
---|
574 | # |
---|
575 | #> North-South boundary conditions |
---|
576 | # -------------------------------- |
---|
577 | if nperio in [3, 4] : # North fold T-point pivot |
---|
578 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
579 | ztab [..., -1, 1: ] = psgn * ztab [..., -3, -1:0:-1 ] |
---|
580 | ztab [..., -1, 0 ] = psgn * ztab [..., -3, 2 ] |
---|
581 | ztab [..., -2, jpi//2: ] = psgn * ztab [..., -2, jpi//2:0:-1 ] |
---|
582 | |
---|
583 | if cd_type == 'U' : |
---|
584 | ztab [..., -1, 0:-1 ] = psgn * ztab [..., -3, -1:0:-1 ] |
---|
585 | ztab [..., -1, 0 ] = psgn * ztab [..., -3, 1 ] |
---|
586 | ztab [..., -1, -1 ] = psgn * ztab [..., -3, -2 ] |
---|
587 | |
---|
588 | if nemo_4U_bug : |
---|
589 | ztab [..., -2, jpi//2+1:-1] = psgn * ztab [..., -2, jpi//2-2:0:-1] |
---|
590 | ztab [..., -2, jpi//2-1 ] = psgn * ztab [..., -2, jpi//2 ] |
---|
591 | else : |
---|
592 | ztab [..., -2, jpi//2-1:-1] = psgn * ztab [..., -2, jpi//2:0:-1] |
---|
593 | |
---|
594 | if cd_type == 'V' : |
---|
595 | ztab [..., -2, 1: ] = psgn * ztab [..., -3, jpi-1:0:-1 ] |
---|
596 | ztab [..., -1, 1: ] = psgn * ztab [..., -4, -1:0:-1 ] |
---|
597 | ztab [..., -1, 0 ] = psgn * ztab [..., -4, 2 ] |
---|
598 | |
---|
599 | if cd_type == 'F' : |
---|
600 | ztab [..., -2, 0:-1 ] = psgn * ztab [..., -3, -1:0:-1 ] |
---|
601 | ztab [..., -1, 0:-1 ] = psgn * ztab [..., -4, -1:0:-1 ] |
---|
602 | ztab [..., -1, 0 ] = psgn * ztab [..., -4, 1 ] |
---|
603 | ztab [..., -1, -1 ] = psgn * ztab [..., -4, -2 ] |
---|
604 | |
---|
605 | if nperio in [4.2] : # North fold T-point pivot |
---|
606 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
607 | ztab [..., -1, jpi//2: ] = psgn * ztab [..., -1, jpi//2:0:-1 ] |
---|
608 | |
---|
609 | if cd_type == 'U' : |
---|
610 | ztab [..., -1, jpi//2-1:-1] = psgn * ztab [..., -1, jpi//2:0:-1] |
---|
611 | |
---|
612 | if cd_type == 'V' : |
---|
613 | ztab [..., -1, 1: ] = psgn * ztab [..., -2, jpi-1:0:-1 ] |
---|
614 | |
---|
615 | if cd_type == 'F' : |
---|
616 | ztab [..., -1, 0:-1 ] = psgn * ztab [..., -2, -1:0:-1 ] |
---|
617 | |
---|
618 | if nperio in [5, 6] : # North fold F-point pivot |
---|
619 | if cd_type in ['T', 'W'] : |
---|
620 | ztab [..., -1, 0: ] = psgn * ztab [..., -2, -1::-1 ] |
---|
621 | |
---|
622 | if cd_type == 'U' : |
---|
623 | ztab [..., -1, 0:-1 ] = psgn * ztab [..., -2, -2::-1 ] |
---|
624 | ztab [..., -1, -1 ] = psgn * ztab [..., -2, 0 ] # Bug ? |
---|
625 | |
---|
626 | if cd_type == 'V' : |
---|
627 | ztab [..., -1, 0: ] = psgn * ztab [..., -3, -1::-1 ] |
---|
628 | ztab [..., -2, jpi//2: ] = psgn * ztab [..., -2, jpi//2-1::-1 ] |
---|
629 | |
---|
630 | if cd_type == 'F' : |
---|
631 | ztab [..., -1, 0:-1 ] = psgn * ztab [..., -3, -2::-1 ] |
---|
632 | ztab [..., -1, -1 ] = psgn * ztab [..., -3, 0 ] |
---|
633 | ztab [..., -2, jpi//2:-1] = psgn * ztab [..., -2, jpi//2-2::-1 ] |
---|
634 | |
---|
635 | # |
---|
636 | #> East-West boundary conditions |
---|
637 | # ------------------------------ |
---|
638 | if nperio in [1, 4, 6] : |
---|
639 | # ... cyclic |
---|
640 | ztab [..., :, 0] = ztab [..., :, -2] |
---|
641 | ztab [..., :, -1] = ztab [..., :, 1] |
---|
642 | |
---|
643 | if mmath == xr : |
---|
644 | ztab = xr.DataArray ( ztab, dims=ptab.dims, coords=ptab.coords) |
---|
645 | ztab.attrs = ptab.attrs |
---|
646 | |
---|
647 | return ztab |
---|
648 | |
---|
649 | #@numba.jit(forceobj=True) |
---|
650 | def lbc_mask (ptab, nperio=None, cd_type='T', sval=np.nan) : |
---|
651 | # |
---|
652 | ''' |
---|
653 | Mask fields on duplicated points |
---|
654 | ptab : Input array. Rank 2 at least : ptab [...., lat, lon] |
---|
655 | nperio : Type of periodicity |
---|
656 | cd_type : Grid specification : T, U, V or F |
---|
657 | |
---|
658 | See NEMO documentation for further details |
---|
659 | ''' |
---|
660 | jpj, jpi, nperio = lbc_init (ptab, nperio) |
---|
661 | ztab = ptab.copy () |
---|
662 | |
---|
663 | # |
---|
664 | #> East-West boundary conditions |
---|
665 | # ------------------------------ |
---|
666 | if nperio in [1, 4, 6] : |
---|
667 | # ... cyclic |
---|
668 | ztab [..., :, 0] = sval |
---|
669 | ztab [..., :, -1] = sval |
---|
670 | |
---|
671 | # |
---|
672 | #> South (in which nperio cases ?) |
---|
673 | # -------------------------------- |
---|
674 | if nperio in [1, 3, 4, 5, 6] : |
---|
675 | ztab [..., 0, :] = sval |
---|
676 | |
---|
677 | # |
---|
678 | #> North-South boundary conditions |
---|
679 | # -------------------------------- |
---|
680 | if nperio in [3, 4] : # North fold T-point pivot |
---|
681 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
682 | ztab [..., -1, : ] = sval |
---|
683 | ztab [..., -2, :jpi//2 ] = sval |
---|
684 | |
---|
685 | if cd_type == 'U' : |
---|
686 | ztab [..., -1, : ] = sval |
---|
687 | ztab [..., -2, jpi//2+1: ] = sval |
---|
688 | |
---|
689 | if cd_type == 'V' : |
---|
690 | ztab [..., -2, : ] = sval |
---|
691 | ztab [..., -1, : ] = sval |
---|
692 | |
---|
693 | if cd_type == 'F' : |
---|
694 | ztab [..., -2, : ] = sval |
---|
695 | ztab [..., -1, : ] = sval |
---|
696 | |
---|
697 | if nperio in [4.2] : # North fold T-point pivot |
---|
698 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
699 | ztab [..., -1, jpi//2 : ] = sval |
---|
700 | |
---|
701 | if cd_type == 'U' : |
---|
702 | ztab [..., -1, jpi//2-1:-1] = sval |
---|
703 | |
---|
704 | if cd_type == 'V' : |
---|
705 | ztab [..., -1, 1: ] = sval |
---|
706 | |
---|
707 | if cd_type == 'F' : |
---|
708 | ztab [..., -1, 0:-1 ] = sval |
---|
709 | |
---|
710 | if nperio in [5, 6] : # North fold F-point pivot |
---|
711 | if cd_type in ['T', 'W'] : |
---|
712 | ztab [..., -1, 0: ] = sval |
---|
713 | |
---|
714 | if cd_type == 'U' : |
---|
715 | ztab [..., -1, 0:-1 ] = sval |
---|
716 | ztab [..., -1, -1 ] = sval |
---|
717 | |
---|
718 | if cd_type == 'V' : |
---|
719 | ztab [..., -1, 0: ] = sval |
---|
720 | ztab [..., -2, jpi//2: ] = sval |
---|
721 | |
---|
722 | if cd_type == 'F' : |
---|
723 | ztab [..., -1, 0:-1 ] = sval |
---|
724 | ztab [..., -1, -1 ] = sval |
---|
725 | ztab [..., -2, jpi//2+1:-1] = sval |
---|
726 | |
---|
727 | return ztab |
---|
728 | |
---|
729 | #@numba.jit(forceobj=True) |
---|
730 | def lbc_plot (ptab, nperio=None, cd_type='T', psgn=1.0, sval=np.nan) : |
---|
731 | ''' |
---|
732 | Set periodicity on input field, adapted for plotting for any cartopy projection |
---|
733 | ptab : Input array. Rank 2 at least : ptab[...., lat, lon] |
---|
734 | nperio : Type of periodicity |
---|
735 | cd_type : Grid specification : T, U, V or F |
---|
736 | psgn : For change of sign for vector components (1 for scalars, -1 for vector components) |
---|
737 | |
---|
738 | See NEMO documentation for further details |
---|
739 | ''' |
---|
740 | |
---|
741 | jpj, jpi, nperio = lbc_init (ptab, nperio) |
---|
742 | psgn = ptab.dtype.type (psgn) |
---|
743 | ztab = ptab.copy () |
---|
744 | # |
---|
745 | #> East-West boundary conditions |
---|
746 | # ------------------------------ |
---|
747 | if nperio in [1, 4, 6] : |
---|
748 | # ... cyclic |
---|
749 | ztab [..., :, 0] = ztab [..., :, -2] |
---|
750 | ztab [..., :, -1] = ztab [..., :, 1] |
---|
751 | |
---|
752 | #> Masks south |
---|
753 | # ------------ |
---|
754 | if nperio in [4, 6] : ztab [..., 0, : ] = sval |
---|
755 | |
---|
756 | # |
---|
757 | #> North-South boundary conditions |
---|
758 | # -------------------------------- |
---|
759 | if nperio in [3, 4] : # North fold T-point pivot |
---|
760 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
761 | ztab [..., -1, : ] = sval |
---|
762 | #ztab [..., -2, jpi//2: ] = sval |
---|
763 | ztab [..., -2, :jpi//2 ] = sval # Give better plots than above |
---|
764 | if cd_type == 'U' : |
---|
765 | ztab [..., -1, : ] = sval |
---|
766 | |
---|
767 | if cd_type == 'V' : |
---|
768 | ztab [..., -2, : ] = sval |
---|
769 | ztab [..., -1, : ] = sval |
---|
770 | |
---|
771 | if cd_type == 'F' : |
---|
772 | ztab [..., -2, : ] = sval |
---|
773 | ztab [..., -1, : ] = sval |
---|
774 | |
---|
775 | if nperio in [4.2] : # North fold T-point pivot |
---|
776 | if cd_type in [ 'T', 'W' ] : # T-, W-point |
---|
777 | ztab [..., -1, jpi//2: ] = sval |
---|
778 | |
---|
779 | if cd_type == 'U' : |
---|
780 | ztab [..., -1, jpi//2-1:-1] = sval |
---|
781 | |
---|
782 | if cd_type == 'V' : |
---|
783 | ztab [..., -1, 1: ] = sval |
---|
784 | |
---|
785 | if cd_type == 'F' : |
---|
786 | ztab [..., -1, 0:-1 ] = sval |
---|
787 | |
---|
788 | if nperio in [5, 6] : # North fold F-point pivot |
---|
789 | if cd_type in ['T', 'W'] : |
---|
790 | ztab [..., -1, : ] = sval |
---|
791 | |
---|
792 | if cd_type == 'U' : |
---|
793 | ztab [..., -1, : ] = sval |
---|
794 | |
---|
795 | if cd_type == 'V' : |
---|
796 | ztab [..., -1, : ] = sval |
---|
797 | ztab [..., -2, jpi//2: ] = sval |
---|
798 | |
---|
799 | if cd_type == 'F' : |
---|
800 | ztab [..., -1, : ] = sval |
---|
801 | ztab [..., -2, jpi//2+1:-1] = sval |
---|
802 | |
---|
803 | return ztab |
---|
804 | |
---|
805 | #@numba.jit(forceobj=True) |
---|
806 | def lbc_add (ptab, nperio=None, cd_type=None, psgn=1, sval=None) : |
---|
807 | ''' |
---|
808 | Handle NEMO domain changes between NEMO 4.0 to NEMO 4.2 |
---|
809 | Peridodicity halo has been removed |
---|
810 | This routine adds the halos if needed |
---|
811 | |
---|
812 | ptab : Input array (works |
---|
813 | rank 2 at least : ptab[...., lat, lon] |
---|
814 | nperio : Type of periodicity |
---|
815 | |
---|
816 | See NEMO documentation for further details |
---|
817 | ''' |
---|
818 | mmath = __mmath__ (ptab) |
---|
819 | jpj, jpi, nperio = lbc_init (ptab, nperio) |
---|
820 | |
---|
821 | t_shape = np.array (ptab.shape) |
---|
822 | |
---|
823 | if nperio == 4.2 or nperio == 6.2 : |
---|
824 | |
---|
825 | ext_shape = t_shape |
---|
826 | ext_shape[-1] = ext_shape[-1] + 2 |
---|
827 | ext_shape[-2] = ext_shape[-2] + 1 |
---|
828 | |
---|
829 | if mmath == xr : |
---|
830 | ptab_ext = xr.DataArray (np.zeros (ext_shape), dims=ptab.dims) |
---|
831 | ptab_ext.values[..., :-1, 1:-1] = ptab.values.copy () |
---|
832 | else : |
---|
833 | ptab_ext = np.zeros (ext_shape) |
---|
834 | ptab_ext[..., :-1, 1:-1] = ptab.copy () |
---|
835 | |
---|
836 | #if sval != None : ptab_ext[..., 0, :] = sval |
---|
837 | |
---|
838 | if nperio == 4.2 : ptab_ext = lbc (ptab_ext, nperio=4, cd_type=cd_type, psgn=psgn) |
---|
839 | if nperio == 6.2 : ptab_ext = lbc (ptab_ext, nperio=6, cd_type=cd_type, psgn=psgn) |
---|
840 | |
---|
841 | if mmath == xr : |
---|
842 | ptab_ext.attrs = ptab.attrs |
---|
843 | |
---|
844 | else : ptab_ext = lbc (ptab, nperio=nperio, cd_type=cd_type, psgn=psgn) |
---|
845 | |
---|
846 | return ptab_ext |
---|
847 | |
---|
848 | def lbc_del (ptab, nperio=None, cd_type='T', psgn=1) : |
---|
849 | ''' |
---|
850 | Handle NEMO domain changes between NEMO 4.0 to NEMO 4.2 |
---|
851 | Periodicity halo has been removed |
---|
852 | This routine removes the halos if needed |
---|
853 | |
---|
854 | ptab : Input array (works |
---|
855 | rank 2 at least : ptab[...., lat, lon] |
---|
856 | nperio : Type of periodicity |
---|
857 | |
---|
858 | See NEMO documentation for further details |
---|
859 | ''' |
---|
860 | |
---|
861 | jpj, jpi, nperio = lbc_init (ptab, nperio) |
---|
862 | |
---|
863 | if nperio == 4.2 or nperio == 6.2 : |
---|
864 | return lbc (ptab[..., :-1, 1:-1], nperio=nperio, cd_type=cd_type, psgn=psgn) |
---|
865 | else : |
---|
866 | return ptab |
---|
867 | |
---|
868 | #@numba.jit(forceobj=True) |
---|
869 | def lbc_index (jj, ii, jpj, jpi, nperio=None, cd_type='T') : |
---|
870 | ''' |
---|
871 | For indexes of a NEMO point, give the corresponding point inside the util domain |
---|
872 | jj, ii : indexes |
---|
873 | jpi, jpi : size of domain |
---|
874 | nperio : type of periodicity |
---|
875 | cd_type : grid specification : T, U, V or F |
---|
876 | |
---|
877 | See NEMO documentation for further details |
---|
878 | ''' |
---|
879 | |
---|
880 | if nperio == None : nperio = __guessNperio__ (jpj, jpi, nperio) |
---|
881 | |
---|
882 | ## For the sake of simplicity, switch to the convention of original lbc Fortran routine from NEMO |
---|
883 | ## : starts indexes at 1 |
---|
884 | jy = jj + 1 ; ix = ii + 1 |
---|
885 | |
---|
886 | mmath = __mmath__ (jj) |
---|
887 | if mmath == None : mmath=np |
---|
888 | |
---|
889 | # |
---|
890 | #> East-West boundary conditions |
---|
891 | # ------------------------------ |
---|
892 | if nperio in [1, 4, 6] : |
---|
893 | #... cyclic |
---|
894 | ix = mmath.where (ix==jpi, 2 , ix) |
---|
895 | ix = mmath.where (ix== 1 ,jpi-1, ix) |
---|
896 | |
---|
897 | # |
---|
898 | def modIJ (cond, jy_new, ix_new) : |
---|
899 | jy_r = mmath.where (cond, jy_new, jy) |
---|
900 | ix_r = mmath.where (cond, ix_new, ix) |
---|
901 | return jy_r, ix_r |
---|
902 | # |
---|
903 | #> North-South boundary conditions |
---|
904 | # -------------------------------- |
---|
905 | if nperio in [ 3 , 4 ] : |
---|
906 | if cd_type in [ 'T' , 'W' ] : |
---|
907 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix>=2 ), jpj-2, jpi-ix+2) |
---|
908 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==1 ), jpj-1, 3 ) |
---|
909 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, ix>=jpi//2+1), jy , jpi-ix+2) |
---|
910 | |
---|
911 | if cd_type in [ 'U' ] : |
---|
912 | (jy, ix) = modIJ (np.logical_and (jy==jpj , np.logical_and (ix>=1, ix <= jpi-1) ), jy , jpi-ix+1) |
---|
913 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==1 ) , jpj-2, 2 ) |
---|
914 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==jpi) , jpj-2, jpi-1 ) |
---|
915 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, np.logical_and (ix>=jpi//2, ix<=jpi-1)), jy , jpi-ix+1) |
---|
916 | |
---|
917 | if cd_type in [ 'V' ] : |
---|
918 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, ix>=2 ), jpj-2, jpi-ix+2) |
---|
919 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix>=2 ), jpj-3, jpi-ix+2) |
---|
920 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==1 ), jpj-3, 3 ) |
---|
921 | |
---|
922 | if cd_type in [ 'F' ] : |
---|
923 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, ix<=jpi-1), jpj-2, jpi-ix+1) |
---|
924 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix<=jpi-1), jpj-3, jpi-ix+1) |
---|
925 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==1 ), jpj-3, 2 ) |
---|
926 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==jpi ), jpj-3, jpi-1 ) |
---|
927 | |
---|
928 | if nperio in [ 5 , 6 ] : |
---|
929 | if cd_type in [ 'T' , 'W' ] : # T-, W-point |
---|
930 | (jy, ix) = modIJ (jy==jpj, jpj-1, jpi-ix+1) |
---|
931 | |
---|
932 | if cd_type in [ 'U' ] : # U-point |
---|
933 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix<=jpi-1 ), jpj-1, jpi-ix ) |
---|
934 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix==jpi ), jpi-1, 1 ) |
---|
935 | |
---|
936 | if cd_type in [ 'V' ] : # V-point |
---|
937 | (jy, ix) = modIJ (jy==jpj , jy , jpi-ix+1) |
---|
938 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, ix>=jpi//2+1), jy , jpi-ix+1) |
---|
939 | |
---|
940 | if cd_type in [ 'F' ] : # F-point |
---|
941 | (jy, ix) = modIJ (np.logical_and (jy==jpj , ix<=jpi-1 ), jpj-2, jpi-ix ) |
---|
942 | (jy, ix) = modIJ (np.logical_and (ix==jpj , ix==jpi ), jpj-2, 1 ) |
---|
943 | (jy, ix) = modIJ (np.logical_and (jy==jpj-1, ix>=jpi//2+1), jy , jpi-ix ) |
---|
944 | |
---|
945 | ## Restore convention to Python/C : indexes start at 0 |
---|
946 | jy += -1 ; ix += -1 |
---|
947 | |
---|
948 | if isinstance (jj, int) : jy = jy.item () |
---|
949 | if isinstance (ii, int) : ix = ix.item () |
---|
950 | |
---|
951 | return jy, ix |
---|
952 | |
---|
953 | #def geo2en (pxx, pyy, pzz, glam, gphi) : |
---|
954 | ''' |
---|
955 | Change vector from geocentric to east/north |
---|
956 | |
---|
957 | Inputs : |
---|
958 | pxx, pyy, pzz : components on the geocentric system |
---|
959 | glam, gphi : longitude and latitude of the points |
---|
960 | ''' |
---|
961 | |
---|
962 | gsinlon = np.sin (rad * glam) |
---|
963 | gcoslon = np.cos (rad * glam) |
---|
964 | gsinlat = np.sin (rad * gphi) |
---|
965 | gcoslat = np.cos (rad * gphi) |
---|
966 | |
---|
967 | pte = - pxx * gsinlon + pyy * gcoslon |
---|
968 | ptn = - pxx * gcoslon * gsinlat - pyy * gsinlon * gsinlat + pzz * gcoslat |
---|
969 | |
---|
970 | return pte, ptn |
---|
971 | |
---|
972 | #def en2geo (pte, ptn, glam, gphi) : |
---|
973 | ''' |
---|
974 | Change vector from east/north to geocentric |
---|
975 | |
---|
976 | Inputs : |
---|
977 | pte, ptn : eastward/northward components |
---|
978 | glam, gphi : longitude and latitude of the points |
---|
979 | ''' |
---|
980 | |
---|
981 | gsinlon = np.sin (rad * glam) |
---|
982 | gcoslon = np.cos (rad * glam) |
---|
983 | gsinlat = np.sin (rad * gphi) |
---|
984 | gcoslat = np.cos (rad * gphi) |
---|
985 | |
---|
986 | pxx = - pte * gsinlon - ptn * gcoslon * gsinlat |
---|
987 | pyy = pte * gcoslon - ptn * gsinlon * gsinlat |
---|
988 | pzz = ptn * gcoslat |
---|
989 | |
---|
990 | return pxx, pyy, pzz |
---|
991 | |
---|
992 | #def findJI (lat_data, lon_data, lat_grid, lon_grid, mask=1.0, verbose=False) : |
---|
993 | ''' |
---|
994 | Description: seeks J,I indices of the grid point which is the closest of a given point |
---|
995 | Usage: go FindJI <data latitude> <data longitude> <grid latitudes> <grid longitudes> [mask] |
---|
996 | <longitude fields> <latitude field> are 2D fields on J/I (Y/X) dimensions |
---|
997 | mask : if given, seek only non masked grid points (i.e with mask=1) |
---|
998 | |
---|
999 | Example : findIJ (40, -20, nav_lat, nav_lon, mask=1.0) |
---|
1000 | |
---|
1001 | Note : all longitudes and latitudes in degrees |
---|
1002 | |
---|
1003 | Note : may work with 1D lon/lat (?) |
---|
1004 | ''' |
---|
1005 | # Get grid dimensions |
---|
1006 | if len (lon_grid.shape) == 2 : (jpj, jpi) = lon_grid.shape |
---|
1007 | else : jpj = len(lat_grid) ; jpi=len(lon_grid) |
---|
1008 | |
---|
1009 | mmath = __mmath__ (lat_grid) |
---|
1010 | |
---|
1011 | # Compute distance from the point to all grid points (in radian) |
---|
1012 | arg = np.sin (rad*lat_data) * np.sin (rad*lat_grid) \ |
---|
1013 | + np.cos (rad*lat_data) * np.cos (rad*lat_grid) * np.cos(rad*(lon_data-lon_grid)) |
---|
1014 | distance = np.arccos (arg) + 4.0*rpi*(1.0-mask) # Send masked points to 'infinite' |
---|
1015 | |
---|
1016 | # Truncates to alleviate some precision problem with some grids |
---|
1017 | prec = int (1E7) |
---|
1018 | distance = (distance*prec).astype(int) / prec |
---|
1019 | |
---|
1020 | # Compute minimum of distance, and index of minimum |
---|
1021 | # |
---|
1022 | distance_min = distance.min () |
---|
1023 | jimin = int (distance.argmin ()) |
---|
1024 | |
---|
1025 | # Compute 2D indices |
---|
1026 | jmin = jimin // jpi ; imin = jimin - jmin*jpi |
---|
1027 | |
---|
1028 | # Compute distance achieved |
---|
1029 | mindist = distance[jmin, imin] |
---|
1030 | |
---|
1031 | # Compute azimuth |
---|
1032 | dlon = lon_data-lon_grid[jmin,imin] |
---|
1033 | arg = np.sin (rad*dlon) / (np.cos(rad*lat_data)*np.tan(rad*lat_grid[jmin,imin]) - np.sin(rad*lat_data)*np.cos(rad*dlon)) |
---|
1034 | azimuth = dar*np.arctan (arg) |
---|
1035 | |
---|
1036 | # Result |
---|
1037 | if verbose : |
---|
1038 | print ('I={:d} J={:d} - Data:{:5.1f}°N {:5.1f}°E - Grid:{:4.1f}°N {:4.1f}°E - Dist: {:6.1f}km {:5.2f}° - Azimuth: {:3.2f}rad - {:5.1f}°' |
---|
1039 | .format (imin, jmin, lat_data, lon_data, lat_grid[jmin,imin], lon_grid[jmin,imin], ra*distance[jmin,imin], dar*distance[jmin,imin], rad*azimuth, azimuth)) |
---|
1040 | |
---|
1041 | return jmin, imin |
---|
1042 | |
---|
1043 | #def clo_lon (lon, lon0) : |
---|
1044 | '''Choose closest to lon0 longitude, adding or substacting 360° if needed''' |
---|
1045 | mmath = __mmath__ (lon, np) |
---|
1046 | |
---|
1047 | clo_lon = lon |
---|
1048 | clo_lon = mmath.where (clo_lon > lon0 + 180., clo_lon-360., clo_lon) |
---|
1049 | clo_lon = mmath.where (clo_lon < lon0 - 180., clo_lon+360., clo_lon) |
---|
1050 | clo_lon = mmath.where (clo_lon > lon0 + 180., clo_lon-360., clo_lon) |
---|
1051 | clo_lon = mmath.where (clo_lon < lon0 - 180., clo_lon+360., clo_lon) |
---|
1052 | if clo_lon.shape == () : clo_lon = clo_lon.item () |
---|
1053 | return clo_lon |
---|
1054 | |
---|
1055 | #def angle_full (glamt, gphit, glamu, gphiu, glamv, gphiv, glamf, gphif, nperio=None) : |
---|
1056 | '''Compute sinus and cosinus of model line direction with respect to east''' |
---|
1057 | mmath = __mmath__ (glamt) |
---|
1058 | |
---|
1059 | zlamt = lbc_add (glamt, nperio, 'T', 1.) |
---|
1060 | zphit = lbc_add (gphit, nperio, 'T', 1.) |
---|
1061 | zlamu = lbc_add (glamu, nperio, 'U', 1.) |
---|
1062 | zphiu = lbc_add (gphiu, nperio, 'U', 1.) |
---|
1063 | zlamv = lbc_add (glamv, nperio, 'V', 1.) |
---|
1064 | zphiv = lbc_add (gphiv, nperio, 'V', 1.) |
---|
1065 | zlamf = lbc_add (glamf, nperio, 'F', 1.) |
---|
1066 | zphif = lbc_add (gphif, nperio, 'F', 1.) |
---|
1067 | |
---|
1068 | # north pole direction & modulous (at T-point) |
---|
1069 | zxnpt = 0. - 2.0 * np.cos (rad*zlamt) * np.tan (rpi/4.0 - rad*zphit/2.0) |
---|
1070 | zynpt = 0. - 2.0 * np.sin (rad*zlamt) * np.tan (rpi/4.0 - rad*zphit/2.0) |
---|
1071 | znnpt = zxnpt*zxnpt + zynpt*zynpt |
---|
1072 | |
---|
1073 | # north pole direction & modulous (at U-point) |
---|
1074 | zxnpu = 0. - 2.0 * np.cos (rad*zlamu) * np.tan (rpi/4.0 - rad*zphiu/2.0) |
---|
1075 | zynpu = 0. - 2.0 * np.sin (rad*zlamu) * np.tan (rpi/4.0 - rad*zphiu/2.0) |
---|
1076 | znnpu = zxnpu*zxnpu + zynpu*zynpu |
---|
1077 | |
---|
1078 | # north pole direction & modulous (at V-point) |
---|
1079 | zxnpv = 0. - 2.0 * np.cos (rad*zlamv) * np.tan (rpi/4.0 - rad*zphiv/2.0) |
---|
1080 | zynpv = 0. - 2.0 * np.sin (rad*zlamv) * np.tan (rpi/4.0 - rad*zphiv/2.0) |
---|
1081 | znnpv = zxnpv*zxnpv + zynpv*zynpv |
---|
1082 | |
---|
1083 | # north pole direction & modulous (at F-point) |
---|
1084 | zxnpf = 0. - 2.0 * np.cos( rad*zlamf ) * np.tan ( rpi/4. - rad*zphif/2. ) |
---|
1085 | zynpf = 0. - 2.0 * np.sin( rad*zlamf ) * np.tan ( rpi/4. - rad*zphif/2. ) |
---|
1086 | znnpf = zxnpf*zxnpf + zynpf*zynpf |
---|
1087 | |
---|
1088 | # j-direction: v-point segment direction (around T-point) |
---|
1089 | zlam = zlamv |
---|
1090 | zphi = zphiv |
---|
1091 | zlan = np.roll ( zlamv, axis=-2, shift=1) # glamv (ji,jj-1) |
---|
1092 | zphh = np.roll ( zphiv, axis=-2, shift=1) # gphiv (ji,jj-1) |
---|
1093 | zxvvt = 2.0 * np.cos ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1094 | - 2.0 * np.cos ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1095 | zyvvt = 2.0 * np.sin ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1096 | - 2.0 * np.sin ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1097 | znvvt = np.sqrt ( znnpt * ( zxvvt*zxvvt + zyvvt*zyvvt ) ) |
---|
1098 | |
---|
1099 | # j-direction: f-point segment direction (around u-point) |
---|
1100 | zlam = zlamf |
---|
1101 | zphi = zphif |
---|
1102 | zlan = np.roll (zlamf, axis=-2, shift=1) # glamf (ji,jj-1) |
---|
1103 | zphh = np.roll (zphif, axis=-2, shift=1) # gphif (ji,jj-1) |
---|
1104 | zxffu = 2.0 * np.cos ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1105 | - 2.0 * np.cos ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1106 | zyffu = 2.0 * np.sin ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1107 | - 2.0 * np.sin ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1108 | znffu = np.sqrt ( znnpu * ( zxffu*zxffu + zyffu*zyffu ) ) |
---|
1109 | |
---|
1110 | # i-direction: f-point segment direction (around v-point) |
---|
1111 | zlam = zlamf |
---|
1112 | zphi = zphif |
---|
1113 | zlan = np.roll (zlamf, axis=-1, shift=1) # glamf (ji-1,jj) |
---|
1114 | zphh = np.roll (zphif, axis=-1, shift=1) # gphif (ji-1,jj) |
---|
1115 | zxffv = 2.0 * np.cos ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1116 | - 2.0 * np.cos ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1117 | zyffv = 2.0 * np.sin ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1118 | - 2.0 * np.sin ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1119 | znffv = np.sqrt ( znnpv * ( zxffv*zxffv + zyffv*zyffv ) ) |
---|
1120 | |
---|
1121 | # j-direction: u-point segment direction (around f-point) |
---|
1122 | zlam = np.roll (zlamu, axis=-2, shift=-1) # glamu (ji,jj+1) |
---|
1123 | zphi = np.roll (zphiu, axis=-2, shift=-1) # gphiu (ji,jj+1) |
---|
1124 | zlan = zlamu |
---|
1125 | zphh = zphiu |
---|
1126 | zxuuf = 2. * np.cos ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1127 | - 2. * np.cos ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1128 | zyuuf = 2. * np.sin ( rad*zlam ) * np.tan ( rpi/4. - rad*zphi/2. ) \ |
---|
1129 | - 2. * np.sin ( rad*zlan ) * np.tan ( rpi/4. - rad*zphh/2. ) |
---|
1130 | znuuf = np.sqrt ( znnpf * ( zxuuf*zxuuf + zyuuf*zyuuf ) ) |
---|
1131 | |
---|
1132 | |
---|
1133 | # cosinus and sinus using scalar and vectorial products |
---|
1134 | gsint = ( zxnpt*zyvvt - zynpt*zxvvt ) / znvvt |
---|
1135 | gcost = ( zxnpt*zxvvt + zynpt*zyvvt ) / znvvt |
---|
1136 | |
---|
1137 | gsinu = ( zxnpu*zyffu - zynpu*zxffu ) / znffu |
---|
1138 | gcosu = ( zxnpu*zxffu + zynpu*zyffu ) / znffu |
---|
1139 | |
---|
1140 | gsinf = ( zxnpf*zyuuf - zynpf*zxuuf ) / znuuf |
---|
1141 | gcosf = ( zxnpf*zxuuf + zynpf*zyuuf ) / znuuf |
---|
1142 | |
---|
1143 | gsinv = ( zxnpv*zxffv + zynpv*zyffv ) / znffv |
---|
1144 | gcosv =-( zxnpv*zyffv - zynpv*zxffv ) / znffv # (caution, rotation of 90 degres) |
---|
1145 | |
---|
1146 | #gsint = lbc (gsint, cd_type='T', nperio=nperio, psgn=-1.) |
---|
1147 | #gcost = lbc (gcost, cd_type='T', nperio=nperio, psgn=-1.) |
---|
1148 | #gsinu = lbc (gsinu, cd_type='U', nperio=nperio, psgn=-1.) |
---|
1149 | #gcosu = lbc (gcosu, cd_type='U', nperio=nperio, psgn=-1.) |
---|
1150 | #gsinv = lbc (gsinv, cd_type='V', nperio=nperio, psgn=-1.) |
---|
1151 | #gcosv = lbc (gcosv, cd_type='V', nperio=nperio, psgn=-1.) |
---|
1152 | #gsinf = lbc (gsinf, cd_type='F', nperio=nperio, psgn=-1.) |
---|
1153 | #gcosf = lbc (gcosf, cd_type='F', nperio=nperio, psgn=-1.) |
---|
1154 | |
---|
1155 | gsint = lbc_del (gsint, cd_type='T', nperio=nperio, psgn=-1.) |
---|
1156 | gcost = lbc_del (gcost, cd_type='T', nperio=nperio, psgn=-1.) |
---|
1157 | gsinu = lbc_del (gsinu, cd_type='U', nperio=nperio, psgn=-1.) |
---|
1158 | gcosu = lbc_del (gcosu, cd_type='U', nperio=nperio, psgn=-1.) |
---|
1159 | gsinv = lbc_del (gsinv, cd_type='V', nperio=nperio, psgn=-1.) |
---|
1160 | gcosv = lbc_del (gcosv, cd_type='V', nperio=nperio, psgn=-1.) |
---|
1161 | gsinf = lbc_del (gsinf, cd_type='F', nperio=nperio, psgn=-1.) |
---|
1162 | gcosf = lbc_del (gcosf, cd_type='F', nperio=nperio, psgn=-1.) |
---|
1163 | |
---|
1164 | if mmath == xr : |
---|
1165 | gsint = gsint.assign_coords ( glamt.coords ) |
---|
1166 | gcost = gcost.assign_coords ( glamt.coords ) |
---|
1167 | gsinu = gsinu.assign_coords ( glamu.coords ) |
---|
1168 | gcosu = gcosu.assign_coords ( glamu.coords ) |
---|
1169 | gsinv = gsinv.assign_coords ( glamv.coords ) |
---|
1170 | gcosv = gcosv.assign_coords ( glamv.coords ) |
---|
1171 | gsinf = gsinf.assign_coords ( glamf.coords ) |
---|
1172 | gcosf = gcosf.assign_coords ( glamf.coords ) |
---|
1173 | |
---|
1174 | return gsint, gcost, gsinu, gcosu, gsinv, gcosv, gsinf, gcosf |
---|
1175 | |
---|
1176 | def angle (glam, gphi, nperio, cd_type='T') : |
---|
1177 | '''Compute sinus and cosinus of model line direction with respect to east''' |
---|
1178 | mmath = __mmath__ (glam) |
---|
1179 | |
---|
1180 | zlam = lbc_add (glam, nperio, cd_type, 1.) |
---|
1181 | zphi = lbc_add (gphi, nperio, cd_type, 1.) |
---|
1182 | |
---|
1183 | # north pole direction & modulous |
---|
1184 | zxnp = 0. - 2.0 * np.cos (rad*zlam) * np.tan (rpi/4.0 - rad*zphi/2.0) |
---|
1185 | zynp = 0. - 2.0 * np.sin (rad*zlam) * np.tan (rpi/4.0 - rad*zphi/2.0) |
---|
1186 | znnp = zxnp*zxnp + zynp*zynp |
---|
1187 | |
---|
1188 | # j-direction: segment direction (around point) |
---|
1189 | zlan_n = np.roll (zlam, axis=-2, shift=-1) # glam [jj+1, ji] |
---|
1190 | zphh_n = np.roll (zphi, axis=-2, shift=-1) # gphi [jj+1, ji] |
---|
1191 | zlan_s = np.roll (zlam, axis=-2, shift= 1) # glam [jj-1, ji] |
---|
1192 | zphh_s = np.roll (zphi, axis=-2, shift= 1) # gphi [jj-1, ji] |
---|
1193 | |
---|
1194 | zxff = 2.0 * np.cos (rad*zlan_n) * np.tan (rpi/4.0 - rad*zphh_n/2.0) \ |
---|
1195 | - 2.0 * np.cos (rad*zlan_s) * np.tan (rpi/4.0 - rad*zphh_s/2.0) |
---|
1196 | zyff = 2.0 * np.sin (rad*zlan_n) * np.tan (rpi/4.0 - rad*zphh_n/2.0) \ |
---|
1197 | - 2.0 * np.sin (rad*zlan_s) * np.tan (rpi/4.0 - rad*zphh_s/2.0) |
---|
1198 | znff = np.sqrt (znnp * (zxff*zxff + zyff*zyff) ) |
---|
1199 | |
---|
1200 | gsin = (zxnp*zyff - zynp*zxff) / znff |
---|
1201 | gcos = (zxnp*zxff + zynp*zyff) / znff |
---|
1202 | |
---|
1203 | gsin = lbc_del (gsin, cd_type=cd_type, nperio=nperio, psgn=-1.) |
---|
1204 | gcos = lbc_del (gcos, cd_type=cd_type, nperio=nperio, psgn=-1.) |
---|
1205 | |
---|
1206 | if mmath == xr : |
---|
1207 | gsin = gsin.assign_coords ( glam.coords ) |
---|
1208 | gcos = gcos.assign_coords ( glam.coords ) |
---|
1209 | |
---|
1210 | return gsin, gcos |
---|
1211 | |
---|
1212 | def rot_en2ij ( u_e, v_n, gsin, gcos, nperio, cd_type ) : |
---|
1213 | ''' |
---|
1214 | ** Purpose : Rotate the Repere: Change vector componantes between |
---|
1215 | geographic grid --> stretched coordinates grid. |
---|
1216 | All components are on the same grid (T, U, V or F) |
---|
1217 | ''' |
---|
1218 | |
---|
1219 | u_i = + u_e * gcos + v_n * gsin |
---|
1220 | v_j = - u_e * gsin + v_n * gcos |
---|
1221 | |
---|
1222 | u_i = lbc (u_i, nperio=nperio, cd_type=cd_type, psgn=-1.0) |
---|
1223 | v_j = lbc (v_j, nperio=nperio, cd_type=cd_type, psgn=-1.0) |
---|
1224 | |
---|
1225 | return u_i, v_j |
---|
1226 | |
---|
1227 | def rot_ij2en ( u_i, v_j, gsin, gcos, nperio, cd_type='T' ) : |
---|
1228 | ''' |
---|
1229 | ** Purpose : Rotate the Repere: Change vector componantes from |
---|
1230 | stretched coordinates grid --> geographic grid |
---|
1231 | All components are on the same grid (T, U, V or F) |
---|
1232 | ''' |
---|
1233 | u_e = + u_i * gcos - v_j * gsin |
---|
1234 | v_n = + u_i * gsin + v_j * gcos |
---|
1235 | |
---|
1236 | u_e = lbc (u_e, nperio=nperio, cd_type=cd_type, psgn= 1.0) |
---|
1237 | v_n = lbc (v_n, nperio=nperio, cd_type=cd_type, psgn= 1.0) |
---|
1238 | |
---|
1239 | return u_e, v_n |
---|
1240 | |
---|
1241 | def rot_uv2en ( uo, vo, gsint, gcost, nperio, zdim='deptht' ) : |
---|
1242 | ''' |
---|
1243 | ** Purpose : Rotate the Repere: Change vector componantes from |
---|
1244 | stretched coordinates grid --> geographic grid |
---|
1245 | uo is on the U grid point, vo is on the V grid point |
---|
1246 | east-north components on the T grid point |
---|
1247 | ''' |
---|
1248 | mmath = __mmath__ (uo) |
---|
1249 | |
---|
1250 | ut = U2T (uo, nperio=nperio, psgn=-1.0, zdim=zdim) |
---|
1251 | vt = V2T (vo, nperio=nperio, psgn=-1.0, zdim=zdim) |
---|
1252 | |
---|
1253 | u_e = + ut * gcost - vt * gsint |
---|
1254 | v_n = + ut * gsint + vt * gcost |
---|
1255 | |
---|
1256 | u_e = lbc (u_e, nperio=nperio, cd_type='T', psgn=1.0) |
---|
1257 | v_n = lbc (v_n, nperio=nperio, cd_type='T', psgn=1.0) |
---|
1258 | |
---|
1259 | return u_e, v_n |
---|
1260 | |
---|
1261 | def rot_uv2enF ( uo, vo, gsinf, gcosf, nperio, zdim='deptht' ) : |
---|
1262 | ''' |
---|
1263 | ** Purpose : Rotate the Repere: Change vector componantes from |
---|
1264 | stretched coordinates grid --> geographic grid |
---|
1265 | uo is on the U grid point, vo is on the V grid point |
---|
1266 | east-north components on the T grid point |
---|
1267 | ''' |
---|
1268 | mmath = __mmath__ (uo) |
---|
1269 | |
---|
1270 | uf = U2F (uo, nperio=nperio, psgn=-1.0, zdim=zdim) |
---|
1271 | vf = V2F (vo, nperio=nperio, psgn=-1.0, zdim=zdim) |
---|
1272 | |
---|
1273 | u_e = + uf * gcosf - vf * gsinf |
---|
1274 | v_n = + uf * gsinf + vf * gcosf |
---|
1275 | |
---|
1276 | u_e = lbc (u_e, nperio=nperio, cd_type='F', psgn= 1.0) |
---|
1277 | v_n = lbc (v_n, nperio=nperio, cd_type='F', psgn= 1.0) |
---|
1278 | |
---|
1279 | return u_e, v_n |
---|
1280 | |
---|
1281 | #@numba.jit(forceobj=True) |
---|
1282 | def U2T (utab, nperio=None, psgn=-1.0, zdim='deptht', action='ave') : |
---|
1283 | '''Interpolate an array from U grid to T grid i-mean)''' |
---|
1284 | mmath = __mmath__ (utab) |
---|
1285 | utab_0 = mmath.where ( np.isnan(utab), 0., utab) |
---|
1286 | lperio, aperio = lbc_diag (nperio) |
---|
1287 | utab_0 = lbc_add (utab_0, nperio=nperio, cd_type='U', psgn=psgn) |
---|
1288 | ix, ax = __findAxis__ (utab_0, 'x') |
---|
1289 | iz, az = __findAxis__ (utab_0, 'z') |
---|
1290 | if action == 'ave' : ttab = 0.5 * (utab_0 + np.roll (utab_0, axis=ix, shift=1)) |
---|
1291 | if action == 'min' : ttab = np.minimum (utab_0 , np.roll (utab_0, axis=ix, shift=1)) |
---|
1292 | if action == 'max' : ttab = np.maximum (utab_0 , np.roll (utab_0, axis=ix, shift=1)) |
---|
1293 | if action == 'mult' : ttab = utab_0 * np.roll (utab_0, axis=ix, shift=1) |
---|
1294 | ttab = lbc_del (ttab, nperio=nperio, cd_type='T', psgn=psgn) |
---|
1295 | |
---|
1296 | if mmath == xr : |
---|
1297 | if ax != None : |
---|
1298 | ttab = ttab.assign_coords({ax:np.arange (ttab.shape[ix])+1.}) |
---|
1299 | if zdim != None and iz != None and az != 'olevel' : |
---|
1300 | ttab = ttab.rename( {az:zdim}) |
---|
1301 | return ttab |
---|
1302 | |
---|
1303 | #@numba.jit(forceobj=True) |
---|
1304 | def V2T (vtab, nperio=None, psgn=-1.0, zdim='deptht', action='ave') : |
---|
1305 | '''Interpolate an array from V grid to T grid (j-mean)''' |
---|
1306 | mmath = __mmath__ (vtab) |
---|
1307 | lperio, aperio = lbc_diag (nperio) |
---|
1308 | vtab_0 = mmath.where ( np.isnan(vtab), 0., vtab) |
---|
1309 | vtab_0 = lbc_add (vtab_0, nperio=nperio, cd_type='V', psgn=psgn) |
---|
1310 | iy, ay = __findAxis__ (vtab_0, 'y') |
---|
1311 | iz, az = __findAxis__ (vtab_0, 'z') |
---|
1312 | if action == 'ave' : ttab = 0.5 * (vtab_0 + np.roll (vtab_0, axis=iy, shift=1)) |
---|
1313 | if action == 'min' : ttab = np.minimum (vtab_0 , np.roll (vtab_0, axis=iy, shift=1)) |
---|
1314 | if action == 'max' : ttab = np.maximum (vtab_0 , np.roll (vtab_0, axis=iy, shift=1)) |
---|
1315 | if action == 'mult' : ttab = vtab_0 * np.roll (vtab_0, axis=iy, shift=1) |
---|
1316 | ttab = lbc_del (ttab, nperio=nperio, cd_type='T', psgn=psgn) |
---|
1317 | if mmath == xr : |
---|
1318 | if ay !=None : |
---|
1319 | ttab = ttab.assign_coords({ay:np.arange(ttab.shape[iy])+1.}) |
---|
1320 | if zdim != None and iz != None and az != 'olevel' : |
---|
1321 | ttab = ttab.rename( {az:zdim}) |
---|
1322 | return ttab |
---|
1323 | |
---|
1324 | #@numba.jit(forceobj=True) |
---|
1325 | def F2T (ftab, nperio=None, psgn=1.0, zdim='depthf', action='ave') : |
---|
1326 | '''Interpolate an array from F grid to T grid (i- and j- means)''' |
---|
1327 | mmath = __mmath__ (ftab) |
---|
1328 | ftab_0 = mmath.where ( np.isnan(ftab), 0., ftab) |
---|
1329 | ftab_0 = lbc_add (ftab_0 , nperio=nperio, cd_type='F', psgn=psgn) |
---|
1330 | ttab = V2T(F2V(ftab_0, nperio=nperio, psgn=psgn, zdim=zdim, action=action), nperio=nperio, psgn=psgn, zdim=zdim, action=action) |
---|
1331 | return lbc_del (ttab, nperio=nperio, cd_type='T', psgn=psgn) |
---|
1332 | |
---|
1333 | #@numba.jit(forceobj=True) |
---|
1334 | def T2U (ttab, nperio=None, psgn=1.0, zdim='depthu', action='ave') : |
---|
1335 | '''Interpolate an array from T grid to U grid (i-mean)''' |
---|
1336 | mmath = __mmath__ (ttab) |
---|
1337 | ttab_0 = mmath.where ( np.isnan(ttab), 0., ttab) |
---|
1338 | ttab_0 = lbc_add (ttab_0 , nperio=nperio, cd_type='T', psgn=psgn) |
---|
1339 | ix, ax = __findAxis__ (ttab_0, 'x') |
---|
1340 | iz, az = __findAxis__ (ttab_0, 'z') |
---|
1341 | if action == 'ave' : utab = 0.5 * (ttab_0 + np.roll (ttab_0, axis=ix, shift=-1)) |
---|
1342 | if action == 'min' : utab = np.minimum (ttab_0 , np.roll (ttab_0, axis=ix, shift=-1)) |
---|
1343 | if action == 'max' : utab = np.maximum (ttab_0 , np.roll (ttab_0, axis=ix, shift=-1)) |
---|
1344 | if action == 'mult' : utab = ttab_0 * np.roll (ttab_0, axis=ix, shift=-1) |
---|
1345 | utab = lbc_del (utab, nperio=nperio, cd_type='U', psgn=psgn) |
---|
1346 | |
---|
1347 | if mmath == xr : |
---|
1348 | if ax != None : |
---|
1349 | utab = ttab.assign_coords({ax:np.arange(utab.shape[ix])+1.}) |
---|
1350 | if zdim != None and iz != None and az != 'olevel' : |
---|
1351 | utab = utab.rename( {az:zdim}) |
---|
1352 | return utab |
---|
1353 | |
---|
1354 | #@numba.jit(forceobj=True) |
---|
1355 | def T2V (ttab, nperio=None, psgn=1.0, zdim='depthv', action='ave') : |
---|
1356 | '''Interpolate an array from T grid to V grid (j-mean)''' |
---|
1357 | mmath = __mmath__ (ttab) |
---|
1358 | ttab_0 = mmath.where ( np.isnan(ttab), 0., ttab) |
---|
1359 | ttab_0 = lbc_add (ttab_0 , nperio=nperio, cd_type='T', psgn=psgn) |
---|
1360 | iy, ay = __findAxis__ (ttab_0, 'y') |
---|
1361 | iz, az = __findAxis__ (ttab_0, 'z') |
---|
1362 | if action == 'ave' : vtab = 0.5 * (ttab_0 + np.roll (ttab_0, axis=iy, shift=-1)) |
---|
1363 | if action == 'min' : vtab = np.minimum (ttab_0 , np.roll (ttab_0, axis=iy, shift=-1)) |
---|
1364 | if action == 'max' : vtab = np.maximum (ttab_0 , np.roll (ttab_0, axis=iy, shift=-1)) |
---|
1365 | if action == 'mult' : vtab = ttab_0 * np.roll (ttab_0, axis=iy, shift=-1) |
---|
1366 | |
---|
1367 | vtab = lbc_del (vtab, nperio=nperio, cd_type='V', psgn=psgn) |
---|
1368 | if mmath == xr : |
---|
1369 | if ay != None : |
---|
1370 | vtab = vtab.assign_coords({ay:np.arange(vtab.shape[iy])+1.}) |
---|
1371 | if zdim != None and iz != None and az != 'olevel' : |
---|
1372 | vtab = vtab.rename( {az:zdim}) |
---|
1373 | return vtab |
---|
1374 | |
---|
1375 | #@numba.jit(forceobj=True) |
---|
1376 | def V2F (vtab, nperio=None, psgn=-1.0, zdim='depthf', action='ave') : |
---|
1377 | '''Interpolate an array from V grid to F grid (i-mean)''' |
---|
1378 | mmath = __mmath__ (vtab) |
---|
1379 | vtab_0 = mmath.where ( np.isnan(vtab), 0., vtab) |
---|
1380 | vtab_0 = lbc_add (vtab_0 , nperio=nperio, cd_type='V', psgn=psgn) |
---|
1381 | ix, ax = __findAxis__ (vtab_0, 'x') |
---|
1382 | iz, az = __findAxis__ (vtab_0, 'z') |
---|
1383 | if action == 'ave' : 0.5 * (vtab_0 + np.roll (vtab_0, axis=ix, shift=-1)) |
---|
1384 | if action == 'min' : np.minimum (vtab_0 , np.roll (vtab_0, axis=ix, shift=-1)) |
---|
1385 | if action == 'max' : np.maximum (vtab_0 , np.roll (vtab_0, axis=ix, shift=-1)) |
---|
1386 | if action == 'mult' : vtab_0 * np.roll (vtab_0, axis=ix, shift=-1) |
---|
1387 | ftab = lbc_del (ftab, nperio=nperio, cd_type='F', psgn=psgn) |
---|
1388 | |
---|
1389 | if mmath == xr : |
---|
1390 | if ax != None : |
---|
1391 | ftab = ftab.assign_coords({ax:np.arange(ftab.shape[ix])+1.}) |
---|
1392 | if zdim != None and iz != None and az != 'olevel' : |
---|
1393 | ftab = ftab.rename( {az:zdim}) |
---|
1394 | return lbc_del (ftab, nperio=nperio, cd_type='F', psgn=psgn) |
---|
1395 | |
---|
1396 | #@numba.jit(forceobj=True) |
---|
1397 | def U2F (utab, nperio=None, psgn=-1.0, zdim='depthf', action='ave') : |
---|
1398 | '''Interpolate an array from U grid to F grid i-mean)''' |
---|
1399 | mmath = __mmath__ (utab) |
---|
1400 | utab_0 = mmath.where ( np.isnan(utab), 0., utab) |
---|
1401 | utab_0 = lbc_add (utab_0 , nperio=nperio, cd_type='U', psgn=psgn) |
---|
1402 | iy, ay = __findAxis__ (utab_0, 'y') |
---|
1403 | iz, az = __findAxis__ (utab_0, 'z') |
---|
1404 | if action == 'ave' : ftab = 0.5 * (utab_0 + np.roll (utab_0, axis=iy, shift=-1)) |
---|
1405 | if action == 'min' : ftab = np.minimum (utab_0 , np.roll (utab_0, axis=iy, shift=-1)) |
---|
1406 | if action == 'max' : ftab = np.maximum (utab_0 , np.roll (utab_0, axis=iy, shift=-1)) |
---|
1407 | if action == 'mult' : ftab = utab_0 * np.roll (utab_0, axis=iy, shift=-1) |
---|
1408 | ftab = lbc_del (ftab, nperio=nperio, cd_type='F', psgn=psgn) |
---|
1409 | |
---|
1410 | if mmath == xr : |
---|
1411 | if ay != None : |
---|
1412 | ftab = ftab.assign_coords({'y':np.arange(ftab.shape[iy])+1.}) |
---|
1413 | if zdim != None and iz != None and az != 'olevel' : |
---|
1414 | ftab = ftab.rename( {az:zdim}) |
---|
1415 | return ftab |
---|
1416 | |
---|
1417 | #@numba.jit(forceobj=True) |
---|
1418 | def F2T (ftab, nperio=None, psgn=1.0, zdim='deptht', action='ave') : |
---|
1419 | '''Interpolate an array on F grid to T grid (i- and j- means)''' |
---|
1420 | mmath = __mmath__ (ftab) |
---|
1421 | ftab_0 = mmath.where ( np.isnan(ttab), 0., ttab) |
---|
1422 | ftab_0 = lbc_add (ftab_0 , nperio=nperio, cd_type='F', psgn=psgn) |
---|
1423 | ttab = U2T(F2U(ftab_0, nperio=nperio, psgn=psgn, zdim=zdim, action=action), nperio=nperio, psgn=psgn, zdim=zdim, action=action) |
---|
1424 | return lbc_del (ttab, nperio=nperio, cd_type='T', psgn=psgn) |
---|
1425 | |
---|
1426 | #@numba.jit(forceobj=True) |
---|
1427 | def T2F (ttab, nperio=None, psgn=1.0, zdim='deptht', action='mean') : |
---|
1428 | '''Interpolate an array on T grid to F grid (i- and j- means)''' |
---|
1429 | mmath = __mmath__ (ttab) |
---|
1430 | ttab_0 = mmath.where ( np.isnan(ttab), 0., ttab) |
---|
1431 | ttab_0 = lbc_add (ttab_0 , nperio=nperio, cd_type='T', psgn=psgn) |
---|
1432 | ftab = T2U(U2F(ttab, nperio=nperio, psgn=psgn, zdim=zdim, action=action), nperio=nperio, psgn=psgn, zdim=zdim, action=action) |
---|
1433 | |
---|
1434 | return lbc_del (ftab, nperio=nperio, cd_type='F', psgn=psgn) |
---|
1435 | |
---|
1436 | #@numba.jit(forceobj=True) |
---|
1437 | def F2U (ftab, nperio=None, psgn=1.0, zdim='depthu', action='ave') : |
---|
1438 | '''Interpolate an array on F grid to FUgrid (i-mean)''' |
---|
1439 | mmath = __mmath__ (ftab) |
---|
1440 | ftab_0 = mmath.where ( np.isnan(ftab), 0., ftab) |
---|
1441 | ftab_0 = lbc_add (ftab_0 , nperio=nperio, cd_type='F', psgn=psgn) |
---|
1442 | iy, ay = __findAxis__ (ftab_0, 'y') |
---|
1443 | iz, az = __findAxis__ (ftab_0, 'z') |
---|
1444 | if action == 'ave' : utab = 0.5 * (ftab_0 + np.roll (ftab_0, axis=iy, shift=-1)) |
---|
1445 | if action == 'min' : utab = np.minimum (ftab_0 , np.roll (ftab_0, axis=iy, shift=-1)) |
---|
1446 | if action == 'max' : utab = np.maximum (ftab_0 , np.roll (ftab_0, axis=iy, shift=-1)) |
---|
1447 | if action == 'mult' : utab = ftab_0 * np.roll (ftab_0, axis=iy, shift=-1) |
---|
1448 | |
---|
1449 | utab = lbc_del (utab, nperio=nperio, cd_type='U', psgn=psgn) |
---|
1450 | |
---|
1451 | if mmath == xr : |
---|
1452 | utab = utab.assign_coords({ay:np.arange(ftab.shape[iy])+1.}) |
---|
1453 | if zdim != None and iz != None and az != 'olevel' : |
---|
1454 | utab = utab.rename( {az:zdim}) |
---|
1455 | return utab |
---|
1456 | |
---|
1457 | #@numba.jit(forceobj=True) |
---|
1458 | def F2V (ftab, nperio=None, psgn=1.0, zdim='depthv', action='ave') : |
---|
1459 | '''Interpolate an array from F grid to V grid (i-mean)''' |
---|
1460 | mmath = __mmath__ (ftab) |
---|
1461 | ftab_0 = mmath.where ( np.isnan(ftab), 0., ftab) |
---|
1462 | ftab_0 = lbc_add (ftab_0 , nperio=nperio, cd_type='F', psgn=psgn) |
---|
1463 | ix, ax = __findAxis__ (ftab_0, 'x') |
---|
1464 | iz, az = __findAxis__ (ftab_0, 'z') |
---|
1465 | if action == 'ave' : vtab = 0.5 * (ftab_0 + np.roll (ftab_0, axis=ix, shift=-1)) |
---|
1466 | if action == 'min' : vtab = np.minimum (ftab_0 , np.roll (ftab_0, axis=ix, shift=-1)) |
---|
1467 | if action == 'max' : vtab = np.maximum (ftab_0 , np.roll (ftab_0, axis=ix, shift=-1)) |
---|
1468 | if action == 'mult' : vtab = ftab_0 * np.roll (ftab_0, axis=ix, shift=-1) |
---|
1469 | |
---|
1470 | vtab = lbc_del (vtab, nperio=nperio, cd_type='V', psgn=psgn) |
---|
1471 | if mmath == xr : |
---|
1472 | vtab = vtab.assign_coords({ax:np.arange(ftab.shape[ix])+1.}) |
---|
1473 | if zdim != None and iz != None and az != 'olevel' : |
---|
1474 | vtab = vtab.rename( {az:zdim}) |
---|
1475 | return vtab |
---|
1476 | |
---|
1477 | #@numba.jit(forceobj=True) |
---|
1478 | def W2T (wtab, zcoord=None, zdim='deptht', sval=np.nan) : |
---|
1479 | ''' |
---|
1480 | Interpolate an array on W grid to T grid (k-mean) |
---|
1481 | sval is the bottom value |
---|
1482 | ''' |
---|
1483 | mmath = __mmath__ (wtab) |
---|
1484 | wtab_0 = mmath.where ( np.isnan(wtab), 0., wtab) |
---|
1485 | |
---|
1486 | iz, az = __findAxis__ (wtab_0, 'z') |
---|
1487 | |
---|
1488 | ttab = 0.5 * ( wtab_0 + np.roll (wtab_0, axis=iz, shift=-1) ) |
---|
1489 | |
---|
1490 | if mmath == xr : |
---|
1491 | ttab[{az:iz}] = sval |
---|
1492 | if zdim != None and iz != None and az != 'olevel' : |
---|
1493 | ttab = ttab.rename ( {az:zdim} ) |
---|
1494 | try : ttab = ttab.assign_coords ( {zdim:zcoord} ) |
---|
1495 | except : pass |
---|
1496 | else : |
---|
1497 | ttab[..., -1, :, :] = sval |
---|
1498 | |
---|
1499 | return ttab |
---|
1500 | |
---|
1501 | #@numba.jit(forceobj=True) |
---|
1502 | def T2W (ttab, zcoord=None, zdim='depthw', sval=np.nan, extrap_surf=False) : |
---|
1503 | '''Interpolate an array from T grid to W grid (k-mean) |
---|
1504 | sval is the surface value |
---|
1505 | if extrap_surf==True, surface value is taken from 1st level value. |
---|
1506 | ''' |
---|
1507 | mmath = __mmath__ (ttab) |
---|
1508 | ttab_0 = mmath.where ( np.isnan(ttab), 0., ttab) |
---|
1509 | iz, az = __findAxis__ (ttab_0, 'z') |
---|
1510 | wtab = 0.5 * ( ttab_0 + np.roll (ttab_0, axis=iz, shift=1) ) |
---|
1511 | |
---|
1512 | if mmath == xr : |
---|
1513 | if extrap_surf : wtab[{az:0}] = ttabb[{az:0}] |
---|
1514 | else : wtab[{az:0}] = sval |
---|
1515 | else : |
---|
1516 | if extrap_surf : wtab[..., 0, :, :] = ttab[..., 0, :, :] |
---|
1517 | else : wtab[..., 0, :, :] = sval |
---|
1518 | |
---|
1519 | if mmath == xr : |
---|
1520 | if zdim != None and iz != None and az != 'olevel' : |
---|
1521 | wtab = wtab.rename ( {az:zdim}) |
---|
1522 | if zcoord != None : wtab = wtab.assign_coords ( {zdim:zcoord}) |
---|
1523 | else : ztab = wtab.assign_coords ( {zdim:np.arange(ttab.shape[iz])+1.} ) |
---|
1524 | return wtab |
---|
1525 | |
---|
1526 | #@numba.jit(forceobj=True) |
---|
1527 | def fill (ptab, nperio, cd_type='T', npass=1, sval=0.) : |
---|
1528 | ''' |
---|
1529 | Fill sval values with mean of neighbours |
---|
1530 | |
---|
1531 | Inputs : |
---|
1532 | ptab : input field to fill |
---|
1533 | nperio, cd_type : periodicity characteristics |
---|
1534 | ''' |
---|
1535 | |
---|
1536 | mmath = __mmath__ (ptab) |
---|
1537 | |
---|
1538 | DoPerio = False ; lperio = nperio |
---|
1539 | if nperio == 4.2 : |
---|
1540 | DoPerio = True ; lperio = 4 |
---|
1541 | if nperio == 6.2 : |
---|
1542 | DoPerio = True ; lperio = 6 |
---|
1543 | |
---|
1544 | if DoPerio : |
---|
1545 | ztab = lbc_add (ptab, nperio=nperio, sval=sval) |
---|
1546 | else : |
---|
1547 | ztab = ptab |
---|
1548 | |
---|
1549 | if np.isnan (sval) : |
---|
1550 | ztab = mmath.where (np.isnan(ztab), np.nan, ztab) |
---|
1551 | else : |
---|
1552 | ztab = mmath.where (ztab==sval , np.nan, ztab) |
---|
1553 | |
---|
1554 | for nn in np.arange (npass) : |
---|
1555 | zmask = mmath.where ( np.isnan(ztab), 0., 1. ) |
---|
1556 | ztab0 = mmath.where ( np.isnan(ztab), 0., ztab ) |
---|
1557 | # Compte du nombre de voisins |
---|
1558 | zcount = 1./6. * ( zmask \ |
---|
1559 | + np.roll(zmask, shift=1, axis=-1) + np.roll(zmask, shift=-1, axis=-1) \ |
---|
1560 | + np.roll(zmask, shift=1, axis=-2) + np.roll(zmask, shift=-1, axis=-2) \ |
---|
1561 | + 0.5 * ( \ |
---|
1562 | + np.roll(np.roll(zmask, shift= 1, axis=-2), shift= 1, axis=-1) \ |
---|
1563 | + np.roll(np.roll(zmask, shift=-1, axis=-2), shift= 1, axis=-1) \ |
---|
1564 | + np.roll(np.roll(zmask, shift= 1, axis=-2), shift=-1, axis=-1) \ |
---|
1565 | + np.roll(np.roll(zmask, shift=-1, axis=-2), shift=-1, axis=-1) ) ) |
---|
1566 | |
---|
1567 | znew =1./6. * ( ztab0 \ |
---|
1568 | + np.roll(ztab0, shift=1, axis=-1) + np.roll(ztab0, shift=-1, axis=-1) \ |
---|
1569 | + np.roll(ztab0, shift=1, axis=-2) + np.roll(ztab0, shift=-1, axis=-2) \ |
---|
1570 | + 0.5 * ( \ |
---|
1571 | + np.roll(np.roll(ztab0 , shift= 1, axis=-2), shift= 1, axis=-1) \ |
---|
1572 | + np.roll(np.roll(ztab0 , shift=-1, axis=-2), shift= 1, axis=-1) \ |
---|
1573 | + np.roll(np.roll(ztab0 , shift= 1, axis=-2), shift=-1, axis=-1) \ |
---|
1574 | + np.roll(np.roll(ztab0 , shift=-1, axis=-2), shift=-1, axis=-1) ) ) |
---|
1575 | |
---|
1576 | zcount = lbc (zcount, nperio=lperio, cd_type=cd_type) |
---|
1577 | znew = lbc (znew , nperio=lperio, cd_type=cd_type) |
---|
1578 | |
---|
1579 | ztab = mmath.where (np.logical_and (zmask==0., zcount>0), znew/zcount, ztab) |
---|
1580 | |
---|
1581 | ztab = mmath.where (zcount==0, sval, ztab) |
---|
1582 | if DoPerio : ztab = lbc_del (ztab, nperio=lperio) |
---|
1583 | |
---|
1584 | return ztab |
---|
1585 | |
---|
1586 | #@numba.jit(forceobj=True) |
---|
1587 | def correct_uv (u, v, lat) : |
---|
1588 | ''' |
---|
1589 | Correct a Cartopy bug in Orthographic projection |
---|
1590 | |
---|
1591 | See https://github.com/SciTools/cartopy/issues/1179 |
---|
1592 | |
---|
1593 | The correction is needed with cartopy <= 0.20 |
---|
1594 | It seems that version 0.21 will correct the bug (https://github.com/SciTools/cartopy/pull/1926) |
---|
1595 | |
---|
1596 | Inputs : |
---|
1597 | u, v : eastward/nothward components |
---|
1598 | lat : latitude of the point (degrees north) |
---|
1599 | |
---|
1600 | Outputs : |
---|
1601 | modified eastward/nothward components to have correct polar projections in cartopy |
---|
1602 | ''' |
---|
1603 | uv = np.sqrt (u*u + v*v) # Original modulus |
---|
1604 | zu = u |
---|
1605 | zv = v * np.cos (rad*lat) |
---|
1606 | zz = np.sqrt ( zu*zu + zv*zv ) # Corrected modulus |
---|
1607 | uc = zu*uv/zz ; vc = zv*uv/zz # Final corrected values |
---|
1608 | return uc, vc |
---|
1609 | |
---|
1610 | def msf (v_e1v_e3v, lat1d, depthw) : |
---|
1611 | ''' |
---|
1612 | Computes the meridonal stream function |
---|
1613 | First input is meridional_velocity*e1v*e3v |
---|
1614 | ''' |
---|
1615 | @numba.jit(forceobj=True) |
---|
1616 | def iin (tab, dim) : |
---|
1617 | ''' |
---|
1618 | Integrate from the bottom |
---|
1619 | ''' |
---|
1620 | result = tab * 0.0 |
---|
1621 | nlen = len(tab.coords[dim]) |
---|
1622 | for jn in np.arange (nlen-2, 0, -1) : |
---|
1623 | result [{dim:jn}] = result [{dim:jn+1}] - tab [{dim:jn}] |
---|
1624 | result = result.where (result !=0, np.nan) |
---|
1625 | return result |
---|
1626 | |
---|
1627 | zomsf = iin ((v_e1v_e3v).sum (dim='x', keep_attrs=True)*1E-6, dim='depthv') |
---|
1628 | zomsf = zomsf.assign_coords ( {'depthv':depthw.values, 'y':lat1d}) |
---|
1629 | zomsf = zomsf.rename ( {'depthv':'depthw', 'y':'lat'}) |
---|
1630 | zomsf.attrs['long_name'] = 'Meridional stream function' |
---|
1631 | |
---|
1632 | zomsf.attrs['units'] = 'Sv' |
---|
1633 | zomsf.depthw.attrs=depthw.attrs |
---|
1634 | zomsf.lat.attrs=lat1d.attrs |
---|
1635 | |
---|
1636 | return zomsf |
---|
1637 | |
---|
1638 | def bsf (u_e2u_e3u, mask, nperio=None, bsf0=None ) : |
---|
1639 | ''' |
---|
1640 | Computes the barotropic stream function |
---|
1641 | First input is zonal_velocity*e2u*e3u |
---|
1642 | bsf0 is the point with bsf=0 (ex: bsf0={'x':5, 'y':120} ) |
---|
1643 | ''' |
---|
1644 | @numba.jit(forceobj=True) |
---|
1645 | def iin (tab, dim) : |
---|
1646 | ''' |
---|
1647 | Integrate from the south |
---|
1648 | ''' |
---|
1649 | result = tab * 0.0 |
---|
1650 | nlen = len(tab.coords[dim]) |
---|
1651 | for jn in np.arange (3, nlen) : |
---|
1652 | result [{dim:jn}] = result [{dim:jn-1}] + tab [{dim:jn}] |
---|
1653 | return result |
---|
1654 | |
---|
1655 | bsf = iin ((u_e2u_e3u).sum(dim='depthu', keep_attrs=True)*1E-6, dim='y') |
---|
1656 | bsf.attrs = u_e2u_e3u.attrs |
---|
1657 | if bsf0 != None : |
---|
1658 | bsf = bsf - bsf.isel (bsf0) |
---|
1659 | |
---|
1660 | bsf = bsf.where (mask !=0, np.nan) |
---|
1661 | bsf.attrs['long_name'] = 'Barotropic stream function' |
---|
1662 | bsf.attrs['units'] = 'Sv' |
---|
1663 | bsf = lbc (bsf, nperio=nperio, cd_type='F') |
---|
1664 | |
---|
1665 | return bsf |
---|
1666 | |
---|
1667 | def namelist_read (ref=None, cfg=None, out='dict', flat=False, verbose=False) : |
---|
1668 | ''' |
---|
1669 | Read NEMO namelist(s) and return either a dictionnary or an xarray dataset |
---|
1670 | |
---|
1671 | ref : file with reference namelist, or a f90nml.namelist.Namelist object |
---|
1672 | cfg : file with config namelist, or a f90nml.namelist.Namelist object |
---|
1673 | At least one namelist neaded |
---|
1674 | |
---|
1675 | out: |
---|
1676 | 'dict' to return a dictonnary |
---|
1677 | 'xr' to return an xarray dataset |
---|
1678 | flat : only for dict output. Output a flat dictionnary with all values. |
---|
1679 | |
---|
1680 | ''' |
---|
1681 | |
---|
1682 | if ref != None : |
---|
1683 | if isinstance (ref, str) : nml_ref = f90nml.read (ref) |
---|
1684 | if isinstance (ref, f90nml.namelist.Namelist) : nml_ref = ref |
---|
1685 | |
---|
1686 | if cfg != None : |
---|
1687 | if isinstance (cfg, str) : nml_cfg = f90nml.read (cfg) |
---|
1688 | if isinstance (cfg, f90nml.namelist.Namelist) : nml_cfg = cfg |
---|
1689 | |
---|
1690 | if out == 'dict' : dict_namelist = {} |
---|
1691 | if out == 'xr' : xr_namelist = xr.Dataset () |
---|
1692 | |
---|
1693 | list_nml = [] ; list_comment = [] |
---|
1694 | |
---|
1695 | if ref != None : |
---|
1696 | list_nml.append (nml_ref) ; list_comment.append ('ref') |
---|
1697 | if cfg != None : |
---|
1698 | list_nml.append (nml_cfg) ; list_comment.append ('cfg') |
---|
1699 | |
---|
1700 | for nml, comment in zip (list_nml, list_comment) : |
---|
1701 | if verbose : print (comment) |
---|
1702 | if flat and out =='dict' : |
---|
1703 | for nam in nml.keys () : |
---|
1704 | if verbose : print (nam) |
---|
1705 | for value in nml[nam] : |
---|
1706 | if out == 'dict' : dict_namelist[value] = nml[nam][value] |
---|
1707 | if verbose : print (nam, ':', value, ':', nml[nam][value]) |
---|
1708 | else : |
---|
1709 | for nam in nml.keys () : |
---|
1710 | if verbose : print (nam) |
---|
1711 | if out == 'dict' : |
---|
1712 | if nam not in dict_namelist.keys () : dict_namelist[nam] = {} |
---|
1713 | for value in nml[nam] : |
---|
1714 | if out == 'dict' : dict_namelist[nam][value] = nml[nam][value] |
---|
1715 | if out == 'xr' : xr_namelist[value] = nml[nam][value] |
---|
1716 | if verbose : print (nam, ':', value, ':', nml[nam][value]) |
---|
1717 | |
---|
1718 | if out == 'dict' : return dict_namelist |
---|
1719 | if out == 'xr' : return xr_namelist |
---|
1720 | |
---|
1721 | |
---|
1722 | def fill_closed_seas (imask, nperio=None, cd_type='T') : |
---|
1723 | '''Fill closed seas with image processing library |
---|
1724 | imask : mask, 1 on ocean, 0 on land |
---|
1725 | ''' |
---|
1726 | from scipy import ndimage |
---|
1727 | |
---|
1728 | imask_filled = ndimage.binary_fill_holes ( lbc (imask, nperio=nperio, cd_type=cd_type)) |
---|
1729 | imask_filled = lbc ( imask_filled, nperio=nperio, cd_type=cd_type) |
---|
1730 | |
---|
1731 | return imask_filled |
---|
1732 | |
---|
1733 | ## =========================================================================== |
---|
1734 | ## |
---|
1735 | ## That's all folk's !!! |
---|
1736 | ## |
---|
1737 | ## =========================================================================== |
---|
1738 | |
---|
1739 | def __is_orca_north_fold__ ( Xtest, cname_long='T' ) : |
---|
1740 | ''' |
---|
1741 | Ported (pirated !!?) from Sosie |
---|
1742 | |
---|
1743 | Tell if there is a 2/point band overlaping folding at the north pole typical of the ORCA grid |
---|
1744 | |
---|
1745 | 0 => not an orca grid (or unknown one) |
---|
1746 | 4 => North fold T-point pivot (ex: ORCA2) |
---|
1747 | 6 => North fold F-point pivot (ex: ORCA1) |
---|
1748 | |
---|
1749 | We need all this 'cname_long' stuff because with our method, there is a |
---|
1750 | confusion between "Grid_U with T-fold" and "Grid_V with F-fold" |
---|
1751 | => so knowing the name of the longitude array (as in namelist, and hence as |
---|
1752 | in netcdf file) might help taking the righ decision !!! UGLY!!! |
---|
1753 | => not implemented yet |
---|
1754 | ''' |
---|
1755 | |
---|
1756 | ifld_nord = 0 ; cgrd_type = 'X' |
---|
1757 | ny, nx = Xtest.shape[-2:] |
---|
1758 | |
---|
1759 | if ny > 3 : # (case if called with a 1D array, ignoring...) |
---|
1760 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-3, nx-1:nx-nx//2+1:-1] ).sum() == 0. : |
---|
1761 | ifld_nord = 4 ; cgrd_type = 'T' # T-pivot, grid_T |
---|
1762 | |
---|
1763 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-3, nx-2:nx-nx//2 :-1] ).sum() == 0. : |
---|
1764 | if cnlon == 'U' : ifld_nord = 4 ; cgrd_type = 'U' # T-pivot, grid_T |
---|
1765 | ## LOLO: PROBLEM == 6, V !!! |
---|
1766 | |
---|
1767 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-3, nx-1:nx-nx//2+1:-1] ).sum() == 0. : |
---|
1768 | ifld_nord = 4 ; cgrd_type = 'V' # T-pivot, grid_V |
---|
1769 | |
---|
1770 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-2, nx-1-1:nx-nx//2:-1] ).sum() == 0. : |
---|
1771 | ifld_nord = 6 ; cgrd_type = 'T'# F-pivot, grid_T |
---|
1772 | |
---|
1773 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-1, nx-1:nx-nx//2-1:-1] ).sum() == 0. : |
---|
1774 | ifld_nord = 6 ; cgrd_type = 'U' # F-pivot, grid_U |
---|
1775 | |
---|
1776 | if ( Xtest [ny-1, 1:nx//2-1] - Xtest [ny-3, nx-2:nx-nx//2 :-1] ).sum() == 0. : |
---|
1777 | if cnlon == 'V' : ifld_nord = 6 ; cgrd_type = 'V' # F-pivot, grid_V |
---|
1778 | ## LOLO: PROBLEM == 4, U !!! |
---|
1779 | |
---|
1780 | return ifld_nord, cgrd_type |
---|