Ignore:
Timestamp:
06/07/16 15:21:24 (8 years ago)
Author:
aclsce
Message:

Set up of IPSLCM6.0.4 (see details ​http://forge.ipsl.jussieu.fr/igcmg/ticket/94)

  • XIOS2 integration :
    • ORCHIDEE compilation (- xios2).
    • NEMO : use of xml separated files (opa, lim3, pisces)
  • Modified cleaning for IOIPSL in AA_make
  • COSP : compilation with cosp by default, use of LMDZ_COSP_OK lmdz.card parameter.
  • POST/monitoring* : some cleaning
  • ORCHIDEE new parameters (see ticket)
  • Updated both pdControl and piControl experiments
Location:
CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM
Files:
10 edited

Legend:

Unmodified
Added
Removed

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/lim3.card

    r2854 r2876  
    1717List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ice_lim3_ref , namelist_ice_ref ), \ 
    1818        (${SUBMIT_DIR}/PARAM/namelist_lim3_${RESOL_OCE}_cfg             , namelist_ice_cfg ) 
     19        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml                  , file_def_nemo-lim.xml   ), \ 
     20        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-lim.xml                  , field_def_nemo-lim.xml   ) 
     21 
    1922 
    2023[RestartFiles] 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/lmdz.card

    r2854 r2876  
    7474        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
    7575        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    76         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    77         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     76        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_input_nl.txt,   .),          \ 
     77        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_output_nl.txt,  .),          \ 
    7878        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),          \ 
    7979        (${SUBMIT_DIR}/PARAM/guide.def, .),                                 \ 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/opa9.card

    r2854 r2876  
    2525            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/weights_Goutorbe1_2_eorca1_bilinear.nc               ,  . ), \ 
    2626            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/merged_ESACCI_BIOMER4V1R1_CHL_REG05.nc               ,  . ), \ 
    27             (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/weights_reg05_2_eorca1_bilinear.nc                   ,  . ) 
     27            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/weights_reg05_2_eorca1_bilinear.nc                   ,  . ), \ 
     28            (${R_IN}/OCE/IPSLCM6/${opa9_UserChoices_ORCA_version}/vosaline_360x180-ORCA1_WOA13_climatemonth.nc         , sali_ref_clim_monthly.nc ) 
    2829 
    2930 
    … …  
    3233 
    3334[ParametersFiles] 
    34 List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref  , namelist_ref        ), \ 
    35         (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/field_def.xml , field_def_nemo.xml  ), \ 
    36         (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/domain_def.xml, domain_def_nemo.xml ), \ 
     35List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref  , namelist_ref        ), \ 
     36        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-opa.xml , field_def_nemo-opa.xml  ), \ 
     37        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/domain_def_nemo.xml, domain_def_nemo.xml ), \ 
    3738        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}_cfg          , namelist_cfg        ), \ 
    38         (${SUBMIT_DIR}/PARAM/context_nemo.xml                   , context_nemo.xml    ), \ 
    39         (${SUBMIT_DIR}/PARAM/file_def_nemo.xml                  , file_def_nemo.xml   ) 
     39        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/context_nemo.xml                   , context_nemo.xml    ), \ 
     40        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml                  , file_def_nemo-opa.xml   ) 
     41 
    4042    
    4143 
    … …  
    8587[Post_1M_grid_T] 
    8688Patches = () 
    87 GatherWithInternal = (nav_lon, nav_lat, deptht, time_instant, time_counter, time_centered, time_centered_bounds) 
     89GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds) 
    8890TimeSeriesVars2D = (zos, zossq, tos, sos, tossq, omlmax, mldkz5, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo) 
    8991ChunckJob2D = NONE 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/orchidee.card

    r2854 r2876  
    1515List=   (${R_IN}/SRF/soils_param.nc,        . ), \ 
    1616        (${R_IN}/SRF/routing.nc,            . ), \ 
    17         (${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \ 
     17    (${R_IN}/SRF/albedo/alb_bg_modisopt.nc, alb_bg.nc), \ 
    1818        (${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_2000.nc, PFTmap.nc), \ 
    1919        (${R_IN}/SRF/cartepente2d_15min.nc, .) 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/pdControl/COMP/pisces.card

    r2854 r2876  
    3535        (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref, namelist_pisces_ref) ,\ 
    3636        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg        , namelist_pisces_cfg) 
     37        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml                  , file_def_nemo-pisces.xml   ), \ 
     38        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-pisces.xml                  , field_def_nemo-pisces.xml   ) 
     39         
    3740 
    3841[RestartFiles] 
    … …  
    4548List=   (${config_UserChoices_JobName}_1y_ptrc_T.nc        , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_ptrc_T.nc    , Post_1Y_ptrc_T   ) , \ 
    4649        (${config_UserChoices_JobName}_1y_diad_T.nc        , ${R_OUT_MBG_O_Y}/${PREFIX}_1Y_diad_T.nc    , Post_1Y_diad_T   ) , \ 
    47         (${config_UserChoices_JobName}_1m_bioscalar.nc_T.nc, ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1D_bioscalar) , \ 
     50        (${config_UserChoices_JobName}_1m_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1M_bioscalar.nc , Post_1M_bioscalar) , \ 
    4851        (${config_UserChoices_JobName}_1m_ptrc_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_ptrc_T.nc    , Post_1M_ptrc_T   ) , \ 
    4952        (${config_UserChoices_JobName}_1m_diad_T.nc        , ${R_OUT_MBG_O_M}/${PREFIX}_1M_diad_T.nc    , Post_1M_diad_T   ) , \ 
    50         (${config_UserChoices_JobName}_1d_bioscalar.nc_T.nc, ${R_OUT_MBG_O_M}/${PREFIX}_1D_bioscalar.nc , Post_1D_bioscalar) 
     53        (${config_UserChoices_JobName}_1d_bioscalar.nc     , ${R_OUT_MBG_O_M}/${PREFIX}_1D_bioscalar.nc , Post_1D_bioscalar) 
    5154 
    5255 
    … …  
    5457[Post_1D_bioscalar] 
    5558Patches = () 
    56 GatherWithInternal = (time_counter, time_instant, time_centered_bounds) 
     59GatherWithInternal = (time_counter, time_instant, time_instant_bounds) 
     60TimeSeriesVars2D = (pno3tot, ppo4tot, psiltot, palktot, pfertot, tcflx, tcflxcum, tcexp, tintpp, tnfix, tdenit) 
     61ChunckJob2D = OFF 
     62TimeSeriesVars3D = () 
     63ChunckJob3D = 50Y 
     64Seasonal=OFF 
     65 
     66[Post_1M_bioscalar] 
     67Patches = () 
     68GatherWithInternal = (time_counter, time_instant, time_instant_bounds) 
    5769TimeSeriesVars2D = (pno3tot, ppo4tot, psiltot, palktot, pfertot, tcflx, tcflxcum, tcexp, tintpp, tnfix, tdenit) 
    5870ChunckJob2D = OFF 
    … …  
    6375[Post_1M_ptrc_T] 
    6476Patches = () 
    65 GatherWithInternal = (nav_lon, nav_lat, time_counter, time_instant, time_counter_bounds) 
     77GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    6678TimeSeriesVars2D = () 
    6779ChunckJob2D = 50Y 
    … …  
    8193[Post_1Y_ptrc_T] 
    8294Patches = () 
    83 GatherWithInternal = (nav_lon, nav_lat, time_counter, time_instant, time_counter_bounds) 
     95GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    8496TimeSeriesVars2D = () 
    8597ChunckJob2D = OFF 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/lim3.card

    r2826 r2876  
    1717List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ice_lim3_ref , namelist_ice_ref ), \ 
    1818        (${SUBMIT_DIR}/PARAM/namelist_lim3_${RESOL_OCE}_cfg             , namelist_ice_cfg ) 
     19        (${SUBMIT_DIR}/PARAM/file_def_nemo-lim3.xml                  , file_def_nemo-lim.xml   ), \ 
     20        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-lim.xml                  , field_def_nemo-lim.xml   ) 
     21 
    1922 
    2023[RestartFiles] 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/lmdz.card

    r2847 r2876  
    7272        (${SUBMIT_DIR}/PARAM/gcm.def_${RESOL_ATM_XY},    gcm.def),          \ 
    7373        (${SUBMIT_DIR}/PARAM/vert.def_L${RESOL_ATM_Z},   vert.def),         \ 
    74         (${SUBMIT_DIR}/PARAM/cosp_input_nl.txt,                .),          \ 
    75         (${SUBMIT_DIR}/PARAM/cosp_output_nl.txt,               .),          \ 
     74        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_input_nl.txt,   .),          \ 
     75        (${MODIPSL}/modeles/LMDZ/DefLists/cosp_output_nl.txt,  .),          \ 
    7676        (${SUBMIT_DIR}/PARAM/config.def_${ConfType},  config.def),          \ 
    7777        (${SUBMIT_DIR}/PARAM/guide.def, .),                                 \ 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/opa9.card

    r2861 r2876  
    3333 
    3434[ParametersFiles] 
    35 List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref  , namelist_ref        ), \ 
    36         (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/field_def.xml , field_def_nemo.xml  ), \ 
    37         (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/domain_def.xml, domain_def_nemo.xml ), \ 
     35List=   (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_ref  , namelist_ref        ), \ 
     36        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-opa.xml , field_def_nemo-opa.xml  ), \ 
     37        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/domain_def_nemo.xml, domain_def_nemo.xml ), \ 
    3838        (${SUBMIT_DIR}/PARAM/namelist_${RESOL_OCE}_cfg          , namelist_cfg        ), \ 
    39         (${SUBMIT_DIR}/PARAM/context_nemo.xml                   , context_nemo.xml    ), \ 
    40         (${SUBMIT_DIR}/PARAM/file_def_nemo.xml                  , file_def_nemo.xml   ) 
     39        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/context_nemo.xml                   , context_nemo.xml    ), \ 
     40        (${SUBMIT_DIR}/PARAM/file_def_nemo-opa.xml                  , file_def_nemo-opa.xml   ) 
     41 
    4142    
    4243 
    … …  
    8687[Post_1M_grid_T] 
    8788Patches = () 
    88 GatherWithInternal = (nav_lon, nav_lat, deptht, time_instant, time_counter, time_centered, time_centered_bounds) 
     89GatherWithInternal = (nav_lon, nav_lat, deptht, time_counter, time_centered, time_centered_bounds) 
    8990TimeSeriesVars2D = (zos, zossq, tos, sos, tossq, omlmax, mldkz5, mldr10_1, nshfls, rsntds, rsds, friver, hc300, wfo) 
    9091ChunckJob2D = NONE 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/orchidee.card

    r2807 r2876  
    1515List=   (${R_IN}/SRF/soils_param.nc,        . ), \ 
    1616        (${R_IN}/SRF/routing.nc,            . ), \ 
    17         (${R_IN}/SRF/albedo/alb_bg_jrctip.nc, . ), \ 
     17        (${R_IN}/SRF/albedo/alb_bg_modisopt.nc, alb_bg.nc), \ 
    1818        (${R_IN}/SRF/PFTmap_1850to2005_AR5_LUHa.rc2/PFTmap_IPCC_1850.nc, PFTmap.nc), \ 
    1919        (${R_IN}/SRF/cartepente2d_15min.nc, .) 

  • CONFIG/UNIFORM/v6/IPSLCM6/EXPERIMENTS/IPSLCM/piControl/COMP/pisces.card

    r2860 r2876  
    3535        (${MODIPSL}/modeles/NEMOGCM/CONFIG/SHARED/namelist_pisces_ref, namelist_pisces_ref) ,\ 
    3636        (${SUBMIT_DIR}/PARAM/namelist_pisces_${RESOL_OCE}_cfg        , namelist_pisces_cfg) 
     37        (${SUBMIT_DIR}/PARAM/file_def_nemo-pisces.xml                  , file_def_nemo-pisces.xml   ), \ 
     38        (${MODIPSL}/modeles/NEMOGCM/CONFIG/ORCA1_LIM3_PISCES/EXP00/field_def_nemo-pisces.xml                  , field_def_nemo-pisces.xml   ) 
     39         
    3740 
    3841[RestartFiles] 
    … …  
    5457[Post_1D_bioscalar] 
    5558Patches = () 
    56 GatherWithInternal = (time_counter, time_instant, time_centered_bounds) 
     59GatherWithInternal = (time_counter, time_instant, time_instant_bounds) 
    5760TimeSeriesVars2D = (pno3tot, ppo4tot, psiltot, palktot, pfertot, tcflx, tcflxcum, tcexp, tintpp, tnfix, tdenit) 
    5861ChunckJob2D = OFF 
    … …  
    6366[Post_1M_bioscalar] 
    6467Patches = () 
    65 GatherWithInternal = (time_counter, time_instant, time_centered_bounds) 
     68GatherWithInternal = (time_counter, time_instant, time_instant_bounds) 
    6669TimeSeriesVars2D = (pno3tot, ppo4tot, psiltot, palktot, pfertot, tcflx, tcflxcum, tcexp, tintpp, tnfix, tdenit) 
    6770ChunckJob2D = OFF 
    … …  
    7275[Post_1M_ptrc_T] 
    7376Patches = () 
    74 GatherWithInternal = (nav_lon, nav_lat, time_counter, time_instant, time_counter_bounds) 
     77GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    7578TimeSeriesVars2D = () 
    7679ChunckJob2D = 50Y 
    … …  
    9093[Post_1Y_ptrc_T] 
    9194Patches = () 
    92 GatherWithInternal = (nav_lon, nav_lat, time_counter, time_instant, time_counter_bounds) 
     95GatherWithInternal = (nav_lon, nav_lat, time_counter, time_centered, time_centered_bounds) 
    9396TimeSeriesVars2D = () 
    9497ChunckJob2D = OFF 
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