source: modipsl/trunk/util/ins_job @ 2394

#!/bin/ksh
# $Id$
#---------------------------------------------------------------------
#- Installation of jobs according to an environment
#---------------------------------------------------------------------
function ins_job_Usage
{
print - "
ins_job installs the jobs in the directories
which contain a file config.card

ins_job must be launched on the host
on which the job will be submitted

Usage :
  ${b_n} [-h] [-v] [-e] [-p project]

Options :
  -h          : help
  -v          : verbose mode
  -e          : turn on ensemble mode (hindcast/forecast or date restart)
  -p project  : add default project on curie
"
}
function ins_job_Warning
{
   [[ ${x_v} = 'verbose' ]] && print - "\n############### WARNING ###############";
   [[ ${x_v} = 'verbose' ]] && print - "File ${n_f} already exists\nin directory ${j}";
   [[ ${x_v} = 'verbose' ]] && print - "You must delete this file to update !";
}

function ins_job_Check_JobName
{
  verif=${JobName##[a-zA-Z]*(?([.\-])[a-zA-Z0-9])}

  if [ ${#verif} -ne 0 ] ; then
    echo "################ ERROR ################"
    echo "${JobName} is invalid."
    echo "- JobName can only contain alphanumeric characters, \".\" and \"-\""
    echo "- JobName must start with a letter"

    ((NbErr=NbErr+1))

    Status=1
  else
    Status=0
  fi

  return ${Status}
}

#-
#     dirname     and      basename
#-
d_n=$(dirname ${0}); b_n=$(basename ${0});
#-
# Retrieving and validation of the options
#-
x_v='silencious';
x_e=false;
x_p=false;
while getopts :hvep: V ; do
  case $V in
  (h)  ins_job_Usage; exit 0;;
  (v)  x_v='verbose';;
  (e)  x_e=true;;
  (p)  x_p=true
       ProjectID=${OPTARG} ;;
  (:)  echo ${b_n}" : -"${OPTARG}" option : missing value" 1>&2;
       exit 2;;
  (\?) echo ${b_n}" : -"${OPTARG}" option : not supported" 1>&2;
       exit 2;;
  esac
done
[ ${x_v} = 'silencious' ] && export DEBUG_sys=false
shift $(($OPTIND-1));
#-
# Define working files
#-
F_MOD=$(cd ${d_n}'/..';/bin/pwd;)
# [[ ${F_MOD##*/} != 'modipsl' ]] && \
#  { print - "directory 'modipsl' unreachable"; exit 3; }
W_W=${d_n}'/../libIGCM'
[[ ! -d ${W_W} ]] && { print - "${W_W} unreachable"; exit 3; }
libIGCM=$(cd ${W_W};/bin/pwd;)
F_JOB=${libIGCM}'/AA_job';
[[ ! -f ${F_JOB} ]] && { print - "${F_JOB} unreachable"; exit 3; }
F_RCI=${libIGCM}'/run.card.init';
[[ ! -f ${F_RCI} ]] && { print - "${F_RCI} unreachable"; exit 3; }
#-
# Host Name
#-
x_t=$(${d_n}/w_i_h) 2>/dev/null;
{ [[ ${?} != 0 ]] && \
   { print - "\nw_i_h or uname unreachable\n" 1>&2; exit 1; }; } || \
  [[ ${x_t} = "Unknown" ]] && \
   { print - "\nLocal_Host not supported\n" 1>&2; exit 1; };
#-
W_W=$(sed -n -e "s/^#-Q-  *\([^ ]*\).*$/\1/p" ${F_JOB} | \
       sort -u | sed -e "/${x_t}/!d");
[[ '\?'"${W_W}" != '\?'${x_t} ]] && \
  {
   print - "\nHost  "${x_t}"  not supported" 1>&2;
   print - "'default' will be used" 1>&2;
   x_t='default'
  }
#-
[[ ${x_v} = 'verbose' ]] && \
 {
  print - "";
  print - '--- Host        : '${x_t};
  print - '--- modipsl     : '${F_MOD};
  print - '--- libIGCM     : '${libIGCM};
  print - '--- basic job   : '${F_JOB};
  print - '--- basic card  : '${F_RCI};
 }
#-
[[ ${x_v} = 'verbose' ]] && print - "\nInstallation of jobs for '${x_t}'";
#-
# Accessing to functions (without stack)
#-
DEBUG_debug=false
MirrorlibIGCM=false
TaskType=computing
. ${libIGCM}/libIGCM_debug/libIGCM_debug.ksh
. ${libIGCM}/libIGCM_card/libIGCM_card.ksh
. ${libIGCM}/libIGCM_date/libIGCM_date.ksh
. ${libIGCM}/libIGCM_sys/libIGCM_sys.ksh
if [ $x_e = 'true' ] ; then
  . ${libIGCM}/libIGCM_ensemble/libIGCM_ensemble.ksh
fi

NbErr=0

#-
# Define Project ID to set up jobs header for Curie (TGCC)
#-
if ( ! ${x_p} ) ; then
  if [ X"${x_t}" == "Xcurie" ] ; then
    ProjectID=$( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | head -n 1 )
    ProjectID=${ProjectID:="gen2211"}
    answer=""
    print - "Hit Enter or give project ID (default is ${ProjectID}), possible projects are $( echo $( ccc_myproject | gawk '{ if ( $3 ~ /^project$/ && $4 !~ /^tgcc/ ) { print $4 } }' | sort -u ) ) :"
    read answer

    if [ "X${answer}" != "X" ] ; then
      ProjectID=${answer}
    fi
    [ "${ProjectID}" = "gencmip6" ] && ProjectNode="standard" || ProjectNode="xlarge"
  fi
else
  if [ X"${x_t}" != "Xcurie" ] ; then
    print - "\nOption -p invalid with this host (${x_t}): it will be ignored" 1>&2;
  fi
fi

#-
# Define the pattern string to substitute
#-
W_P='#-Q- '; W_W=${W_P}${x_t};
#-
# Extract list of 'config.card' files
# and create jobs with AA_job
#-
F_CFG='config.card';
F_CFG_ENS='ensemble.card';
SUBMIT_DIR_ENS=$( pwd )
for i in $(find ${d_n}/.. -name ${F_CFG} -print)
do
  j=$(cd ${i%/*};/bin/pwd;)
  n_f=${F_RCI##*/};

  if [ ! X$( echo ${j} | grep EXPERIMENTS ) = X ] ; then
    # Do not treat config.card if it is in sub-directory of EXPERIMENTS
    # Continue to next config.card
    continue
  else
    [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}";
  fi

  # Find out if new structure and set .resol filename
  if [ -d ${j}/EXPERIMENTS ] && [ -d ${j}/GENERAL ] ; then
    # New Structure
    [[ ${x_v} = 'verbose' ]] && echo "This is new configuration structure"
    new_struct=yes
    resolfile=$j/.resol
  else
    # Old Structure
    new_struct=no
    resolfile=$j/../.resol
  fi

  # Get all variables declared in section UserChoices in config.card
  IGCM_card_DefineArrayFromSection ${j}'/'${F_CFG} UserChoices
  # Set default values
  config_UserChoices_JobClass=mono
  config_UserChoices_JobNumProcTot=1
  config_UserChoices_ExpType=""
  RESOL_ATM_3D=this_is_a_test_string
  RESOL=this_is_another_test_string
  typeset option
  for option in ${config_UserChoices[*]} ; do
    IGCM_card_DefineVariableFromOption ${j}'/'${F_CFG} UserChoices ${option}
  done

  # Find the JobName : JobName might contain the variable RESOL_ATM_3D that will be replaced by what is in .resol file
  if [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL_ATM_3D} ) = X ] ; then
    TRUERESOL=$( tail -1 $resolfile | awk "-F=" '{print $2}' )
    echo TRUERESOL = $TRUERESOL
    JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL_ATM_3D}/${TRUERESOL}/" )
    IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName}
  elif [ ! X$( echo ${config_UserChoices_JobName} | grep ${RESOL} ) = X ] ; then
    TRUERESOL=$( head -1 $resolfile  )
    JobName=$( echo ${config_UserChoices_JobName} | sed -e "s/${RESOL}/${TRUERESOL}/" )
    IGCM_card_WriteOption ${j}'/'${F_CFG} UserChoices JobName ${JobName}
  else
    JobName=${config_UserChoices_JobName}
  fi

  # Check JobName validity : only alphanumerical characters, "-" and "." are authorized
  ins_job_Check_JobName
  RetCode=$?
  [[ $RetCode -gt 0 ]] && continue

  [[ ${x_v} = 'verbose' ]] && echo "JobName=${JobName}"

  # Add specific treatment for new type of directory structure
  if [ ${new_struct} == yes ] ; then

    if [ "X${config_UserChoices_ExpType}" = X ] ; then
      echo "\nERROR in ${j}/config.card"
      echo "ins_job stops here"
      echo "=> The variable ExpType must be added in config.card in section UserChoices"
      echo "=> ExpType gives the directory for the .card configurtaion files for the wanted experiement. For exemple ExpType=IPSLCM5/historical"
      exit 4
    else
      [[ ${x_v} = 'verbose' ]] && echo "ExpType= ${config_UserChoices_ExpType}"
    fi

    if [ -d ${j}/${JobName} ] ; then
      echo "Directory ${j}/${JobName} exist already, continue next config.card"
      continue
    fi
    echo "=> Submit directory ${JobName} will be created with cards from EXPERIMENTS/${config_UserChoices_ExpType}"
    cp -r ${j}/EXPERIMENTS/${config_UserChoices_ExpType} ${j}/${JobName}
    cp -r ${j}/GENERAL/* ${j}/${JobName}/.
    cp -f ${j}/${F_CFG}  ${j}/${JobName}/.
    if [ -f ${F_CFG_ENS} ] ; then
      cp -f ${j}/${F_CFG_ENS}  ${j}/${JobName}/.
      SUBMIT_DIR_ENS=${j}/${JobName}
    fi
    rm -f ${j}/${F_CFG}
    rm -f ${j}/${F_CFG_ENS}
    rm -f ${j}/${F_CFG}.bak
    j=${j}/${JobName}
    [[ ${x_v} = 'verbose' ]] && echo new j=$j
  fi
  # end specific treatment for new type directory structure

  [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; } || \
   {
    [[ ${x_v} = 'verbose' ]] && print - "\nCopying file ${F_RCI}\nin directory ${j}";
    \cp ${F_RCI} ${j};
   }

  # File name for Job
  n_f='Job_'${JobName};
  [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; }
  [[ ${x_v} = 'verbose' ]] && print - "\nWorking with file ${F_CFG}\nin directory ${j}\nfor ${n_f}";
  sed -e "/^${W_W} */ s///" \
      -e "/^${W_P}/d"       \
      -e "s%::modipsl::%${F_MOD}%" \
      -e "s/::Jobname::/${JobName}/" \
      -e "s/::JobClass::/${config_UserChoices_JobClass}/" \
      -e "s/::JobNumProcTot::/${config_UserChoices_JobNumProcTot}/" \
      -e "s/::default_project::/${ProjectID}/" \
      ${F_JOB} > ${j}'/'${n_f}
  chmod u+x ${j}'/'${n_f}
done
#-
# Extract list of AA_* files in libIGCM
# and create jobs (for all except AA_job)
#-
for i in $(find ${libIGCM} -maxdepth 1 -name "AA_*" -print)
do
  i_f=${i##*/};
  [[ ${i_f} = 'AA_job' ]] && { continue; }
  j=${i%/*}; n_f=${i_f#AA_}'.job';
  [[ -f ${j}'/'${n_f} ]] && { ins_job_Warning; continue; }
  [[ ${x_v} = 'verbose' ]] && print - "\nIn directory ${j}\n${i_f} -> ${n_f}"
  sed -e "/^${W_W} */ s///" \
      -e "s%::modipsl::%${F_MOD}%" \
      -e "/^${W_P}/d"       \
      -e "s/::default_node::/${ProjectNode}/" \
      -e "s/::default_project::/${ProjectID}/" \
      ${i} > ${j}'/'${n_f}
  chmod u+x ${j}'/'${n_f}
done
#-
# set default_project in libIGCM_sys_curie.ksh too.
#-
if [ X"${x_t}" == "Xcurie" ] ; then
  i=${libIGCM}/libIGCM_sys/libIGCM_sys_curie.ksh
  sed -i -e "s/::default_project::/${ProjectID}/" ${i}
fi
#-
# Limited to hindcast/forecast and date restart Ensemble for the time being
if [ ${x_e} = 'true' ] ; then
  #.. Read input data from ensemble.card ..
  SUBMIT_DIR=${SUBMIT_DIR_ENS}
  RUN_DIR="${WORKDIR}/ENSEMBLE"
  #
  # Copy initial things around and define variables (hindcast/forecast case)
  IGCM_sys_Cd ${SUBMIT_DIR}
  IGCM_ensemble_Init

  if [[ ${ensemble_Ens_PARAMETRIC_active} = 'y' ]] ; then
    echo "WARNING: Parametric Ensemble is not implemented yet..."
  fi

  if [[ ${ensemble_Ens_DATE_active} = 'y' ]] ; then
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_DateInit
    # As it says
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_DatePeriodicStarts
    # As it says
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_DateNonPeriodicStarts
    # Clean
    IGCM_sys_Rm -rf ${RUN_DIR}
  fi

  if [[ ${ensemble_Ens_PERTURB_active} = 'y' ]] ; then
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_CastInit
    # As it says
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_CastPeriodicStarts
    # As it says
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_CastNonPeriodicStarts
    # As it says
    IGCM_sys_Cd ${SUBMIT_DIR}
    IGCM_ensemble_CastMemberList
    # Done
    IGCM_sys_Cp ${RUN_DIR}/CreatedDir.txt ${SUBMIT_DIR}
    IGCM_sys_Cd ${SUBMIT_DIR}
    # Clean
    IGCM_sys_Rm -rf ${RUN_DIR}
  fi
fi
#-
[[ ${x_v} = 'verbose' ]] && print - "";
#-
# That's all folks
#-

if [ ${NbErr} -ne 0 ] ; then
  echo "################ ERROR ################"
  echo "${NbErr} invalid JobName(s) found, check the log"
fi


exit 0;