Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_amip/COMP/lmdz.card	(revision 2770)
@@ -33,11 +33,16 @@
 	(${R_IN}/ATM/Rugos.nc, .), \
 	(${R_IN}/ATM/landiceref.nc, .)
-### Please, add the o2a.nc file to fit with the coupled configuration associated
-### Note that this file is different for different versions of the coupled model
+
+### Optional: Add the o2a.nc file to fit with the coupled configuration for the 
+### land-sea mask. This file is different for different versions of the coupled model and
+### the different resolutions. Choose between following to fit with IPSLCM6 coupled model:
+#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc)
 #	(${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc)
 
+
 [ParametersFiles]
-List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \
 	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
 	(${SUBMIT_DIR}/PARAM/run.def, .), \
@@ -49,5 +54,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def)
+List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZ/CREATE_clim/COMP/lmdz.card	(revision 2770)
@@ -34,11 +34,16 @@
 	(${R_IN}/ATM/AMIP_2014/sst_bc_clim.nc, amipbc_sst_1x1.nc), \
 	(${R_IN}/ATM/AMIP_2014/sic_bc_clim.nc, amipbc_sic_1x1.nc)
-### Please, add the o2a.nc file to fit with the coupled configuration associated
-### Note that this file is different for different versions of the coupled model
+
+### Optional: Add the o2a.nc file to fit with the coupled configuration for the 
+### land-sea mask. This file is different for different versions of the coupled model and
+### the different resolutions. Choose between following to fit with IPSLCM6 coupled model:
+#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc)
 #	(${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc)
 
+
 [ParametersFiles]
-List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \
 	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
 	(${SUBMIT_DIR}/PARAM/run.def, .), \
@@ -50,5 +55,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def)
+List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/lmdz.card	(revision 2770)
@@ -1,4 +1,2 @@
-# $Id$
-
 [Compatibility]
 libIGCM=1.0
@@ -7,5 +5,6 @@
 # Physics package to use :
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
-# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv3.2 for an early version of the new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
 
@@ -82,6 +81,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -111,5 +111,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, vert.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/orchidee.card	(revision 2770)
@@ -10,9 +10,9 @@
 
 VEGET_UPDATE=1Y
-LAND_COVER_CHANGE=y
 
 [InitialStateFiles]
 List=	(${R_IN}/SRF/soils_param.nc,        . ), \
 	(${R_IN}/SRF/routing.nc,            . ), \
+	(${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \
         (${R_IN}/SRF/cartepente2d_15min.nc, .)
 
@@ -26,5 +26,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -38,6 +38,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/amip/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/lmdz.card	(revision 2770)
@@ -5,5 +5,6 @@
 # Physics package to use :
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
-# LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv3.2 for an early version of the new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
 
@@ -74,6 +75,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -103,5 +105,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, vert.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/orchidee.card	(revision 2770)
@@ -10,9 +10,9 @@
 
 VEGET_UPDATE=0Y
-LAND_COVER_CHANGE=n
 
 [InitialStateFiles]
 List=	(${R_IN}/SRF/soils_param.nc,        . ), \
 	(${R_IN}/SRF/routing.nc,            . ), \
+	(${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \
 	(${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_2000.nc, PFTmap.nc), \
         (${R_IN}/SRF/cartepente2d_15min.nc, .)
@@ -27,5 +27,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -39,6 +39,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZOR/clim/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/lmdz.card	(revision 2770)
@@ -7,7 +7,6 @@
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
-#LMDZ_Physics=NPv3.1
-#LMDZ_Physics=NPv3.2
 
 # Use XIOS as output library
@@ -66,9 +65,6 @@
 [InitialStateFiles]
 # start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
-List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start.nc	, start.nc	) \
-	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
-# start and starphy for nitrate version 
-#List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc	, start.nc	) \
-#	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc	, startphy.nc	)
+List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc	, start.nc	) \
+	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc	, startphy.nc	)
 
 
@@ -82,6 +78,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -110,5 +107,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/orchidee.card	(revision 2770)
@@ -10,5 +10,4 @@
 
 VEGET_UPDATE=0Y
-LAND_COVER_CHANGE=n
 
 [InitialStateFiles]
@@ -22,4 +21,10 @@
 ListNonDel= ()
 
+# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
+#ListNonDel= (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_fertilizer_1995.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_bbg_clim.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nfert.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nmanure.nc, .)
+
 [SmoothFiles]
 List= ()
@@ -27,5 +32,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -39,6 +44,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/AER/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/CREATE_erai/COMP/lmdz.card	(revision 2770)
@@ -33,11 +33,15 @@
 	(${R_IN}/ATM/Rugos.nc, .), \
 	(${R_IN}/ATM/landiceref.nc, .)
-### Please, add the o2a.nc file to fit with the coupled configuration associated
-### Note that this file is different for different versions of the coupled model
+
+### Optional: Add the o2a.nc file to fit with the coupled configuration for the 
+### land-sea mask. This file is different for different versions of the coupled model and
+### the different resolutions. Choose between following to fit with IPSLCM6 coupled model:
+#       (${R_IN}/ATM/IPSLCM6/eORCA1.1xLMD144142/o2a.nc, o2a.nc)
 #	(${R_IN}/ATM/IPSLCM6/ORCA2.3x9695_v1/o2a.nc, o2a.nc)
 
 [ParametersFiles]
-List=	(${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),    \
+List=	(${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def), \
+	(${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),    \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),   \
 	(${SUBMIT_DIR}/PARAM/config.def_actuel     ,  config.def),    \
 	(${SUBMIT_DIR}/PARAM/run.def, .), \
@@ -48,5 +52,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, config.def, traceur.def, guide.def)
+List=   (physiq.def, gcm.def, vert.def, run.def, config.def, traceur.def, guide.def)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/lmdz.card	(revision 2770)
@@ -7,7 +7,6 @@
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
-#LMDZ_Physics=NPv3.1
-#LMDZ_Physics=NPv3.2
 
 # Use XIOS as output library
@@ -66,6 +65,6 @@
 [InitialStateFiles]
 # start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
-List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start.nc	, start.nc	) \
-	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
+List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc	, start.nc	) \
+	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc	, startphy.nc	)
 
 
@@ -79,6 +78,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -107,5 +107,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/orchidee.card	(revision 2770)
@@ -10,5 +10,4 @@
 
 VEGET_UPDATE=0Y
-LAND_COVER_CHANGE=n
 
 [InitialStateFiles]
@@ -33,5 +32,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -45,6 +44,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/DUSS/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/lmdz.card	(revision 2770)
@@ -7,7 +7,6 @@
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
-#LMDZ_Physics=NPv3.1
-#LMDZ_Physics=NPv3.2
 
 # Use XIOS as output library
@@ -24,5 +23,5 @@
 
 # Number of periods where to set parameter adjust=y before switching to adjust=n
-# For adjust=n, set LMDZ_NbPeriod_ajust=0. 
+# For adjust=n, set LMDZ_NbPeriod_ajust=0.
 LMDZ_NbPeriod_adjust=0
 # LMDZ_NbPeriod_adjust=0
@@ -66,6 +65,6 @@
 [InitialStateFiles]
 # start and startphy are the clim files computed with CLIM_CREATE (create_etat0_limit) job
-List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start.nc	, start.nc	) \
-	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy.nc	, startphy.nc	)
+List= 	(${R_IN}/CHM/INCA${RESOL_CHM}/start_nitrate.nc	, start.nc	) \
+	(${R_IN}/CHM/INCA${RESOL_CHM}/startphy_nitrate.nc	, startphy.nc	)
 
 
@@ -79,6 +78,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -107,5 +107,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/orchidee.card	(revision 2770)
@@ -10,5 +10,4 @@
 
 VEGET_UPDATE=0Y
-LAND_COVER_CHANGE=n
 
 [InitialStateFiles]
@@ -22,4 +21,10 @@
 ListNonDel= ()
 
+# to decomment if we want to calcul bvoc - for this we need to activate CHEMISTRY_BVOC in orchidee.def_Choi
+#ListNonDel= (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_fertilizer_1995.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/orchidee_bbg_clim.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nfert.nc, .), \
+#            (/ccc/store/cont003/dsm/p24palm/ORCHIDEE_FORCING/Nmanure.nc, .)
+
 [SmoothFiles]
 List= ()
@@ -27,5 +32,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -39,6 +44,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/GES/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/lmdz.card	(revision 2770)
@@ -7,7 +7,6 @@
 # LMDZ_Physics=AP for standard/old physics(defalut), can be used with LMDZ4_AR5 or LMDZ5/trunk sources
 # LMDZ_Physics=NPv3.2 for new physics, to be used with LMDZ5/trunk revision 1554 or later
+# LMDZ_Physics=NPv5.4 for new physics to be used with LMDZ5/trunk revision 2449 or later
 LMDZ_Physics=AP
-#LMDZ_Physics=NPv3.1
-#LMDZ_Physics=NPv3.2
 
 # Use XIOS as output library
@@ -79,6 +78,7 @@
 
 [ParametersFiles]
-List=   (${SUBMIT_DIR}/PARAM/physiq.def_L${RESOL_ATM_Z}_${LMDZ_Physics}, physiq.def), \
-        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_3D},    gcm.def),          \
+List=   (${SUBMIT_DIR}/PARAM/physiq.def_${LMDZ_Physics}, physiq.def),       \
+        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \
+        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \
         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \
         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \
@@ -107,5 +107,5 @@
 
 [OutputText]
-List=   (physiq.def, gcm.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
+List=   (physiq.def, gcm.def, vert.def, run.def, traceur.def, guide.def, config.def, used_run.def, iodef.xml, context_lmdz.xml, field_def_lmdz.xml, file_def_*lmdz.xml, debug.01, lmdz.prt)
 
 [OutputFiles]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/orchidee.card	(revision 2770)
@@ -10,5 +10,4 @@
 
 VEGET_UPDATE=0Y
-LAND_COVER_CHANGE=n
 
 [InitialStateFiles]
@@ -33,5 +32,5 @@
 [ParametersFiles]
 List=	(${SUBMIT_DIR}/PARAM/orchidee.def_${DefSuffix}, orchidee.def)   ,\
-	(${SUBMIT_DIR}/PARAM/file_def_orchidee.xml, .)                  ,\
+	(${MODIPSL}/modeles/ORCHIDEE/src_xml/file_def_orchidee.xml, .)  ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/context_orchidee.xml, .)   ,\
 	(${MODIPSL}/modeles/ORCHIDEE/src_xml/field_def_orchidee.xml, .)
@@ -45,6 +44,5 @@
 [OutputFiles]
 List=   (sechiba_history.nc,   ${R_OUT_SRF_O_M}/${PREFIX}_1M_sechiba_history.nc, Post_1M_sechiba_history), \
-        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE),                    \
-        (orchidee_watchout.nc, ${R_OUT_SRF_O_M}/${PREFIX}_1M_watchout.nc,        NONE)
+        (sechiba_out_2.nc,     ${R_OUT_SRF_O_H}/${PREFIX}_HF_sechiba_out_2.nc,   NONE)
 
 [Post_1M_sechiba_history]
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/EXPERIMENTS/LMDZORINCA/NMHC_AER/COMP/stomate.card	(revision 2770)
@@ -29,5 +29,5 @@
 [Post_1M_stomate_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas)
 TimeSeriesVars2D= (T2M_MONTH,CONTFRAC,RESOLUTION_X,RESOLUTION_Y,CONVFLUX,CFLUX_PROD10,CFLUX_PROD100,HARVEST_ABOVE)
 ChunckJob2D = NONE
@@ -38,5 +38,5 @@
 [Post_1M_stomate_ipcc_history]
 Patches= ()
-GatherWithInternal= (lon, lat, PFT, time_counter, time_counter_bounds, Areas, CONTFRAC)
+GatherWithInternal= (lon, lat, time_counter, time_counter_bounds, Areas, CONTFRAC)
 TimeSeriesVars2D=(cVeg, cLitter, cSoil, cProduct, lai, gpp, ra, npp, rh, fFire, fHarvest, fLuc, nbp, fVegLitter, fLitterSoil, cLeaf, cWood, cRoot, cMisc, cLitterAbove, cLitterBelow, cSoilFast, cSoilMedium, cSoilSlow, landCoverFrac, treeFracPrimDec, treeFracPrimEver, c3PftFrac, c4PftFrac, rGrowth, rMaint, nppLeaf, nppWood, nppRoot, nep)
 ChunckJob2D = NONE
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/lmdz.driver
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/lmdz.driver	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/lmdz.driver	(revision 2770)
@@ -311,11 +311,6 @@
     fi
     	
-#       IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
-#	IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h output_freq 3h
-#	IGCM_comp_modifyXmlFile force file_def_histhf3h_lmdz.xml histhf3h name histhf3h
-
-#       IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
-#	IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm output_freq 3h
-#	IGCM_comp_modifyXmlFile force file_def_histhf3hm_lmdz.xml histhf3hm name histhf3hm
+    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3h_lmdz.xml histhf3h enabled ${ok_hf3h}
+    IGCM_comp_modifyXmlFile nonblocker file_def_histhf3hm_lmdz.xml histhf3hm enabled ${ok_hf3hm}
 
     IGCM_comp_modifyXmlFile nonblocker file_def_histstn_lmdz.xml histstn enabled ${ok_stn}
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/orchidee.driver
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/orchidee.driver	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/DRIVER/orchidee.driver	(revision 2770)
@@ -44,14 +44,9 @@
     fi
 
-    # Modify in orchidee.def VEGET_UPDATE and LAND_COVER_CHANGE if they are set in orchidee.card section UserChoices
+    # Modify in orchidee.def VEGET_UPDATE if it is set in orchidee.card section UserChoices
     if [ ! X${orchidee_UserChoices_VEGET_UPDATE} = X ] ; then
         IGCM_comp_modifyDefFile nonblocker orchidee.def VEGET_UPDATE   ${orchidee_UserChoices_VEGET_UPDATE}
     else
         IGCM_comp_modifyDefFile nonblocker orchidee.def VEGET_UPDATE 0Y
-    fi
-    if [ ! X${orchidee_UserChoices_LAND_COVER_CHANGE} = X ] ; then
-        IGCM_comp_modifyDefFile nonblocker orchidee.def LAND_COVER_CHANGE ${orchidee_UserChoices_LAND_COVER_CHANGE}
-    else
-        IGCM_comp_modifyDefFile nonblocker orchidee.def LAND_COVER_CHANGE n
     fi
 
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histdayCOSP_lmdz.xml
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histdayCOSP_lmdz.xml	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histdayCOSP_lmdz.xml	(revision 2770)
@@ -1,39 +1,53 @@
-<!-- This file corresponds to the LMDZ5 testing rev 2314. It might not be compatible  -->
+<!-- This file corresponds to the LMDZ5 trunk rev 2448. It might not be compatible    -->
 <!-- with older or newer revisions of LMDZ source code.                               -->
 
 <file_definition>
      <file_group id="defile">
-        <file id="histdayCOSP" name="histdayCOSP" output_freq="1d" output_level="5"  enabled="_AUTO_">
+        <file id="histdayCOSP" name="histdayCOSP" output_freq="1d" output_level="1"  enabled="_AUTO_">
 
-            <!-- VARS 2D -->
-            <field_group operation="average" freq_op="3h">
+            <!-- VARS Calipso and PARASOL -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
                 <field field_ref="cllcalipso"         level="1" />
                 <field field_ref="clmcalipso"         level="1" />
                 <field field_ref="clhcalipso"         level="1" />
                 <field field_ref="cltcalipso"         level="1" />
-                <field field_ref="clcalipso"  level="1" axis_ref="presnivs" />
+                <field field_ref="cllcalipsoice"         level="1" />
+                <field field_ref="clmcalipsoice"         level="1" />
+                <field field_ref="clhcalipsoice"         level="1" />
+                <field field_ref="cltcalipsoice"         level="1" />
+                <field field_ref="cllcalipsoliq"         level="1" />
+                <field field_ref="clmcalipsoliq"         level="1" />
+                <field field_ref="clhcalipsoliq"         level="1" />
+                <field field_ref="cltcalipsoliq"         level="1" />
+                <field field_ref="cllcalipsoun"         level="1" />
+                <field field_ref="clmcalipsoun"         level="1" />
+                <field field_ref="clhcalipsoun"         level="1" />
+                <field field_ref="cltcalipsoun"         level="1" />
+                <field field_ref="clcalipso"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoun"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmp"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpun"  level="1" axis_ref="height" />
                 <field field_ref="parasol_refl"  level="1" axis_ref="sza" />
                 <field field_ref="parasol_crefl"  level="1" axis_ref="sza" />
                 <field field_ref="Ncrefl"  level="1" axis_ref="sza" />
-		<field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c16_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c17_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c18_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c19_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c20_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
+       		    <field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="height" />
                 <field field_ref="c01_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="c02_atb532" level="10" axis_ref="height_mlev" />
@@ -57,4 +71,47 @@
                 <field field_ref="c20_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="beta_mol532" level="10" axis_ref="height_mlev" />
+              </field_group>
+             <!-- VARS CLOUDSAT et/ou Calipso -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true."> 
+               <field field_ref="cltlidarradar"  level="1"/>
+               <field field_ref="clcalipso2"  level="1" axis_ref="height" />
+               <field field_ref="c01_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c02_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c03_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c04_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c05_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c06_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c07_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c08_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c09_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c10_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c11_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c12_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c13_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c14_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c15_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c01_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c02_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c03_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c04_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c05_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c06_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c07_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c08_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c09_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c10_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c11_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c12_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c13_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c14_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c15_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c16_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c17_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c18_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c19_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c20_dbze94" level="10" axis_ref="height_mlev" />
+              </field_group>
+             <!-- VARS ISCCP -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
                 <field field_ref="sunlit" level="1" />
                 <field field_ref="c01_clisccp2" level="1" axis_ref="pressure2" />
@@ -68,9 +125,19 @@
                 <field field_ref="boxptopisccp" level="10" axis_ref="column" />
                 <field field_ref="tclisccp" level="1" />
-                <field field_ref="ctpisccp" level="10" />
-                <field field_ref="tauisccp" level="10" /> 
-                <field field_ref="albisccp" level="10" />
+                <field field_ref="ctpisccp" level="1" />
+                <field field_ref="tauisccp" level="1" /> 
+                <field field_ref="albisccp" level="1" />
                 <field field_ref="meantbisccp" level="10" />
                 <field field_ref="meantbclrisccp" level="10" />
+             </field_group>
+             <!-- VARS MISR -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
+                <field field_ref="c01_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c02_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c03_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c04_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c05_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c06_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c07_clMISR" level="1" axis_ref="cth16" />
             </field_group>
 
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histhfCOSP_lmdz.xml
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histhfCOSP_lmdz.xml	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histhfCOSP_lmdz.xml	(revision 2770)
@@ -1,39 +1,53 @@
-<!-- This file corresponds to the LMDZ5 testing rev 2314. It might not be compatible  -->
+<!-- This file corresponds to the LMDZ5 trunk rev 2448. It might not be compatible    -->
 <!-- with older or newer revisions of LMDZ source code.                               -->
 
 <file_definition>
      <file_group id="defile">
-        <file id="histhfCOSP" name="histhfCOSP" output_freq="6h" output_level="5"  enabled="_AUTO_">
+        <file id="histhfCOSP" name="histhfCOSP" output_freq="3h" output_level="1"  enabled="_AUTO_">
 
-            <!-- VARS 2D -->
-            <field_group operation="instant" freq_op="3h">
+            <!-- VARS Calipso and PARASOL -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
                 <field field_ref="cllcalipso"         level="1" />
                 <field field_ref="clmcalipso"         level="1" />
                 <field field_ref="clhcalipso"         level="1" />
                 <field field_ref="cltcalipso"         level="1" />
-                <field field_ref="clcalipso"  level="1" axis_ref="presnivs" />
+                <field field_ref="cllcalipsoice"         level="1" />
+                <field field_ref="clmcalipsoice"         level="1" />
+                <field field_ref="clhcalipsoice"         level="1" />
+                <field field_ref="cltcalipsoice"         level="1" />
+                <field field_ref="cllcalipsoliq"         level="1" />
+                <field field_ref="clmcalipsoliq"         level="1" />
+                <field field_ref="clhcalipsoliq"         level="1" />
+                <field field_ref="cltcalipsoliq"         level="1" />
+                <field field_ref="cllcalipsoun"         level="1" />
+                <field field_ref="clmcalipsoun"         level="1" />
+                <field field_ref="clhcalipsoun"         level="1" />
+                <field field_ref="cltcalipsoun"         level="1" />
+                <field field_ref="clcalipso"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoun"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmp"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpun"  level="1" axis_ref="height" />
                 <field field_ref="parasol_refl"  level="1" axis_ref="sza" />
                 <field field_ref="parasol_crefl"  level="1" axis_ref="sza" />
                 <field field_ref="Ncrefl"  level="1" axis_ref="sza" />
-		<field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c16_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c17_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c18_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c19_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c20_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
+       		    <field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="height" />
                 <field field_ref="c01_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="c02_atb532" level="10" axis_ref="height_mlev" />
@@ -57,4 +71,47 @@
                 <field field_ref="c20_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="beta_mol532" level="10" axis_ref="height_mlev" />
+              </field_group>
+             <!-- VARS CLOUDSAT et/ou Calipso -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true."> 
+               <field field_ref="cltlidarradar"  level="1"/>
+               <field field_ref="clcalipso2"  level="1" axis_ref="height" />
+               <field field_ref="c01_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c02_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c03_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c04_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c05_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c06_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c07_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c08_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c09_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c10_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c11_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c12_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c13_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c14_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c15_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c01_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c02_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c03_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c04_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c05_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c06_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c07_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c08_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c09_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c10_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c11_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c12_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c13_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c14_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c15_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c16_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c17_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c18_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c19_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c20_dbze94" level="10" axis_ref="height_mlev" />
+              </field_group>
+             <!-- VARS ISCCP -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
                 <field field_ref="sunlit" level="1" />
                 <field field_ref="c01_clisccp2" level="1" axis_ref="pressure2" />
@@ -68,9 +125,19 @@
                 <field field_ref="boxptopisccp" level="10" axis_ref="column" />
                 <field field_ref="tclisccp" level="1" />
-                <field field_ref="ctpisccp" level="10" />
-                <field field_ref="tauisccp" level="10" /> 
-                <field field_ref="albisccp" level="10" />
+                <field field_ref="ctpisccp" level="1" />
+                <field field_ref="tauisccp" level="1" /> 
+                <field field_ref="albisccp" level="1" />
                 <field field_ref="meantbisccp" level="10" />
                 <field field_ref="meantbclrisccp" level="10" />
+             </field_group>
+             <!-- VARS MISR -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
+                <field field_ref="c01_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c02_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c03_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c04_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c05_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c06_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c07_clMISR" level="1" axis_ref="cth16" />
             </field_group>
 
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histmthCOSP_lmdz.xml
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histmthCOSP_lmdz.xml	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_histmthCOSP_lmdz.xml	(revision 2770)
@@ -1,39 +1,53 @@
-<!-- This file corresponds to the LMDZ5 testing rev 2314. It might not be compatible  -->
+<!-- This file corresponds to the LMDZ5 trunk rev 2448. It might not be compatible    -->
 <!-- with older or newer revisions of LMDZ source code.                               -->
 
 <file_definition>
      <file_group id="defile">
-        <file id="histmthCOSP" name="histmthCOSP" output_freq="1mo" output_level="5"  enabled="_AUTO_">
+        <file id="histmthCOSP" name="histmthCOSP" output_freq="30d" output_level="1"  enabled="_AUTO_">
 
-            <!-- VARS 2D -->
-            <field_group operation="average" freq_op="3h">
+            <!-- VARS Calipso and PARASOL -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
                 <field field_ref="cllcalipso"         level="1" />
                 <field field_ref="clmcalipso"         level="1" />
                 <field field_ref="clhcalipso"         level="1" />
                 <field field_ref="cltcalipso"         level="1" />
-                <field field_ref="clcalipso"  level="1" axis_ref="presnivs" />
+                <field field_ref="cllcalipsoice"         level="1" />
+                <field field_ref="clmcalipsoice"         level="1" />
+                <field field_ref="clhcalipsoice"         level="1" />
+                <field field_ref="cltcalipsoice"         level="1" />
+                <field field_ref="cllcalipsoliq"         level="1" />
+                <field field_ref="clmcalipsoliq"         level="1" />
+                <field field_ref="clhcalipsoliq"         level="1" />
+                <field field_ref="cltcalipsoliq"         level="1" />
+                <field field_ref="cllcalipsoun"         level="1" />
+                <field field_ref="clmcalipsoun"         level="1" />
+                <field field_ref="clhcalipsoun"         level="1" />
+                <field field_ref="cltcalipsoun"         level="1" />
+                <field field_ref="clcalipso"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsoun"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmp"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpice"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpliq"  level="1" axis_ref="height" />
+                <field field_ref="clcalipsotmpun"  level="1" axis_ref="height" />
                 <field field_ref="parasol_refl"  level="1" axis_ref="sza" />
                 <field field_ref="parasol_crefl"  level="1" axis_ref="sza" />
                 <field field_ref="Ncrefl"  level="1" axis_ref="sza" />
-		<field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c16_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c17_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c18_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c19_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
-		<field field_ref="c20_cfad_lidarsr532"  level="10" axis_ref="presnivs" />
+       		    <field field_ref="c01_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c02_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c03_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c04_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c05_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c06_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c07_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c08_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c09_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c10_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c11_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c12_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c13_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c14_cfad_lidarsr532"  level="10" axis_ref="height" />
+		        <field field_ref="c15_cfad_lidarsr532"  level="10" axis_ref="height" />
                 <field field_ref="c01_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="c02_atb532" level="10" axis_ref="height_mlev" />
@@ -57,20 +71,73 @@
                 <field field_ref="c20_atb532" level="10" axis_ref="height_mlev" />
                 <field field_ref="beta_mol532" level="10" axis_ref="height_mlev" />
-                <field field_ref="sunlit" level="10" />
-                <field field_ref="c01_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c02_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c03_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c04_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c05_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c06_clisccp2" level="10" axis_ref="pressure2" />
-                <field field_ref="c07_clisccp2" level="10" axis_ref="pressure2" />
+              </field_group>
+             <!-- VARS CLOUDSAT et/ou Calipso -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true."> 
+               <field field_ref="cltlidarradar"  level="1"/>
+               <field field_ref="clcalipso2"  level="1" axis_ref="height" />
+               <field field_ref="c01_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c02_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c03_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c04_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c05_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c06_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c07_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c08_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c09_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c10_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c11_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c12_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c13_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c14_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c15_cfadDbze94"  level="10" axis_ref="height" />
+               <field field_ref="c01_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c02_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c03_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c04_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c05_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c06_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c07_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c08_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c09_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c10_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c11_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c12_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c13_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c14_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c15_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c16_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c17_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c18_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c19_dbze94" level="10" axis_ref="height_mlev" />
+               <field field_ref="c20_dbze94" level="10" axis_ref="height_mlev" />
+              </field_group>
+             <!-- VARS ISCCP -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
+                <field field_ref="sunlit" level="1" />
+                <field field_ref="c01_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c02_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c03_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c04_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c05_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c06_clisccp2" level="1" axis_ref="pressure2" />
+                <field field_ref="c07_clisccp2" level="1" axis_ref="pressure2" />
                 <field field_ref="boxtauisccp" level="10" axis_ref="column" />
                 <field field_ref="boxptopisccp" level="10" axis_ref="column" />
-                <field field_ref="tclisccp" level="10" />
-                <field field_ref="ctpisccp" level="10" />
-                <field field_ref="tauisccp" level="10" /> 
-                <field field_ref="albisccp" level="10" />
+                <field field_ref="tclisccp" level="1" />
+                <field field_ref="ctpisccp" level="1" />
+                <field field_ref="tauisccp" level="1" /> 
+                <field field_ref="albisccp" level="1" />
                 <field field_ref="meantbisccp" level="10" />
                 <field field_ref="meantbclrisccp" level="10" />
+             </field_group>
+             <!-- VARS MISR -->
+            <field_group operation="average" freq_op="3h" detect_missing_value=".true.">
+                <field field_ref="c01_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c02_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c03_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c04_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c05_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c06_clMISR" level="1" axis_ref="cth16" />
+                <field field_ref="c07_clMISR" level="1" axis_ref="cth16" />
             </field_group>
 
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_orchidee.xml
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/file_def_orchidee.xml	(revision 2769)
+++ 	(revision )
@@ -1,634 +1,0 @@
-<!-- =========================================================================================================== -->
-<!-- file_def_orchidee.xml : Definition of output files                                                          -->
-
-<!-- Definition of variables or groups included in the different files                                           -->
-<!-- Change this file by adding the files and/or variables you want to produce                                   -->
-<!-- Only variables and groups existing in field_def_orchidee.xml can be used                                    -->
-<!-- This file corresponds to revision 2724 in the trunk ORCHIDEE/src_xml directory. It might not be compatible  -->
-<!-- with older or newer revisions of ORCHIDEE source code.                                                      -->
-<!-- =========================================================================================================== -->
-
-<file_definition type="one_file" par_access="collective" enabled=".TRUE." min_digits="4">
-
-  <!-- Definition of files with sechiba diagnostics -->
-
-  <!-- Sechiba file 1 -->
-  <file id="sechiba1" name="sechiba_history" output_level="11" output_freq="_AUTO_" enabled="_AUTO_">
-    <!-- level 1 -->
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="LandPoints" level="1"/>
-    <field field_ref="Contfrac" level="1"/>
-    <field field_ref="evap" level="1"/>
-    <field field_ref="coastalflow" level="1"/>
-    <field field_ref="riverflow" level="1"/>
-    <field field_ref="temp_sol_C" level="1"/>
-    <field field_ref="rain" level="1"/>
-    <field field_ref="snowf" level="1"/>
-    <field field_ref="netrad" level="1"/>
-    <field field_ref="lai" level="1"/>
-    <field field_ref="reinf_slope" level="1"/>
-    <field field_ref="soilindex" level="1"/>
-    <field field_ref="basinmap" level="1"/>
-    <field field_ref="nbrivers" level="1"/>
-    <field field_ref="npp" level="1"/>
-    <!-- level 2 -->
-    <field field_ref="subli" level="2"/>
-    <field field_ref="runoff" level="2"/>
-    <field field_ref="drainage" level="2"/>
-    <field field_ref="riversret" level="2"/>
-    <field field_ref="hydrographs" level="2"/>
-    <field field_ref="evapnu" level="2"/>
-    <field field_ref="evapnu_soil" level="2"/>
-    <field field_ref="drainage_soil" level="2"/>
-    <field field_ref="transpir_soil" level="2"/>
-    <field field_ref="runoff_soil" level="2"/>
-    <field field_ref="tair" level="2"/>
-    <field field_ref="qair" level="2"/>
-    <field field_ref="q2m" level="2"/>
-    <field field_ref="t2m" level="2"/>
-    <field field_ref="alb_vis" level="2"/>
-    <field field_ref="alb_nir" level="2"/>
-    <field field_ref="soilalb_vis" level="2"/>
-    <field field_ref="soilalb_nir" level="2"/>
-    <field field_ref="vegalb_vis" level="2"/>
-    <field field_ref="vegalb_nir" level="2"/>
-    <field field_ref="z0" level="2"/>
-    <field field_ref="roughheight" level="2"/>
-    <field field_ref="transpir" level="2"/>
-    <field field_ref="inter" level="2"/>
-    <!-- level 3 -->
-    <field field_ref="tsol_max" level="3"/>
-    <field field_ref="tsol_min" level="3"/>
-    <field field_ref="fluxsens" level="3"/>
-    <field field_ref="fluxlat" level="3"/>
-    <field field_ref="snow" level="3"/>
-    <field field_ref="snowage" level="3"/>
-    <field field_ref="snownobio" level="3"/>
-    <field field_ref="snownobioage" level="3"/>
-    <field field_ref="vegetfrac" level="3"/>
-    <field field_ref="maxvegetfrac" level="3"/>
-    <field field_ref="tot_bare_soil" level="3"/>
-    <field field_ref="nobiofrac" level="3"/>
-    <field field_ref="flood_frac" level="3"/>
-    <field field_ref="reinfiltration" level="3"/>
-    <field field_ref="frac_bare" level="3"/>
-    <field field_ref="soiltile" level="3"/>
-    <field field_ref="moistc_1" level="3"/>
-    <field field_ref="moistc_2" level="3"/>
-    <field field_ref="moistc_3" level="3"/>
-    <field field_ref="kfactroot_1" level="3"/>
-    <field field_ref="kfactroot_2" level="3"/>
-    <field field_ref="kfactroot_3" level="3"/>
-    <field field_ref="vegetsoil_1" level="3"/>
-    <field field_ref="vegetsoil_2" level="3"/>
-    <field field_ref="vegetsoil_3" level="3"/>
-    <field field_ref="humtot_pro" level="3"/>
-    <!-- level 4 -->
-    <field field_ref="dss" level="4"/>
-    <field field_ref="gqsb" level="4"/>
-    <field field_ref="bqsb" level="4"/>
-    <field field_ref="humtot" level="4"/>
-    <field field_ref="humtot_soil" level="4"/>
-    <field field_ref="SWI" level="4"/>
-    <field field_ref="njsc" level="4"/>
-    <field field_ref="qsintveg" level="4"/>
-    <field field_ref="rstruct" level="4"/>
-    <field field_ref="gpp" level="4"/>
-    <field field_ref="nee" level="4"/>
-    <field field_ref="maint_resp" level="4"/>
-    <field field_ref="hetero_resp" level="4"/>
-    <field field_ref="growth_resp" level="4"/>
-    <field field_ref="precisol" level="4"/>
-    <field field_ref="drysoil_frac" level="4"/>
-    <field field_ref="evapot" level="4"/>
-    <field field_ref="evapot_corr" level="4"/>
-    <!-- level 5 -->
-    <field field_ref="swnet" level="5"/>
-    <field field_ref="swdown" level="5"/>
-    <field field_ref="lwdown" level="5"/>
-    <field field_ref="lwnet" level="5"/>
-    <!-- level 6 -->
-    <field field_ref="twbr" level="6"/>
-    <field field_ref="ptn" level="6"/>
-    <!-- level 7 -->
-    <field field_ref="fastr" level="7"/>
-    <field field_ref="slowr" level="7"/>
-    <field field_ref="streamr" level="7"/>
-    <field field_ref="lakevol" level="7"/>
-    <!-- level 8 -->
-    <field field_ref="pondr" level="8"/>
-    <field field_ref="swampmap" level="8"/>
-    <field field_ref="irrigation" level="8"/>
-    <field field_ref="netirrig" level="8"/>
-    <field field_ref="irrigmap" level="8"/>
-    <field field_ref="floodmap" level="8"/>
-    <field field_ref="floodh" level="8"/>
-    <field field_ref="floodr" level="8"/>
-    <field field_ref="floodout" level="8"/>
-    <field field_ref="evapflo" level="8"/>
-    <field field_ref="k_litt" level="8"/>
-    <field field_ref="beta" level="8"/>
-    <field field_ref="raero" level="8"/>
-    <field field_ref="cdrag" level="8"/>
-    <field field_ref="Wind" level="8"/>
-    <field field_ref="qsatt" level="8"/>
-    <field field_ref="vbeta1" level="8"/>
-    <field field_ref="vbeta4" level="8"/>
-    <field field_ref="vbeta5" level="8"/>
-    <field field_ref="gsmean" level="8"/>
-    <field field_ref="humrel" level="8"/>
-    <!-- level 10 -->
-    <field field_ref="cimean" level="10"/>
-    <field field_ref="vbeta3" level="10"/>
-    <field field_ref="rveget" level="10"/>
-    <field field_ref="rsol" level="10"/>
-    <field field_ref="vbeta2" level="10"/>
-    <field field_ref="qsintmax" level="10"/>
-    <!-- level 11 -->
-    <field field_ref="mrsos" level="11"/>
-    <field field_ref="mrso" level="11"/>
-    <field field_ref="mrros" level="11"/>
-    <field field_ref="mrro" level="11"/>
-    <field field_ref="prveg" level="11"/>
-    <field field_ref="evspsblveg" level="11"/>
-    <field field_ref="evspsblsoi" level="11"/>
-    <field field_ref="tran" level="11"/>
-    <field field_ref="treeFrac" level="11"/>
-    <field field_ref="grassFrac" level="11"/>
-    <field field_ref="cropFrac" level="11"/>
-    <field field_ref="baresoilFrac" level="11"/>
-    <field field_ref="residualFrac" level="11"/>
-    <field field_ref="PAR" level="11"/>
-    <field field_ref="PARsun" level="11"/>
-    <field field_ref="PARsh" level="11"/>
-    <field field_ref="laisun" level="11"/>
-    <field field_ref="laish" level="11"/>
-    <field field_ref="Fdf" level="11"/>
-    <field field_ref="PARsuntab" level="11"/>
-    <field field_ref="PARshtab" level="11"/>
-    <field field_ref="PARdf" level="11"/>
-    <field field_ref="PARdr" level="11"/>
-    <field field_ref="Trans" level="11"/>
-    <field field_ref="Day" level="11"/>
-    <field field_ref="Year_length" level="11"/>
-    <field field_ref="flx_fertil_no" level="11"/>
-    <field field_ref="CRF" level="11"/>
-    <field field_ref="flx_co2_bbg_year" level="11"/>
-    <field field_ref="N_qt_WRICE_year" level="11"/>
-    <field field_ref="N_qt_OTHER_year" level="11"/>
-    <field field_ref="ptnlev1" level="11"/>
-    <field field_ref="flx_iso" level="11"/>
-    <field field_ref="flx_mono" level="11"/>
-    <field field_ref="flx_ORVOC" level="11"/>
-    <field field_ref="flx_MBO" level="11"/>
-    <field field_ref="flx_methanol" level="11"/>
-    <field field_ref="flx_acetone" level="11"/>
-    <field field_ref="flx_acetal" level="11"/>
-    <field field_ref="flx_formal" level="11"/>
-    <field field_ref="flx_acetic" level="11"/>
-    <field field_ref="flx_formic" level="11"/>
-    <field field_ref="flx_no_soil" level="11"/>
-    <field field_ref="flx_no" level="11"/>
-  </file>
-
-
-  <!-- Sechiba file 2 -->
-  <file id="sechiba2" name="sechiba_out_2" output_level="2" output_freq="10800s" enabled="_AUTO_">
-    <!-- level 1 -->
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="LandPoints" level="1"/>
-    <field field_ref="Contfrac" level="1"/>
-    <field field_ref="mrsos" level="1"/>
-    <field field_ref="mrro" level="1"/>
-    <field field_ref="ptn" level="1"/>
-    <!-- level 2 -->
-    <field field_ref="cdrag" level="2"/>
-    <field field_ref="soilalb_vis" level="2"/>
-    <field field_ref="soilalb_nir" level="2"/>
-    <field field_ref="vegalb_vis" level="2"/>
-    <field field_ref="vegalb_nir" level="2"/>
-    <field field_ref="z0" level="2"/>
-    <field field_ref="coastalflow" level="2"/>
-    <field field_ref="riverflow" level="2"/>
-    <field field_ref="tsol_rad" level="2"/>
-    <field field_ref="vevapnu" level="2"/>
-    <field field_ref="temp_sol_C" level="2"/>
-    <field field_ref="qsurf" level="2"/>
-    <field field_ref="albedo" level="2"/>
-    <field field_ref="fluxsens" level="2"/>
-    <field field_ref="fluxlat" level="2"/>
-    <field field_ref="emis" level="2"/>
-    <field field_ref="riversret" level="2"/>
-    <field field_ref="hydrographs" level="2"/>
-    <!-- level 3 -->
-    <field field_ref="evap" level="3"/>
-    <field field_ref="rain" level="3"/>
-    <field field_ref="snowf" level="3"/>
-    <field field_ref="netrad" level="3"/>
-    <field field_ref="lai" level="3"/>
-    <field field_ref="basinmap" level="3"/>
-    <field field_ref="nbrivers" level="3"/>
-    <field field_ref="moistc_1" level="3"/>
-    <field field_ref="moistc_2" level="3"/>
-    <field field_ref="moistc_3" level="3"/>
-    <field field_ref="humtot_pro" level="3"/>
-    <!-- level 4 -->
-    <field field_ref="subli" level="4"/>
-    <field field_ref="runoff" level="4"/>
-    <field field_ref="drainage" level="4"/>
-    <field field_ref="tair" level="4"/>
-    <field field_ref="qair" level="4"/>
-    <field field_ref="q2m" level="4"/>
-    <field field_ref="t2m" level="4"/>
-    <field field_ref="alb_vis" level="4"/>
-    <field field_ref="alb_nir" level="4"/>
-    <field field_ref="roughheight" level="4"/>
-    <field field_ref="transpir" level="4"/>
-    <field field_ref="inter" level="4"/>
-    <field field_ref="evapnu_soil" level="4"/>
-    <field field_ref="drainage_soil" level="4"/>
-    <field field_ref="transpir_soil" level="4"/>
-    <field field_ref="runoff_soil" level="4"/>
-    <!-- level 5 -->
-    <field field_ref="tsol_max" level="5"/>
-    <field field_ref="tsol_min" level="5"/>
-    <field field_ref="snow" level="5"/>
-    <field field_ref="snowage" level="5"/>
-    <field field_ref="snownobio" level="5"/>
-    <field field_ref="snownobioage" level="5"/>
-    <field field_ref="vegetfrac" level="5"/>
-    <field field_ref="maxvegetfrac" level="5"/>
-    <field field_ref="nobiofrac" level="5"/>
-    <field field_ref="kfactroot_1" level="5"/>
-    <field field_ref="kfactroot_2" level="5"/>
-    <field field_ref="kfactroot_3" level="5"/>
-    <field field_ref="vegetsoil_1" level="5"/>
-    <field field_ref="vegetsoil_2" level="5"/>
-    <field field_ref="vegetsoil_3" level="5"/>
-    <!-- level 6 -->
-    <field field_ref="dss" level="6"/>
-    <field field_ref="gqsb" level="6"/>
-    <field field_ref="bqsb" level="6"/>
-    <field field_ref="humtot" level="6"/>
-    <field field_ref="humtot_soil" level="6"/>
-    <field field_ref="SWI" level="6"/>
-    <field field_ref="qsintveg" level="6"/>
-    <field field_ref="rstruct" level="6"/>
-    <field field_ref="gpp" level="6"/>
-    <field field_ref="nee" level="6"/>
-    <field field_ref="maint_resp" level="6"/>
-    <field field_ref="hetero_resp" level="6"/>
-    <field field_ref="growth_resp" level="6"/>
-    <field field_ref="npp" level="6"/>
-    <field field_ref="precisol" level="6"/>
-    <field field_ref="drysoil_frac" level="6"/>
-    <field field_ref="evapot" level="6"/>
-    <field field_ref="evapot_corr" level="6"/>
-    <field field_ref="twbr" level="6"/>
-    <!-- level 7 -->
-    <field field_ref="swnet" level="7"/>
-    <field field_ref="swdown" level="7"/>
-    <field field_ref="lwdown" level="7"/>
-    <field field_ref="lwnet" level="7"/>
-    <!-- level 8 -->
-    <field field_ref="fastr" level="8"/>
-    <field field_ref="slowr" level="8"/>
-    <field field_ref="streamr" level="8"/>
-    <field field_ref="floodr" level="8"/>
-    <field field_ref="floodh" level="8"/>
-    <field field_ref="pondr" level="8"/>
-    <field field_ref="lakevol" level="8"/>
-    <field field_ref="irrigation" level="8"/>
-    <field field_ref="netirrig" level="8"/>
-    <field field_ref="irrigmap" level="8"/>
-    <field field_ref="floodmap" level="8"/>
-    <field field_ref="swampmap" level="8"/>
-    <!-- level 9 -->
-    <field field_ref="beta" level="9"/>
-    <field field_ref="raero" level="9"/>
-    <field field_ref="Wind" level="9"/>
-    <field field_ref="qsatt" level="9"/>
-    <field field_ref="vbeta1" level="9"/>
-    <field field_ref="vbeta4" level="9"/>
-    <field field_ref="gsmean" level="9"/>
-    <field field_ref="vbeta5" level="9"/>
-    <field field_ref="reinf_slope" level="9"/>
-    <field field_ref="soilindex" level="9"/>
-    <field field_ref="humrel" level="9"/>
-    <!-- level 10 -->
-    <field field_ref="cimean" level="10"/>
-    <field field_ref="vbeta3" level="10"/>
-    <field field_ref="rveget" level="10"/>
-    <field field_ref="rsol" level="10"/>
-    <field field_ref="vbeta2" level="10"/>
-    <field field_ref="qsintmax" level="10"/>
-    <field field_ref="PAR" level="10"/>
-    <field field_ref="PARsun" level="10"/>
-    <field field_ref="PARsh" level="10"/>
-    <field field_ref="laisun" level="10"/>
-    <field field_ref="laish" level="10"/>
-    <field field_ref="Fdf" level="10"/>
-    <field field_ref="PARsuntab" level="10"/>
-    <field field_ref="PARshtab" level="10"/>
-    <field field_ref="PARdf" level="10"/>
-    <field field_ref="PARdr" level="10"/>
-    <field field_ref="Trans" level="10"/>
-    <field field_ref="Day" level="10"/>
-    <field field_ref="Year_length" level="10"/>
-    <field field_ref="flx_fertil_no" level="10"/>
-    <field field_ref="CRF" level="10"/>
-    <field field_ref="flx_co2_bbg_year" level="10"/>
-    <field field_ref="N_qt_WRICE_year" level="10"/>
-    <field field_ref="N_qt_OTHER_year" level="10"/>
-    <field field_ref="ptnlev1" level="10"/>
-    <field field_ref="flx_iso" level="10"/>
-    <field field_ref="flx_mono" level="10"/>
-    <field field_ref="flx_ORVOC" level="10"/>
-    <field field_ref="flx_MBO" level="10"/>
-    <field field_ref="flx_methanol" level="10"/>
-    <field field_ref="flx_acetone" level="10"/>
-    <field field_ref="flx_acetal" level="10"/>
-    <field field_ref="flx_formal" level="10"/>
-    <field field_ref="flx_acetic" level="10"/>
-    <field field_ref="flx_formic" level="10"/>
-    <field field_ref="flx_no_soil" level="10"/>
-    <field field_ref="flx_no" level="10"/>
-  </file>
-
-  <!-- Sechiba alma file 1 -->
-  <file id="sechiba1_alma" name="sechiba_history_alma" output_level="10" output_freq="1800s" enabled=".FALSE.">
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="LandPoints" level="1"/>
-    <field field_ref="Contfrac" level="1"/>
-    <field field_ref="Qg" level="1"/>
-    <field field_ref="Qv" level="1"/>
-    <field field_ref="Qs" level="1"/>
-    <field field_ref="Qsb" level="1"/>
-    <field field_ref="DelSurfHeat" level="1"/>
-    <field field_ref="DelColdCont" level="1"/>
-    <field field_ref="fluxsens" name="Qh" level="1"/>
-    <field field_ref="fluxlat" name="Qle" level="1"/>
-    <field field_ref="lwnet" name="LWnet" level="1"/>
-    <field field_ref="swnet" name="SWnet" level="1"/>
-    <field field_ref="snowf_alma" level="1"/>
-    <field field_ref="rain_alma" level="1"/>
-    <field field_ref="evap_alma" name="Evap" level="1"/>
-    <field field_ref="Qsm" level="1"/>
-    <field field_ref="irrigation_alma" level="1"/>
-    <field field_ref="netirrig_alma" level="1"/>
-    <field field_ref="temp_sol_K" level="1"/>
-    <field field_ref="PotSurfT" level="1"/>
-    <field field_ref="albedo_alma" level="1"/>
-    <field field_ref="SurfStor" level="1"/>
-    <field field_ref="snow" name="SWE" long_name="Snow Water Equivalent" level="1"/>
-    <field field_ref="SoilWet" level="1"/>
-    <field field_ref="evapot_corr_alma" level="1"/>
-    <field field_ref="evapot_alma" level="1"/>
-    <field field_ref="ECanop" level="1"/>
-    <field field_ref="TVeg" level="1"/>
-    <field field_ref="SubSnow" level="1"/>
-    <field field_ref="irrigmap" name="IrrigationMap" level="1"/>
-    <field field_ref="floodmap" name="FloodplainsMap" level="1"/>
-    <field field_ref="swampmap" name="SwampMap" level="1"/>
-    <field field_ref="hydrographs" name="Dis" level="1"/>
-    <field field_ref="gpp" name="GPP" level="1"/>
-    <field field_ref="nee" name="NEE" level="1"/>
-    <field field_ref="maint_resp" level="1"/>
-    <field field_ref="hetero_resp" level="1"/>
-    <field field_ref="growth_resp" level="1"/>
-    <field field_ref="npp" level="1"/>
-    <field field_ref="z0" name="Z0" long_name="Roughness height" level="1"/>
-    <field field_ref="roughheight" name="EffectHeight" long_name="Effective displacement height (h-d)" level="1"/>
-    <field field_ref="DelSoilMoist" level="1"/>
-    <field field_ref="DelSurfStor" level="1"/>
-    <field field_ref="DelIntercept" level="1"/>
-    <field field_ref="DelSWE" level="1"/>
-    <field field_ref="vevapnu_alma" level="1"/>
-    <field field_ref="evapflo_alma" level="1"/>
-    <field field_ref="ACond" level="1"/>
-    <field field_ref="tair" name="Tair" level="2"/>
-    <field field_ref="qair" name="Qair" level="2"/>
-    <field field_ref="Qf" level="2"/>
-    <field field_ref="vegetfrac" level="3"/>
-    <field field_ref="maxvegetfrac" level="3"/>
-    <field field_ref="nobiofrac" level="3"/>
-    <field field_ref="SoilMoist" level="7"/>
-    <field field_ref="RootMoist" level="1"/>
-    <field field_ref="ptn" name="SoilTemp" level="7"/>
-    <field field_ref="vbeta1" name="SnowFrac" level="7"/>
-    <field field_ref="SAlbedo" level="7"/>
-    <field field_ref="SnowDepth" level="7"/>
-    <field field_ref="temp_sol_K" name="RadT" level="1"/>
-    <field field_ref="twbr" level="1"/>
-  </file>
-
-  <!-- Sechiba alma file 2 -->
-  <file id="sechiba2_alma" name="sechiba_out_2_alma" output_level="10" output_freq="1800s" enabled=".FALSE.">
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="LandPoints" level="1"/>
-    <field field_ref="Contfrac" level="1"/>
-    <field field_ref="Qg" level="1"/>
-    <field field_ref="Qv" level="1"/>
-    <field field_ref="Qs" level="1"/>
-    <field field_ref="Qsb" level="1"/>
-    <field field_ref="DelSurfHeat" level="1"/>
-    <field field_ref="DelColdCont" level="1"/>
-    <field field_ref="fluxsens" name="Qh" level="1"/>
-    <field field_ref="fluxlat" name="Qle" level="1"/>
-    <field field_ref="lwnet" name="LWnet" level="1"/>
-    <field field_ref="swnet" name="SWnet" level="1"/>
-    <field field_ref="snowf_alma" level="1"/>
-    <field field_ref="rain_alma" level="1"/>
-    <field field_ref="evap_alma" name="Evap" level="1"/>
-    <field field_ref="Qsm" level="1"/>
-    <field field_ref="irrigation_alma" level="1"/>
-    <field field_ref="netirrig_alma" level="1"/>
-    <field field_ref="temp_sol_K" level="1"/>
-    <field field_ref="albedo_alma" level="1"/>
-    <field field_ref="SurfStor" level="1"/>
-    <field field_ref="snow" name="SWE" long_name="Snow Water Equivalent" level="1"/>
-    <field field_ref="SoilWet" level="1"/>
-    <field field_ref="evapot_corr_alma" level="1"/>
-    <field field_ref="ECanop" level="1"/>
-    <field field_ref="TVeg" level="1"/>
-    <field field_ref="SubSnow" level="1"/>
-    <field field_ref="irrigmap" name="IrrigationMap" level="1"/>
-    <field field_ref="floodmap" name="FloodplainsMap" level="1"/>
-    <field field_ref="swampmap" name="SwampMap" level="1"/>
-    <field field_ref="hydrographs" name="Dis" level="1"/>
-    <field field_ref="gpp" name="GPP" level="1"/>
-    <field field_ref="nee" name="NEE" level="1"/>
-    <field field_ref="maint_resp" level="1"/>
-    <field field_ref="hetero_resp" level="1"/>
-    <field field_ref="growth_resp" level="1"/>
-    <field field_ref="npp" level="1"/>
-    <field field_ref="DelSoilMoist" level="1"/>
-    <field field_ref="DelSurfStor" level="1"/>
-    <field field_ref="DelIntercept" level="1"/>
-    <field field_ref="DelSWE" level="1"/>
-    <field field_ref="vevapnu_alma" level="1"/>
-    <field field_ref="evapflo_alma" level="1"/>
-    <field field_ref="ACond" level="1"/>
-    <field field_ref="SoilMoist" level="7"/>
-    <field field_ref="RootMoist" level="1"/>
-    <field field_ref="ptn" name="SoilTemp" level="7"/>
-    <field field_ref="vbeta1" name="SnowFrac" level="7"/>
-    <field field_ref="SAlbedo" level="7"/>
-    <field field_ref="SnowDepth" level="7"/>
-    <field field_ref="Qf" level="2"/>
-    <field field_ref="vegetfrac" level="3"/>
-    <field field_ref="maxvegetfrac" level="3"/>
-    <field field_ref="nobiofrac" level="3"/>
-    <field field_ref="temp_sol_K" name="RadT" level="5"/>
-  </file>
-
-  <!-- Definition of files with stomate diagnostics -->
-  <!-- Stomate file 1 -->
-  <file id="stomate1" name="stomate_history" output_level="10" output_freq="_AUTO_" enabled="_AUTO_">
-    <!-- level 1 -->
-    <field field_ref="RESOLUTION_X" level="1"/>
-    <field field_ref="RESOLUTION_Y" level="1"/>
-    <field field_ref="CONTFRAC_STOMATE" level="1"/>
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="T2M_MONTH" level="1"/>
-    <field field_ref="T2M_WEEK" level="1"/>
-    <field field_ref="FIREFRAC" level="1"/>
-    <field field_ref="CO2FLUX" level="1"/>
-    <field field_ref="CO2_FIRE" level="1"/>
-    <field field_ref="CO2_TAKEN" level="1"/>
-    <field field_ref="LAI" level="1"/>
-    <field field_ref="VEGET_MAX" level="1"/>
-    <field field_ref="NPP_STOMATE" level="1"/>
-    <field field_ref="GPP" level="1"/>
-    <!-- level 2 -->
-    <field field_ref="LEAF_M" level="2"/>
-    <field field_ref="SAP_M_AB" level="2"/>
-    <field field_ref="SAP_M_BE" level="2"/>
-    <field field_ref="HEART_M_AB" level="2"/>
-    <field field_ref="HEART_M_BE" level="2"/>
-    <field field_ref="ROOT_M" level="2"/>
-    <field field_ref="FRUIT_M" level="2"/>
-    <field field_ref="RESERVE_M" level="2"/>
-    <field field_ref="MAINT_RESP" level="2"/>
-    <field field_ref="GROWTH_RESP" level="2"/>
-    <!-- level 3 -->
-    <field field_ref="IND" level="3"/>
-    <field field_ref="ADAPTATION" level="3"/>
-    <field field_ref="REGENERATION" level="3"/>
-    <field field_ref="CN_IND" level="3"/>
-    <field field_ref="WOODMASS_IND" level="3"/>
-    <field field_ref="MOISTRESS" level="3"/>
-    <field field_ref="HET_RESP" level="3"/>
-    <!-- level 4 -->
-    <field field_ref="SAP_AB_TURN" level="4"/>
-    <field field_ref="ROOT_TURN" level="4"/>
-    <field field_ref="FRUIT_TURN" level="4"/>
-    <field field_ref="TOTAL_BM_LITTER" level="4"/>
-    <field field_ref="LEAF_BM_LITTER" level="4"/>
-    <field field_ref="SAP_AB_BM_LITTER" level="4"/>
-    <field field_ref="SAP_BE_BM_LITTER" level="4"/>
-    <field field_ref="HEART_AB_BM_LITTER" level="4"/>
-    <field field_ref="HEART_BE_BM_LITTER" level="4"/>
-    <field field_ref="ROOT_BM_LITTER" level="4"/>
-    <field field_ref="FRUIT_BM_LITTER" level="4"/>
-    <field field_ref="RESERVE_BM_LITTER" level="4"/>
-    <field field_ref="TOTAL_M" level="4"/>
-    <field field_ref="TOTAL_TURN" level="4"/>
-    <field field_ref="LEAF_TURN" level="4"/>
-    <!-- level 5 -->
-    <field field_ref="LITTER_STR_AB" level="5"/>
-    <field field_ref="LITTER_MET_AB" level="5"/>
-    <field field_ref="LITTER_STR_BE" level="5"/>
-    <field field_ref="LITTER_MET_BE" level="5"/>
-    <field field_ref="DEADLEAF_COVER" level="5"/>
-    <field field_ref="TOTAL_SOIL_CARB" level="5"/>
-    <field field_ref="CARBON_ACTIVE" level="5"/>
-    <field field_ref="CARBON_SLOW" level="5"/>
-    <field field_ref="CARBON_PASSIVE" level="5"/>
-    <field field_ref="LITTERHUM" level="5"/>
-    <field field_ref="BM_ALLOC_LEAF" level="5"/>
-    <field field_ref="BM_ALLOC_SAP_AB" level="5"/>
-    <field field_ref="BM_ALLOC_SAP_BE" level="5"/>
-    <field field_ref="BM_ALLOC_ROOT" level="5"/>
-    <field field_ref="BM_ALLOC_FRUIT" level="5"/>
-    <field field_ref="BM_ALLOC_RES" level="5"/>
-    <field field_ref="HERBIVORES" level="5"/>
-    <field field_ref="TURNOVER_TIME" level="5"/>
-    <field field_ref="PROD10" level="5"/>
-    <field field_ref="FLUX10" level="5"/>
-    <field field_ref="PROD100" level="5"/>
-    <field field_ref="FLUX100" level="5"/>
-    <field field_ref="CONVFLUX" level="5"/>
-    <field field_ref="CFLUX_PROD10" level="5"/>
-    <field field_ref="CFLUX_PROD100" level="5"/>
-    <field field_ref="HARVEST_ABOVE" level="5"/>
-    <!-- level 6 -->
-    <field field_ref="VCMAX" level="6"/>
-    <field field_ref="LEAF_AGE" level="6"/>
-    <field field_ref="MORTALITY" level="6"/>
-    <field field_ref="FIREDEATH" level="6"/>
-    <field field_ref="IND_ESTAB" level="6"/>
-    <field field_ref="ESTABTREE" level="6"/>
-    <field field_ref="ESTABGRASS" level="6"/>
-    <field field_ref="LIGHT_DEATH" level="6"/>
-    <!-- level 7 -->
-    <field field_ref="AGE" level="7"/>
-    <field field_ref="HEIGHT" level="7"/>
-    <!-- level 9 -->
-    <field field_ref="WHEN_GROWTHINIT" level="9"/>
-    <field field_ref="PFTPRESENT" level="9"/>
-    <field field_ref="GDD_MIDWINTER" level="9"/>
-    <field field_ref="GDD_M5_DORMANCE" level="9"/>
-    <field field_ref="NCD_DORMANCE" level="9"/>
-    <field field_ref="ALLOW_INITPHENO" level="9"/>
-    <field field_ref="BEGIN_LEAVES" level="9"/>
-    <field field_ref="T2M_LONGTERM" level="9"/>
-    <!-- level 10 -->
-    <field field_ref="FIREINDEX" level="10"/>
-  </file>
-
-  <!-- Stomate file 2 -->
-  <file id="stomate2" name="stomate_ipcc_history" output_level="1" output_freq="_AUTO_" enabled="_AUTO_">
-    <!-- level 1 -->
-    <field field_ref="RESOLUTION_X" level="1"/>
-    <field field_ref="RESOLUTION_Y" level="1"/>
-    <field field_ref="CONTFRAC_STOMATE" level="1"/>
-    <field field_ref="Areas" level="1"/>
-    <field field_ref="cVeg" level="1"/>
-    <field field_ref="cLitter" level="1"/>
-    <field field_ref="cSoil" level="1"/>
-    <field field_ref="cProduct" level="1"/>
-    <field field_ref="cMassVariation" level="1"/>
-    <field field_ref="lai_ipcc" level="1"/>
-    <field field_ref="gpp_ipcc" level="1"/>
-    <field field_ref="ra" level="1"/>
-    <field field_ref="npp_ipcc" level="1"/>
-    <field field_ref="rh" level="1"/>
-    <field field_ref="fFire" level="1"/>
-    <field field_ref="fHarvest" level="1"/>
-    <field field_ref="fLuc" level="1"/>
-    <field field_ref="nbp" level="1"/>
-    <field field_ref="fVegLitter" level="1"/>
-    <field field_ref="fLitterSoil" level="1"/>
-    <field field_ref="cLeaf" level="1"/>
-    <field field_ref="cWood" level="1"/>
-    <field field_ref="cRoot" level="1"/>
-    <field field_ref="cMisc" level="1"/>
-    <field field_ref="cLitterAbove" level="1"/>
-    <field field_ref="cLitterBelow" level="1"/>
-    <field field_ref="cSoilFast" level="1"/>
-    <field field_ref="cSoilMedium" level="1"/>
-    <field field_ref="cSoilSlow" level="1"/>
-    <field field_ref="landCoverFrac" level="1"/>
-    <field field_ref="treeFracPrimDec" level="1"/>
-    <field field_ref="treeFracPrimEver" level="1"/>
-    <field field_ref="c3PftFrac" level="1"/>
-    <field field_ref="c4PftFrac" level="1"/>
-    <field field_ref="rGrowth" level="1"/>
-    <field field_ref="rMaint" level="1"/>
-    <field field_ref="nppLeaf" level="1"/>
-    <field field_ref="nppWood" level="1"/>
-    <field field_ref="nppRoot" level="1"/>
-    <field field_ref="nep" level="1"/>
-  </file>
-</file_definition>
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_128x118
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_128x118	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_128x118	(revision 2770)
@@ -0,0 +1,50 @@
+## $Id$
+## This parameter set up contains a zoom over Europe
+##
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=2880
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=1200.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=1200.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=1200.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 60
+## longitude en degres du centre du zoom                                 
+clon=8.5
+## latitude en degres du centre du zoom                                  
+clat=50.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=4.48751
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=3.40784
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.208914
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.243706
+##raideur du zoom en  X
+taux=10.
+##raideur du zoom en  Y
+tauy=10.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_128x118x39
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_128x118x39	(revision 2769)
+++ 	(revision )
@@ -1,56 +1,0 @@
-## $Id$
-## This parameter set up contains a zoom over Europe
-##
-## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
-day_step=2880
-## periode pour le pas Matsuno (en pas)
-iperiod=5
-## choix de l'operateur de dissipation (star ou  non star )
-lstardis=y
-## nombre d'iterations de l'operateur de dissipation   gradiv
-nitergdiv=1
-## nombre d'iterations de l'operateur de dissipation  nxgradrot
-nitergrot=2
-## nombre d'iterations de l'operateur de dissipation  divgrad            
-niterh=2
-## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
-tetagdiv=1200.
-## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
-tetagrot=1200.
-## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
-tetatemp=1200.
-## coefficient pour gamdissip                                            
-coefdis=0.
-## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
-purmats=n
-## avec ou sans physique                                                 
-physic=y
-## periode de la physique (en pas)                                       
-## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
-iphysiq=_AUTO_ : DEFAULT = 60
-##  Avec ou sans strato
-ok_strato=y 
-#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
-iflag_top_bound=2
-#  Coefficient pour la couche eponge (valeur derniere couche)
-tau_top_bound=5.e-5
-## longitude en degres du centre du zoom                                 
-clon=8.5
-## latitude en degres du centre du zoom                                  
-clat=50.
-## facteur de grossissement du zoom,selon longitude                      
-grossismx=4.48751
-## facteur de grossissement du zoom ,selon latitude                      
-grossismy=3.40784
-##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
-fxyhypb=y
-## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
-dzoomx=0.208914
-## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
-dzoomy=0.243706
-##raideur du zoom en  X
-taux=10.
-##raideur du zoom en  Y
-tauy=10.
-##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
-ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142	(revision 2770)
@@ -0,0 +1,57 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=720
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=3600.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=7200.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=7200.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno:y ou Matsuno-leapfrog:n) 
+purmats=n
+## avec ou sans physique
+## 0: pas de physique (e.g. en mode Shallow Water)
+## 1: avec physique (e.g. physique phylmd)
+## 2: avec rappel newtonien dans la dynamique                                         
+iflag_phys=1
+## avec ou sans fichiers de demarrage (start.nc, startphy.nc) ?
+## (sans fichiers de demarrage, initialisation des champs par iniacademic
+##  dans la dynamique)
+read_start=y
+## periode de la physique (en pas dynamiques, n'a de sens que si iflag_phys=1)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 5
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
+##
+ngroup=4
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142x39
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142x39	(revision 2769)
+++ 	(revision )
@@ -1,54 +1,0 @@
-## $Id$
-## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
-day_step=720
-## periode pour le pas Matsuno (en pas)
-iperiod=5
-## choix de l'operateur de dissipation (star ou  non star )
-lstardis=y
-## nombre d'iterations de l'operateur de dissipation   gradiv
-nitergdiv=1
-## nombre d'iterations de l'operateur de dissipation  nxgradrot
-nitergrot=2
-## nombre d'iterations de l'operateur de dissipation  divgrad            
-niterh=2
-## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
-tetagdiv=3600.
-## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
-tetagrot=5400.
-## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
-tetatemp=5400.
-## coefficient pour gamdissip                                            
-coefdis=0.
-## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
-purmats=n
-## avec ou sans physique                                                 
-physic=y
-## periode de la physique (en pas)                                       
-## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
-iphysiq=_AUTO_ : DEFAULT = 15
-##  Avec ou sans strato
-ok_strato=y
-#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
-iflag_top_bound=2
-#  Coefficient pour la couche eponge (valeur derniere couche)
-tau_top_bound=5.e-5
-## longitude en degres du centre du zoom                                 
-clon=0.
-## latitude en degres du centre du zoom                                  
-clat=0.
-## facteur de grossissement du zoom,selon longitude                      
-grossismx=1.0
-## facteur de grossissement du zoom ,selon latitude                      
-grossismy=1.0
-##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
-fxyhypb=y
-## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
-dzoomx=0.0
-## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
-dzoomy=0.0
-##raideur du zoom en  X
-taux=3.
-##raideur du zoom en  Y
-tauy=3.
-##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
-ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142x79
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_144x142x79	(revision 2769)
+++ 	(revision )
@@ -1,93 +1,0 @@
-## $Id: gcm.def 1403 2010-07-01 09:02:53Z fairhead $
-## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
-day_step=720
-## periode pour le pas Matsuno (en pas)
-iperiod=5
-## choix de l'operateur de dissipation (star ou  non star )
-lstardis=y
-## nombre d'iterations de l'operateur de dissipation   gradiv
-nitergdiv=1
-## nombre d'iterations de l'operateur de dissipation  nxgradrot
-nitergrot=2
-## nombre d'iterations de l'operateur de dissipation  divgrad            
-niterh=2
-## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
-tetagdiv=1800.
-## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
-#tetagrot=5400.
-tetagrot=7200.
-## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
-tetatemp=5400.
-## coefficient pour gamdissip                                            
-coefdis=0.
-## choix du shema d'integration temporelle (Matsuno:y ou Matsuno-leapfrog:n) 
-purmats=n
-## avec ou sans physique
-## 0: pas de physique (e.g. en mode Shallow Water)
-## 1: avec physique (e.g. physique phylmd)
-## 2: avec rappel newtonien dans la dynamique                                         
-iflag_phys=1
-## avec ou sans fichiers de demarrage (start.nc, startphy.nc) ?
-## (sans fichiers de demarrage, initialisation des champs par iniacademic
-##  dans la dynamique)
-read_start=y
-## periode de la physique (en pas dynamiques, n'a de sens que si iflag_phys=1)                                       
-iphysiq=_AUTO_ : DEFAULT = 5
-#
-#### Verticale discretisation
-## Modified verticale discretisation for stratospheric versions.
-## The new version can be controled by following parameters
-## Al the parameters are given in km assuming a given scalehigh
-vert_sampling=strato_custom
-## scale hight
-vert_scale=7.
-## width of first layer
-vert_dzmin=0.017
-## dz in the low atmosphere
-vert_dzlow=1.
-## height at which resolution recches dzlow
-vert_z0low=8.7
-## dz in the mid atmsophere
-vert_dzmid=2.
-## height at which resolution recches dzmid
-vert_z0mid=70.
-## width of the transition
-vert_h_mid=20.
-## dz in the high atmsophere
-vert_dzhig=11.
-## height at which resolution recches dz
-vert_z0hig=75.
-## width of the transition
-vert_h_hig=20.
-## vert_prof_dissip used to choose the vertical profile
-## of horizontal dissipation (values are 0 and 1)
-vert_prof_dissip = 1
-dissip_zref = 50
-##  Avec ou sans strato
-ok_strato=y 
-#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
-iflag_top_bound=2
-#  Coefficient pour la couche eponge (valeur derniere couche)
-tau_top_bound=5.e-4
-#
-### Parametres du zoom
-## longitude en degres du centre du zoom                                 
-clon=0.
-## latitude en degres du centre du zoom                                  
-clat=0.
-## facteur de grossissement du zoom,selon longitude                      
-grossismx=1.0
-## facteur de grossissement du zoom ,selon latitude                      
-grossismy=1.0
-##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
-fxyhypb=y
-## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
-dzoomx=0.0
-## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
-dzoomy=0.0
-##raideur du zoom en  X
-taux=3.
-##raideur du zoom en  Y
-tauy=3.
-##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
-ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_96x95
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_96x95	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_96x95	(revision 2770)
@@ -0,0 +1,48 @@
+## $Id$
+## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
+day_step=480
+## periode pour le pas Matsuno (en pas)
+iperiod=5
+## choix de l'operateur de dissipation (star ou  non star )
+lstardis=y
+## nombre d'iterations de l'operateur de dissipation   gradiv
+nitergdiv=1
+## nombre d'iterations de l'operateur de dissipation  nxgradrot
+nitergrot=2
+## nombre d'iterations de l'operateur de dissipation  divgrad            
+niterh=2
+## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
+tetagdiv=5400.
+## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
+tetagrot=5400.
+## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
+tetatemp=5400.
+## coefficient pour gamdissip                                            
+coefdis=0.
+## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
+purmats=n
+## avec ou sans physique                                                 
+physic=y
+## periode de la physique (en pas)                                       
+## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
+iphysiq=_AUTO_ : DEFAULT = 10
+## longitude en degres du centre du zoom                                 
+clon=0.
+## latitude en degres du centre du zoom                                  
+clat=0.
+## facteur de grossissement du zoom,selon longitude                      
+grossismx=1.0
+## facteur de grossissement du zoom ,selon latitude                      
+grossismy=1.0
+##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
+fxyhypb=y
+## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
+dzoomx=0.0
+## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
+dzoomy=0.0
+##raideur du zoom en  X
+taux=3.
+##raideur du zoom en  Y
+tauy=3.
+##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
+ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_96x95x39
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/gcm.def_96x95x39	(revision 2769)
+++ 	(revision )
@@ -1,54 +1,0 @@
-## $Id$
-## nombre de pas par jour (multiple de iperiod) ( ici pour  dt = 1 min )      
-day_step=480
-## periode pour le pas Matsuno (en pas)
-iperiod=5
-## choix de l'operateur de dissipation (star ou  non star )
-lstardis=y
-## nombre d'iterations de l'operateur de dissipation   gradiv
-nitergdiv=1
-## nombre d'iterations de l'operateur de dissipation  nxgradrot
-nitergrot=2
-## nombre d'iterations de l'operateur de dissipation  divgrad            
-niterh=2
-## temps de dissipation des plus petites long.d ondes pour u,v (gradiv)  
-tetagdiv=5400.
-## temps de dissipation des plus petites long.d ondes pour u,v(nxgradrot)
-tetagrot=5400.
-## temps de dissipation des plus petites long.d ondes pour  h ( divgrad) 
-tetatemp=5400.
-## coefficient pour gamdissip                                            
-coefdis=0.
-## choix du shema d'integration temporelle (Matsuno ou Matsuno-leapfrog) 
-purmats=n
-## avec ou sans physique                                                 
-physic=y
-## periode de la physique (en pas)                                       
-## iphysiq est modifie pour la nouvelle physique par le lmdz.driver pour les autres cas le valeur par defaut est utilise
-iphysiq=_AUTO_ : DEFAULT = 10
-##  Avec ou sans strato
-ok_strato=y 
-#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
-iflag_top_bound=2
-#  Coefficient pour la couche eponge (valeur derniere couche)
-tau_top_bound=5.e-5
-## longitude en degres du centre du zoom                                 
-clon=0.
-## latitude en degres du centre du zoom                                  
-clat=0.
-## facteur de grossissement du zoom,selon longitude                      
-grossismx=1.0
-## facteur de grossissement du zoom ,selon latitude                      
-grossismy=1.0
-##  Fonction  f(y)  hyperbolique  si = .true.  , sinon  sinusoidale         
-fxyhypb=y
-## extension en longitude  de la zone du zoom  ( fraction de la zone totale)
-dzoomx=0.0
-## extension en latitude de la zone  du zoom  ( fraction de la zone totale)
-dzoomy=0.0
-##raideur du zoom en  X
-taux=3.
-##raideur du zoom en  Y
-tauy=3.
-##  Fonction  f(y) avec y = Sin(latit.) si = .true. , sinon y = latit.         
-ysinus=y
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_CWRR
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_CWRR	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_CWRR	(revision 2770)
@@ -33,11 +33,4 @@
 HYDROL_CWRR = y
 
-# Total depth of soil reservoir
-# default = 2./4. depending on HYDROL_CWRR
-HYDROL_SOIL_DEPTH = 2.
-
-# Root profile
-HYDROL_HUMCSTE = 5.0, 0.8, 0.8, 1.0, 0.8, 0.8, 1.0, 1.0, 0.8, 4.0, 4.0, 4.0, 4.0 
-
 # Activate river routing
 # default = n
@@ -62,8 +55,4 @@
 # Parmeters related to vegetation map
 #**************************************************************************
-# Read a land_use vegetation map
-# default = n
-LAND_USE = y
-
 # Year of the land_use vegetation map readed
 # year off the pft map
@@ -83,12 +72,4 @@
 VEGET_UPDATE = _AUTO_
 
-# treat land use modifications
-# With this variable, you can use a Land Use map
-# to simulate anthropic modifications such as   
-# deforestation.                                
-# If LAND_USE
-# default = y
-LAND_COVER_CHANGE = _AUTO_
-
 # Do not use default fire module
 FIRE_DISABLE = y
@@ -98,2 +79,17 @@
 RIVER_DESC_FILE =  river_desc.nc
 
+# Read bare soil albedo from file with background MODIS data
+ALB_BG_MODIS = y
+
+# Parameter related to chemistry bvoc 
+#************************************************************************
+# CHEMISTRY_OK_BVOC ([FLAG]) :  Activate chemistry    {OK_SECHIBA}
+# default =  n 
+CHEMISTRY_BVOC =  n
+
+# CO2 FOR BVOC - WILKINSON ([FLAG]) :  CO2 inhibition effect for isoprene based on Wilkinson approach?    {CHEMISTRY_OK_BVOC }
+CO2_FOR_BVOC_WILKINSON=n
+
+# CO2 FOR BVOC - POSSELL ([FLAG]) :  CO2 inhibition effect for isoprene based on Possell approach?    {CHEMISTRY_OK_BVOC }
+CO2_FOR_BVOC_POSSELL=n
+
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_Choi
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_Choi	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/orchidee.def_Choi	(revision 2770)
@@ -62,8 +62,4 @@
 # Parmeters related to vegetation map
 #**************************************************************************
-# Read a land_use vegetation map
-# default = n
-LAND_USE = y
-
 # Year of the land_use vegetation map readed
 # year off the pft map
@@ -82,12 +78,4 @@
 # default = 1Y
 VEGET_UPDATE = _AUTO_
-
-# treat land use modifications
-# With this variable, you can use a Land Use map
-# to simulate anthropic modifications such as   
-# deforestation.                                
-# If LAND_USE
-# default = y
-LAND_COVER_CHANGE = _AUTO_
 
 # Do not use default fire module
@@ -109,2 +97,3 @@
 # CO2 FOR BVOC - POSSELL ([FLAG]) :  CO2 inhibition effect for isoprene based on Possell approach?    {CHEMISTRY_OK_BVOC }
 CO2_FOR_BVOC_POSSELL=n
+
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_AP
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_AP	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_AP	(revision 2770)
@@ -0,0 +1,95 @@
+## $Id$
+#
+##  Choix ou non  de  New oliq               
+new_oliq=y
+##  Orodr  ou  non   pour l orographie              
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
+ok_limitvrai=n
+##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
+iflag_con=30
+## Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+#
+
+### niveau du diagnostique de conservation d energie
+if_ebil=0
+#
+# parametres KE
+#
+### epmax = Efficacite precipitation maximale
+epmax = .999
+### ok_adj_ema = ?? pas utilise
+ok_adj_ema = n
+### iflag_clw Flag calcul eau liquide
+# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
+# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
+# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
+iflag_clw = 1
+# 
+# parametres nuages
+#
+### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
+cld_lc_lsc = 4.16e-4
+### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
+cld_lc_con = 4.16e-4
+### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
+cld_tau_lsc = 1800.
+### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
+cld_tau_con = 1800.
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
+ffallv_lsc = 0.5
+### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
+ffallv_con = 0.5
+### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
+coef_eva = 2.e-5
+### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
+reevap_ice = y
+### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
+# - iflag_cldcon<=-1 diag. rain_Tiedtke 
+# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
+# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
+# - iflag_cldcon=3,   ratqs=ratqss
+iflag_cldcon = 3
+### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
+# - iflag_pdf=0, version ratqs, 
+# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
+# -              des PDFS de Sandrine Bony 
+iflag_pdf = 1
+### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
+fact_cldcon = 1.
+### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
+facttemps = 0.
+## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
+ok_newmicro = y
+### iflag_ratqs=0 correspond a la version IPCC AR4 
+iflag_ratqs=0
+### ratqsbas     ratqs en bas si iflag_cldcon=1 
+ratqsbas = 0.005
+### ratqshaut    ratqs en haut pour ratqss "stables"  
+ratqshaut = 0.33
+### rad_froid    rayon cristaux des nuages de glace "froids" 
+rad_froid = 35
+### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
+rad_chau1=12
+### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
+rad_chau2=11
+# 
+# Coefficient et parametres sur les drags
+#
+f_cdrag_ter=1.
+f_cdrag_stable=1.
+f_cdrag_oce=0.8
+f_rugoro=0.
+### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
+ksta_ter=1.e-7
+### cdmmax =     cdrag maximum pour le moment
+cdmmax = 2.5E-3
+### cdhmax =     cdrag maximum pour l energie
+cdhmax = 2.0E-3
+
+### nsplit_phys (D=1) 
+nsplit_phys=1
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L19_AP
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L19_AP	(revision 2769)
+++ 	(revision )
@@ -1,97 +1,0 @@
-## $Id$
-#
-##  Choix ou non  de  New oliq               
-new_oliq=y
-##  Activation ou non de la parametrisation de Hines pour la strato
-ok_hines=n
-##  Orodr  ou  non   pour l orographie              
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
-ok_limitvrai=n
-##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
-iflag_con=30
-## Facteur multiplication des precip convectives dans KE
-cvl_corr=1.0
-#
-#
-### niveau du diagnostique de conservation d energie
-if_ebil=0
-#
-# parametres KE
-#
-### epmax = Efficacite precipitation maximale
-epmax = .99
-### ok_adj_ema = ?? pas utilise
-ok_adj_ema = n
-### iflag_clw Flag calcul eau liquide
-# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
-# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
-# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
-iflag_clw = 1
-# 
-# parametres nuages
-#
-### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
-cld_lc_lsc = 2.6e-4
-### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
-cld_lc_con = 2.6e-4
-### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
-cld_tau_lsc = 3600.
-### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
-cld_tau_con = 3600.
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
-ffallv_lsc = 1.
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
-ffallv_con = 1.
-### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
-coef_eva = 2.e-5
-### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
-reevap_ice = y
-### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
-# - iflag_cldcon<=-1 diag. rain_Tiedtke 
-# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
-# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
-# - iflag_cldcon=3,   ratqs=ratqss
-iflag_cldcon = 3
-### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
-# - iflag_pdf=0, version ratqs, 
-# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
-# -              des PDFS de Sandrine Bony 
-iflag_pdf = 1
-### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
-fact_cldcon = 1.
-### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
-facttemps = 0.
-## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
-ok_newmicro = y
-### iflag_ratqs=0 correspond a la version IPCC AR4 
-iflag_ratqs=0
-### ratqsbas     ratqs en bas si iflag_cldcon=1 
-ratqsbas = 0.005
-### ratqshaut    ratqs en haut pour ratqss "stables"  
-ratqshaut = 0.33
-### rad_froid    rayon cristaux des nuages de glace "froids" 
-rad_froid = 35
-### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
-rad_chau1=12
-### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
-rad_chau2=11
-# 
-# Coefficient et parametres sur les drags
-#
-f_cdrag_ter=1.
-f_cdrag_stable=1.
-f_cdrag_oce=0.8
-f_rugoro=0.
-### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
-ksta_ter=1.e-7
-### cdmmax =     cdrag maximum pour le moment
-cdmmax = 2.5E-3
-### cdhmax =     cdrag maximum pour l energie
-cdhmax = 2.0E-3
-
-### nsplit_phys (D=1) 
-nsplit_phys=1
-
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_AP
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_AP	(revision 2769)
+++ 	(revision )
@@ -1,97 +1,0 @@
-## $Id$
-#
-##  Choix ou non  de  New oliq               
-new_oliq=y
-##  Activation ou non de la parametrisation de Hines pour la strato
-ok_hines=y
-##  Orodr  ou  non   pour l orographie              
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-##   Si = .T. ,  lecture du fichier limit avec la bonne annee             
-ok_limitvrai=n
-##  Flag  pour la convection : 1 pour LMD, 2 pour Tiedtke, 3 KE(nvlle version JYG), 30 KE(version IPCC AR4), 4 KE vect
-iflag_con=30
-## Facteur multiplication des precip convectives dans KE
-cvl_corr=1.0
-#
-#
-
-### niveau du diagnostique de conservation d energie
-if_ebil=0
-#
-# parametres KE
-#
-### epmax = Efficacite precipitation maximale
-epmax = .999
-### ok_adj_ema = ?? pas utilise
-ok_adj_ema = n
-### iflag_clw Flag calcul eau liquide
-# - iflag_clw=0 : qcond_incld(i,l) = em_qcondc(l)
-# - iflag_clw=1 : qcond_incld(i,l) = em_qcond(l)
-# - iflag_clw=2 : eau liquide diagnostique en fonction de la Precip
-iflag_clw = 1
-# 
-# parametres nuages
-#
-### cld_lc_lsc  contenu en eau liquide des nuages large-scale (fisrtilp) 
-cld_lc_lsc = 4.16e-4
-### cld_lc_con  contenu en eau liquide des nuages convectifs (fisrtilp) 
-cld_lc_con = 4.16e-4
-### cld_tau_lsc cte de temps utilisee pour eliminer l eau large-scale (fisrtilp) 
-cld_tau_lsc = 1800.
-### cld_tau_con cte de temps utilisee pour eliminer l eau convective (fisrtilp) 
-cld_tau_con = 1800.
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace large-scale (fisrtilp) 
-ffallv_lsc = 0.5
-### ffallv_lsc  cte utilisee dans calcul vitesse de chute cristaux de glace convectifs (fisrtilp) 
-ffallv_con = 0.5
-### coef_eva coef evaporation precips eau/glace (fisrtilp/fisrtilp_tr?/conlmd?)
-coef_eva = 2.e-5
-### reevap_ice  reevaporation de toute la precip dans la couche du dessous pour la glace (fisrtilp) 
-reevap_ice = y
-### iflag_cldcon  flag pour calculer ratqsc=F(ratqsbas,fact_cldcon,q_seri) (physiq) 
-# - iflag_cldcon<=-1 diag. rain_Tiedtke 
-# - iflag_cldcon=1, ratqsc=ratqsbas+fact_cldcon*(q_seri(1)-q_seri(k))/q_seri(k)
-# - iflag_cldcon=1/2, ratqs=max(ratqs,ratqsc)
-# - iflag_cldcon=3,   ratqs=ratqss
-iflag_cldcon = 3
-### iflag_pdf :  flag calcul distribution sous-maille de l eau et des nuages 
-# - iflag_pdf=0, version ratqs, 
-# - iflag_pdf=1, calcul eau condensee, fraction nuageuse, eau nuageuse a partir
-# -              des PDFS de Sandrine Bony 
-iflag_pdf = 1
-### fact_cldcon  constante calcul ratqsc (voir iflag_cldcon) et proprietes nuages convectifs, clwcon0 (physiq.F) 
-fact_cldcon = 1.
-### facttemps=   facteur de relaxation de ratqs (iflag_cldcon=1/2) et rnebcon (iflag_cldcon=3)
-facttemps = 0.
-## ok_newmicro   =y appel newmicro , =n appel nuage (calcul epaisseur optique et emmissivite des nuages) 
-ok_newmicro = y
-### iflag_ratqs=0 correspond a la version IPCC AR4 
-iflag_ratqs=0
-### ratqsbas     ratqs en bas si iflag_cldcon=1 
-ratqsbas = 0.005
-### ratqshaut    ratqs en haut pour ratqss "stables"  
-ratqshaut = 0.33
-### rad_froid    rayon cristaux des nuages de glace "froids" 
-rad_froid = 35
-### rad_chau1    rayon goutelettes d eau chauds", en haut: k=4-klev 
-rad_chau1=12
-### rad_chau2    rayon goutelettes d eau chauds", en bas: k=1-3  
-rad_chau2=11
-# 
-# Coefficient et parametres sur les drags
-#
-f_cdrag_ter=1.
-f_cdrag_stable=1.
-f_cdrag_oce=0.8
-f_rugoro=0.
-### ksta_ter      coef.diffusion minimale sur terre/sic/lic 
-ksta_ter=1.e-7
-### cdmmax =     cdrag maximum pour le moment
-cdmmax = 2.5E-3
-### cdhmax =     cdrag maximum pour l energie
-cdhmax = 2.0E-3
-
-### nsplit_phys (D=1) 
-nsplit_phys=1
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_NPv3.1
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_NPv3.1	(revision 2769)
+++ 	(revision )
@@ -1,132 +1,0 @@
-##############################################################################
-# PARAMETRES ET CLES DE CONFIGURATION LMDZ 
-# Cette parie sera bientot extrait dans un fichier config.def
-##############################################################################
-# D: Valeur par default
-#
-##############################################################################
-# PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
-##############################################################################
-# D: Valeur par default
-#
-#Parametres Orographiques et cdrags
-#**********************************
-##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
-ok_limitvrai=n
-#Cdrags 
-f_cdrag_stable=1.
-f_cdrag_ter=1.
-f_cdrag_oce=0.7
-#cdmmax
-cdmmax=2.5E-3
-#cdhmax
-cdhmax=2.0E-3
-##  Orodr  ou  non   pour l orographie
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-#Rugoro
-f_rugoro=0.
-#
-# Rayonnement
-#*********************
-# activation du nouveau code de rayonnement RRTM
-# 0 : Ancien code et 1 : RRTM (D=0)
-iflag_rrtm=0
-#
-##  Activation ou non de la parametrisation de Hines pour la strato
-#******************************************************************
-ok_hines=y
-#
-# Parametres nuages
-#******************
-#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
-cld_lc_lsc=6.e-4
-cld_lc_con=6.e-4
-#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
-cld_tau_lsc=1800.
-cld_tau_con=1800.
-#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
-ffallv_lsc=1.35
-ffallv_con=1.35
-#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
-coef_eva=1e-4
-reevap_ice=y
-#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
-iflag_cldcon=6
-fact_cldcon=1.
-facttemps=0.
-#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
-iflag_pdf=1
-#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
-ok_newmicro=y
-iflag_ratqs=2
-ratqsbas=0.002
-ratqshaut=0.25
-#rayon effectif pour les nuages de glace (D:35)
-rad_froid=35
-#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
-rad_chau1=12
-rad_chau2=11
-##  Choix ou non  de  New oliq               
-new_oliq=y
-#
-rei_min=20.
-rei_max=61.29
-#
-t_glace_min=258.
-t_glace_max=273.13
-#
-# Flags Convection 
-#*****************
-#flag  pour la convection (D:2, 1:LMD, 2:Tiedtke, 3:KE nouvelle physique, 30:KE IPCC)
-iflag_con=3
-#niveau de sorties des diagnos sur la conservation energie
-if_ebil=0
-#efficacite de precepitation maxim (D:.993)
-epmax=0.997
-#ajustement convectif sec au debut de la convection (D: n 0)
-ok_adj_ema=n
-iflag_clw=0
-#fermeture convective (D:1, 0:AR4, 2:ALE and ALP)
-iflag_clos=2
-#loi de melange a l entrainement  (D:1, 0:AR4=PDF plate, 1=PDF)
-iflag_mix=1
-#poids des PDFs plate et en cloche (D: 1 0)
-qqa1=1.
-qqa2=0.
-# Facteur multiplication des precip convectives dans KE
-cvl_corr=1.0
-#
-Fmax=0.65
-#
-# Flags Couche limite
-#********************
-#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
-iflag_thermals=15
-#pas de temps du spliting pour les thermiques
-nsplit_thermals=1
-tau_thermals=0.
-iflag_thermals_ed=10
-iflag_thermals_optflux=0
-#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
-iflag_pbl=8
-#diffusion turbulente
-ksta_ter=1.e-7
-ksta=1.e-10
-#ok_kzmin : calcul Kzmin dans la CL de surface
-ok_kzmin=y
-#couplage ou non avec la convection
-iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
-seuil_inversion=-0.08
-#rendement sur la puissance fournie par les thermiques a la convection
-alp_bl_k=0.5
-#
-# Flags wakes
-#************
-#activation ou non des wakes (D:0, 0:AR4, 1:nouvelle physique) 
-iflag_wake=1
-alp_offset=0.
-
-nsplit_phys=2
-
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_NPv3.2
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L39_NPv3.2	(revision 2769)
+++ 	(revision )
@@ -1,134 +1,0 @@
-##############################################################################
-# PARAMETRES ET CLES DE CONFIGURATION LMDZ 
-# Cette parie sera bientot extrait dans un fichier config.def
-##############################################################################
-# D: Valeur par default
-#
-##############################################################################
-# PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
-##############################################################################
-# D: Valeur par default
-#
-#Parametres Orographiques et cdrags
-#**********************************
-##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
-ok_limitvrai=n
-#Cdrags 
-f_cdrag_stable=1.
-f_cdrag_ter=1.
-f_cdrag_oce=0.7
-#cdmmax
-cdmmax=2.5E-3
-#cdhmax
-cdhmax=2.0E-3
-##  Orodr  ou  non   pour l orographie
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-#Rugoro
-f_rugoro=0.
-#
-# Rayonnement
-#*********************
-# activation du nouveau code de rayonnement RRTM
-# 0 : Ancien code et 1 : RRTM (D=0)
-iflag_rrtm=0
-## NSW need to be 6 when iflag_rrtm=1
-NSW=2   
-#
-##  Activation ou non de la parametrisation de Hines pour la strato
-#******************************************************************
-ok_hines=y
-#
-# Parametres nuages
-#******************
-#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
-cld_lc_lsc=6.e-4
-cld_lc_con=6.e-4
-#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
-cld_tau_lsc=1800.
-cld_tau_con=1800.
-#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
-ffallv_lsc=1.35
-ffallv_con=1.35
-#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
-coef_eva=1e-4
-reevap_ice=y
-#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
-iflag_cldcon=6
-fact_cldcon=1.
-facttemps=0.
-#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
-iflag_pdf=1
-#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
-ok_newmicro=y
-iflag_ratqs=2
-ratqsbas=0.002
-ratqshaut=0.25
-#rayon effectif pour les nuages de glace (D:35)
-rad_froid=35
-#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
-rad_chau1=12
-rad_chau2=11
-##  Choix ou non  de  New oliq               
-new_oliq=y
-#
-rei_min=20.
-rei_max=61.29
-#
-t_glace_min=258.
-t_glace_max=273.13
-#
-# Flags Convection 
-#*****************
-#flag  pour la convection (D:2, 1:LMD, 2:Tiedtke, 3:KE nouvelle physique, 30:KE IPCC)
-iflag_con=3
-#niveau de sorties des diagnos sur la conservation energie
-if_ebil=0
-#efficacite de precepitation maxim (D:.993)
-epmax=0.997
-#ajustement convectif sec au debut de la convection (D: n 0)
-ok_adj_ema=n
-iflag_clw=0
-#fermeture convective (D:1, 0:AR4, 2:ALE and ALP)
-iflag_clos=2
-#loi de melange a l entrainement  (D:1, 0:AR4=PDF plate, 1=PDF)
-iflag_mix=1
-#poids des PDFs plate et en cloche (D: 1 0)
-qqa1=1.
-qqa2=0.
-# Facteur multiplication des precip convectives dans KE
-cvl_corr=1.0
-#
-Fmax=0.65
-#
-# Flags Couche limite
-#********************
-#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
-iflag_thermals=17
-#pas de temps du spliting pour les thermiques
-nsplit_thermals=1
-tau_thermals=0.
-iflag_thermals_ed=10
-iflag_thermals_optflux=0
-#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
-iflag_pbl=11
-#diffusion turbulente
-ksta_ter=1.e-7
-ksta=1.e-10
-#ok_kzmin : calcul Kzmin dans la CL de surface
-ok_kzmin=y
-#couplage ou non avec la convection
-iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
-seuil_inversion=-0.08
-#rendement sur la puissance fournie par les thermiques a la convection
-alp_bl_k=0.5
-#
-# Flags wakes
-#************
-#activation ou non des wakes (D:0, 0:AR4, 1:nouvelle physique) 
-iflag_wake=1
-alp_offset=0.
-
-nsplit_phys=1
-
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L79_NPv5.17g
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_L79_NPv5.17g	(revision 2769)
+++ 	(revision )
@@ -1,183 +1,0 @@
-##############################################################################
-# PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
-##############################################################################
-# D: Valeur par default
-#
-#Parametres Orographiques et cdrags
-#**********************************
-##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
-ok_limitvrai=n
-#Cdrags 
-f_cdrag_stable=1.
-f_cdrag_ter=1.
-f_cdrag_oce=0.7
-f_ri_cd_min=0.6
-#cdmmax
-cdmmax=2.5E-3
-#cdhmax
-cdhmax=2.0E-3
-##  Orodr  ou  non   pour l orographie
-ok_orodr=y
-##  Orolf  ou  non   pour l orographie              
-ok_orolf=y
-#Rugoro
-f_rugoro=0.
-#
-### Random gravity waves
-#Activitate the stochastic parameterization of convective GWs (should be equal to ok_strato)
-ok_gwd_rando=y
-# Scale the momentum fluxes due to convective GWs
-gwd_rando_ruwmax=2.5
-#Scale the saturated momentum flux of  convective GWs 
-gwd_rando_sat=0.2
-
-#
-# Rayonnement
-#*********************
-# activation du nouveau code de rayonnement RRTM
-# 0 : Ancien code et 1 : RRTM (D=0)
-iflag_rrtm=0
-#NSW=2
-#
-##  Activation ou non de la parametrisation de Hines pour la strato
-#******************************************************************
-ok_hines=y
-#
-# Parametres nuages
-#******************
-#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
-cld_lc_lsc=0.0003
-cld_lc_con=0.0003
-#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
-cld_tau_lsc=1800.
-cld_tau_con=1800.
-#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
-ffallv_lsc=0.66528
-ffallv_con=0.66528
-#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
-coef_eva=2e-5
-reevap_ice=y
-#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
-iflag_cldcon=6
-fact_cldcon=1.
-facttemps=0.
-#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
-iflag_pdf=1
-#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
-ok_newmicro=y
-iflag_ratqs=4
-ratqsbas=0.002
-ratqshaut=0.312
-#rayon effectif pour les nuages de glace (D:35)
-rad_froid=35
-#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
-rad_chau1=12
-rad_chau2=11
-##  Choix ou non  de  New oliq               
-new_oliq=y
-#Rayons min et max effectifs des particules des nuages
-rei_min=16.
-rei_max=61.29
-#
-# Flags Convection 
-#*****************
-#Convection scheme switch (D:2, 1:LMD, 2:Tiedtke, 3:KE New Physics, 30:KE AR4)
-iflag_con=3
-#output level of energy conservation diagnostics
-if_ebil=0
-#maximum efficiency of cld water->precipitation conversion (D: 0.993)
-epmax=0.998
-#dry convective adjustment at beginning of Emanuel convective scheme (D: n 0)
-ok_adj_ema=n
-iflag_clw=0
-#Convective closure (D:1, 0:AR4, 2:ALE and ALP)
-iflag_clos=2
-#Convective entrainment mixing law (D:1, 0:AR4=flat PDF, 1=PDF)
-iflag_mix=0
-#weights of the bell shaped and flat PDF (used only if iflag_mix=1) (D: 1 0)
-qqa1=1.
-qqa2=0.
-#Parameters of the bell shaped PDF; Fmax=center (D= 0.65), Gammas=width (D=0.05)
-cvl_corr=1.0
-#Multiplicative factor of Emanuel convective scheme precipitation (D: 1.)
-Fmax=0.65
-#
-# Flags Couche limite
-#********************
-#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
-iflag_thermals=18
-#pas de temps du spliting pour les thermiques
-nsplit_thermals=1
-tau_thermals=0.
-iflag_thermals_ed=8
-fact_thermals_ed_dz=0.1
-iflag_thermals_optflux=0
-#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
-iflag_pbl=11
-#diffusion turbulente
-ksta_ter=1.e-7
-ksta=1.e-10
-#ok_kzmin : calcul Kzmin dans la CL de surface
-ok_kzmin=y
-#couplage ou non avec la convection
-iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
-seuil_inversion=-0.08
-#rendement sur la puissance fournie par les thermiques a la convection
-alp_bl_k=0.5
-#
-## temperature dependency of qsat for iterative procedure
-## temporary flag to switch between the old (CMIP5, D=0) and new versions (=1) versions 
-iflag_fisrtilp_qsat=4 
-## Reactivation du calcul d'un zmax continu pour les thermiques
-## reactivation d'une fermeture humide des thermiques  iflag_thermals_closure=2 (D=1)
-iflag_thermals_closure=1
-#
-# Flags wakes
-#************
-#Wake scheme switch (D:0, 0:AR4, 1:New Physics)
-iflag_wake=1
-#Constant value to be added to Alp (D: 0.)
-alp_offset=0.
-
-### nrlmd le 10/04/2012: Declenchement ###
-#Déclelenchement par couche-limite (0: deterministe, 1: stochastique)
-iflag_trig_bl=1
-#Surface critique au LCL
-s_trig=1.2e7
-#Temps de decorrelation entre scenes de cumulus
-tau_trig_shallow=1200
-#Temps de decorrelation entre scenes de cumulonimbus
-tau_trig_deep=1200
-# Pour la stabilisation
-random_notrig_max=0.99
-ok_adjwk=y
-tmax_fonte_cv=288.15
-
-
-### nrlmd le 10/04/2012: Fermeture ###
-#Fermeture par couche-limite (0: deterministe, 1: statistique, 2: statistique+convergence grande échelle)
-iflag_clos_bl=1
-### fin nrlmd le 10/04/2012
-
-## Modification de la plage de temperature pour la phase mixte liquide/glace des nuages
-## Controle par les t_glace_min/max, exposant_glace, iflag_t_glace (D=0)
-t_glace_min=240.
-t_glace_max=273.13
-exposant_glace=1.7
-iflag_t_glace=1
-iflag_ice_thermo=1
-
-#
-## The source terms of the TKE prognostic equation are diagnosed from tendencies (du, dv, dT) 
-## associated with subrgrid scaleamotions and treated as an additional heat source.
-## Controled by a key, iflag_ener_conserv (D=-1):
-## 0 : no conservation, -1 : old adhoc correction for kinetic E only (used for CMIP5) 
-## 1 : conservation, 101 : conversion from kinetic to heat only, 110 conversion from potential to heat only
-iflag_ener_conserv=1
-
-#Activation of corrections for water conservation (D: n). 
-##The default is n for compatibility with earlier versions.
-##generally it should be y.
-ok_conserv_q=y 
-
-
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv3.2
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv3.2	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv3.2	(revision 2770)
@@ -0,0 +1,131 @@
+##############################################################################
+# PARAMETRES ET CLES DE CONFIGURATION LMDZ 
+# Cette parie sera bientot extrait dans un fichier config.def
+##############################################################################
+# D: Valeur par default
+#
+##############################################################################
+# PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
+##############################################################################
+# D: Valeur par default
+#
+#Parametres Orographiques et cdrags
+#**********************************
+##   Si=.T. ,  lecture du fichier limit avec la bonne annee 
+ok_limitvrai=n
+#Cdrags 
+f_cdrag_stable=1.
+f_cdrag_ter=1.
+f_cdrag_oce=0.7
+#cdmmax
+cdmmax=2.5E-3
+#cdhmax
+cdhmax=2.0E-3
+##  Orodr  ou  non   pour l orographie
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+#Rugoro
+f_rugoro=0.
+#
+# Rayonnement
+#*********************
+# activation du nouveau code de rayonnement RRTM
+# 0 : Ancien code et 1 : RRTM (D=0)
+iflag_rrtm=0
+## NSW need to be 6 when iflag_rrtm=1
+NSW=2   
+#
+#
+# Parametres nuages
+#******************
+#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
+cld_lc_lsc=6.e-4
+cld_lc_con=6.e-4
+#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
+cld_tau_lsc=1800.
+cld_tau_con=1800.
+#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
+ffallv_lsc=1.35
+ffallv_con=1.35
+#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
+coef_eva=1e-4
+reevap_ice=y
+#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
+iflag_cldcon=6
+fact_cldcon=1.
+facttemps=0.
+#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
+iflag_pdf=1
+#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
+ok_newmicro=y
+iflag_ratqs=2
+ratqsbas=0.002
+ratqshaut=0.25
+#rayon effectif pour les nuages de glace (D:35)
+rad_froid=35
+#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
+rad_chau1=12
+rad_chau2=11
+##  Choix ou non  de  New oliq               
+new_oliq=y
+#
+rei_min=20.
+rei_max=61.29
+#
+t_glace_min=258.
+t_glace_max=273.13
+#
+# Flags Convection 
+#*****************
+#flag  pour la convection (D:2, 1:LMD, 2:Tiedtke, 3:KE nouvelle physique, 30:KE IPCC)
+iflag_con=3
+#niveau de sorties des diagnos sur la conservation energie
+if_ebil=0
+#efficacite de precepitation maxim (D:.993)
+epmax=0.997
+#ajustement convectif sec au debut de la convection (D: n 0)
+ok_adj_ema=n
+iflag_clw=0
+#fermeture convective (D:1, 0:AR4, 2:ALE and ALP)
+iflag_clos=2
+#loi de melange a l entrainement  (D:1, 0:AR4=PDF plate, 1=PDF)
+iflag_mix=1
+#poids des PDFs plate et en cloche (D: 1 0)
+qqa1=1.
+qqa2=0.
+# Facteur multiplication des precip convectives dans KE
+cvl_corr=1.0
+#
+Fmax=0.65
+#
+# Flags Couche limite
+#********************
+#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
+iflag_thermals=17
+#pas de temps du spliting pour les thermiques
+nsplit_thermals=1
+tau_thermals=0.
+iflag_thermals_ed=10
+iflag_thermals_optflux=0
+#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
+iflag_pbl=11
+#diffusion turbulente
+ksta_ter=1.e-7
+ksta=1.e-10
+#ok_kzmin : calcul Kzmin dans la CL de surface
+ok_kzmin=y
+#couplage ou non avec la convection
+iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
+seuil_inversion=-0.08
+#rendement sur la puissance fournie par les thermiques a la convection
+alp_bl_k=0.5
+#
+# Flags wakes
+#************
+#activation ou non des wakes (D:0, 0:AR4, 1:nouvelle physique) 
+iflag_wake=1
+alp_offset=0.
+
+nsplit_phys=1
+
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv5.4
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv5.4	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/physiq.def_NPv5.4	(revision 2770)
@@ -0,0 +1,186 @@
+#
+# $Id: physiq.def_NPv5.4 2446 2016-02-16 12:32:59Z fairhead $
+#
+#PARAMETRES ET CLES DE LA PHYSIQUE LMDZ
+###############################################################################
+## D: Valeur par default
+##
+##Parametres Orographiques et cdrags
+##**********************************
+###   Si=.T. ,  lecture du fichier limit avec la bonne annee 
+ok_limitvrai=n
+iflag_albedo=1
+#Cdrags 
+f_cdrag_stable=1.
+f_cdrag_ter=1.
+f_cdrag_oce=0.7
+f_ri_cd_min=0.6
+#cdmmax
+cdmmax=2.5E-3
+#cdhmax
+cdhmax=2.0E-3
+##  Orodr  ou  non   pour l orographie
+ok_orodr=y
+##  Orolf  ou  non   pour l orographie              
+ok_orolf=y
+#Rugoro
+f_rugoro=0.
+#
+### Random gravity waves
+#Activitate the stochastic parameterization of convective GWs (should be equal to ok_strato)
+ok_gwd_rando=y
+# Scale the momentum fluxes due to convective GWs
+gwd_rando_ruwmax=2.5
+#Scale the saturated momentum flux of  convective GWs 
+gwd_rando_sat=0.2
+sso_gkdrag=0.2
+sso_gfrcri=0.70
+sso_gkwake=0.40
+#
+# Rayonnement
+#*********************
+# activation du nouveau code de rayonnement RRTM
+# 0 : Ancien code et 1 : RRTM (D=0)
+iflag_rrtm=0
+#NSW=2
+#
+# Parametres nuages
+#******************
+#seuils de la precipitation des nuages strateformes (D: 2.6e-4 2.6e-4)
+cld_lc_lsc=0.0001
+cld_lc_con=0.0001
+#constante de temps pour eleminer eau lsc et convective (D: 3600. 3600.)
+cld_tau_lsc=900.
+cld_tau_con=900.
+#facteurs correctifs sur la vitesse de chute des cristaux de glace (D: 1 1)
+ffallv_lsc=1.
+ffallv_con=1.
+#coefficient sur la reevaporation de la pluie (D: 2.e-5 n)
+coef_eva=2e-5
+reevap_ice=y
+#calcul des proprietes des nuages convectifs (D:1 0.375 1.e-4) 
+iflag_cldcon=6
+fact_cldcon=1.
+facttemps=0.
+#calcul eau condensee et fraction nuageuse a partir des PDF (D:0, 0:version avec ratqs sinon nouvelles PDFs)  
+iflag_pdf=1
+#calcul epaisseur optique et emmissivite des nuages (D: y 1 0.01 0.3)
+ok_newmicro=y
+iflag_ratqs=4
+ratqsbas=0.002
+ratqshaut=0.312
+#rayon effectif pour les nuages de glace (D:35)
+rad_froid=35
+#rayons effectifs pour les nuages eau liq (tailles des gouttes d eau nuageuse, D: 13 9)
+rad_chau1=12
+rad_chau2=11
+##  Choix ou non  de  New oliq               
+new_oliq=y
+#Rayons min et max effectifs des particules des nuages
+rei_min=16.
+rei_max=61.29
+#
+# Flags Convection 
+#*****************
+#Convection scheme switch (D:2, 1:LMD, 2:Tiedtke, 3:KE New Physics, 30:KE AR4)
+iflag_con=3
+#output level of energy conservation diagnostics
+if_ebil=0
+#maximum efficiency of cld water->precipitation conversion (D: 0.993)
+epmax=0.9995
+#dry convective adjustment at beginning of Emanuel convective scheme (D: n 0)
+ok_adj_ema=n
+iflag_clw=0
+#Convective closure (D:1, 0:AR4, 2:ALE and ALP)
+iflag_clos=2
+#Convective entrainment mixing law (D:1, 0:AR4=flat PDF, 1=PDF)
+iflag_mix=1
+#weights of the bell shaped and flat PDF (used only if iflag_mix=1) (D: 1 0)
+qqa1=1.
+qqa2=0.
+#Parameters of the bell shaped PDF; Fmax=center (D= 0.65), Gammas=width (D=0.05)
+cvl_corr=1.0
+#Multiplicative factor of Emanuel convective scheme precipitation (D: 1.)
+Fmax=0.65
+#
+# Flags Couche limite
+#********************
+#shema de CL des thermiques (D:0, 0:ajustement sec,=>1:versions thermiques) 
+iflag_thermals=18
+#pas de temps du spliting pour les thermiques
+nsplit_thermals=1
+tau_thermals=0.
+iflag_thermals_ed=8
+fact_thermals_ed_dz=0.1
+iflag_thermals_optflux=0
+#shema de la couche de surface (D:1, 1:LMD, 8:Mellor-Yamada) 
+iflag_pbl=11
+#diffusion turbulente
+ksta_ter=1.e-7
+ksta=1.e-10
+#ok_kzmin : calcul Kzmin dans la CL de surface
+ok_kzmin=y
+#couplage ou non avec la convection
+iflag_coupl=5 (0:AR4 et 1:nouvelle physique)
+seuil_inversion=-0.08
+#rendement sur la puissance fournie par les thermiques a la convection
+alp_bl_k=0.5
+#
+## temperature dependency of qsat for iterative procedure
+## temporary flag to switch between the old (CMIP5, D=0) and new versions (=1) versions 
+iflag_fisrtilp_qsat=4 
+## Reactivation du calcul d'un zmax continu pour les thermiques
+## reactivation d'une fermeture humide des thermiques  iflag_thermals_closure=2 (D=1)
+iflag_thermals_closure=1
+#
+# Flags wakes
+#************
+#Wake scheme switch (D:0, 0:AR4, 1:New Physics)
+iflag_wake=1
+#Constant value to be added to Alp (D: 0.)
+alp_offset=0.
+
+### nrlmd le 10/04/2012: Declenchement ###
+#DÃ©clelenchement par couche-limite (0: deterministe, 1: stochastique)
+iflag_trig_bl=1
+#Surface critique au LCL
+s_trig=1.2e7
+#Temps de decorrelation entre scenes de cumulus
+tau_trig_shallow=1200
+#Temps de decorrelation entre scenes de cumulonimbus
+tau_trig_deep=1200
+# Pour la stabilisation
+random_notrig_max=0.99
+ok_adjwk=y
+tmax_fonte_cv=288.15
+
+
+### nrlmd le 10/04/2012: Fermeture ###
+#Fermeture par couche-limite (0: deterministe, 1: statistique, 2: statistique+convergence grande Ã©chelle)
+iflag_clos_bl=1
+### fin nrlmd le 10/04/2012
+
+## Modification de la plage de temperature pour la phase mixte liquide/glace des nuages
+## Controle par les t_glace_min/max, exposant_glace, iflag_t_glace (D=0)
+t_glace_min=233.13
+t_glace_max=273.13
+exposant_glace=1.
+iflag_t_glace=1
+iflag_ice_thermo=1
+
+#
+## The source terms of the TKE prognostic equation are diagnosed from tendencies (du, dv, dT) 
+## associated with subrgrid scaleamotions and treated as an additional heat source.
+## Controled by a key, iflag_ener_conserv (D=-1):
+## 0 : no conservation, -1 : old adhoc correction for kinetic E only (used for CMIP5) 
+## 1 : conservation, 101 : conversion from kinetic to heat only, 110 conversion from potential to heat only
+iflag_ener_conserv=1
+
+#Activation of corrections for water conservation (D: n). 
+##The default is n for compatibility with earlier versions.
+##generally it should be y.
+ok_conserv_q=y 
+
+### distribution sous-maille sur la verticale 
+iflag_cloudth_vert=1
+
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/run.def
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/run.def	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/run.def	(revision 2770)
@@ -3,4 +3,5 @@
 INCLUDEDEF=physiq.def
 INCLUDEDEF=gcm.def
+INCLUDEDEF=vert.def
 INCLUDEDEF=orchidee.def
 INCLUDEDEF=config.def
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L39
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L39	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L39	(revision 2770)
@@ -0,0 +1,9 @@
+## Avec ou sans strato
+ok_strato=y 
+## Activation ou non de la parametrisation de Hines pour la strato
+ok_hines=y
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=2
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=5.e-5
+
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L79
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L79	(revision 2770)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/GENERAL/PARAM/vert.def_L79	(revision 2770)
@@ -0,0 +1,41 @@
+#
+# $Id: vert_L79.def 2446 2016-02-16 12:32:59Z fairhead $
+#
+#### Verticale discretisation
+## Modified verticale discretisation for stratospheric versions.
+## The new version can be controled by following parameters
+## Al the parameters are given in km assuming a given scalehigh
+vert_sampling=strato_custom
+## scale hight
+vert_scale=7.
+## width of first layer
+vert_dzmin=0.017
+## dz in the low atmosphere
+vert_dzlow=1.
+## height at which resolution recches dzlow
+vert_z0low=8.7
+## dz in the mid atmsophere
+vert_dzmid=2.
+## height at which resolution recches dzmid
+vert_z0mid=70.
+## width of the transition
+vert_h_mid=20.
+## dz in the high atmsophere
+vert_dzhig=11.
+## height at which resolution recches dz
+vert_z0hig=75.
+## width of the transition
+vert_h_hig=20.
+## vert_prof_dissip used to choose the vertical profile
+## of horizontal dissipation (values are 0 and 1)
+vert_prof_dissip = 1
+dissip_zref = 50
+##  Avec ou sans strato
+ok_strato=y
+##  Activation ou non de la parametrisation de Hines pour la strato
+ok_hines=n
+#  Couche eponge dans les couches de pression plus faible que 100 fois la pression de la derniere couche
+iflag_top_bound=2
+#  Coefficient pour la couche eponge (valeur derniere couche)
+tau_top_bound=5.e-4
+#
Index: CONFIG/UNIFORM/v6/LMDZORINCA_v6/README
===================================================================
--- CONFIG/UNIFORM/v6/LMDZORINCA_v6/README	(revision 2769)
+++ CONFIG/UNIFORM/v6/LMDZORINCA_v6/README	(revision 2770)
@@ -1,5 +1,5 @@
 How to create a job and run directory :
 
-Choose in EXPERIMENTS the experiment to be done and copy the corresponding config.card to modipsl/config/LMDZORINCA_v5/, beside this README file. Modify the config.card as usual, for at least the JobName. Apply ../../util/ins_job and the creation of a new run directory will be done :
+Choose in EXPERIMENTS the experiment to be done and copy the corresponding config.card to modipsl/config/LMDZORINCA_v6/, beside this README file. Modify the config.card as usual, for at least the JobName. Apply ../../libIGCM/ins_job and the creation of a new run directory will be done :
   - the run directory will be created with the same name as JobName in config.card. If a directory with the same name already exists, nothing will be done.
   - the PARAM, DRIVER and POST directories from GENERAL/ will be copied into the new run directory.
@@ -11,3 +11,3 @@
 
 
-For details see http://forge.ipsl.jussieu.fr/igcmg/wiki/Modipsl_exec
+Documentation on how to use the configurations are found here : http://forge.ipsl.jussieu.fr/igcmg_doc/wiki/Doc
